New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3877664NA (NA)4 (0.060) 4/270 9.5 NA noncoding (80/98 nt) RIP280 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site RIP280 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site
?NC_000913 = 3877675 NA (NA)noncoding (91/98 nt) RIP280 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site RIP280 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 170 total aligned reads displayed.

TAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCACGGCGCGGTTCAACGGCGTCGCCCATCAGCGTGGTGAACAACTGGTCGGCA  >  NC_000913/3877522‑3877803
                                                                                                                                              |                                                                                                                                           
taacggCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTGTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTCTCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGAt                                                                                                                                             <  1:704703/138‑1 (MQ=255)
 attggCGGATTGCAGAAATAAAAAGGGCGGGGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATa                                                                                                                                            <  1:1058788/139‑1 (MQ=255)
  aTTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATac                                                                                                                                           >  2:289718/1‑142 (MQ=255)
  aTTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATaa                                                                                                                                           <  2:89517/143‑1 (MQ=255)
  aTTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATaa                                                                                                                                           <  2:784333/143‑1 (MQ=255)
   ttGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCGCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATGCAATACATTGCAAGATTTTCGTAGGCCTGATAAg                                                                                                                                          <  1:291964/143‑1 (MQ=255)
       ggATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTa                                                                                                                                      <  1:973622/143‑1 (MQ=255)
       ggATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAAAGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGCTTTTCGTAGGCCAGATAAGCGTa                                                                                                                                      >  1:197730/1‑143 (MQ=255)
       ggATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTCCCTATAGCAATGTACCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTa                                                                                                                                      <  2:1191838/143‑1 (MQ=25)
             cAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCAt                                                                                                                                <  2:709620/143‑1 (MQ=255)
               taactAAACAGGGCGGAGATGCTCTCCGCCCTTTTCTTATAGCTTCTTTCCGTATGCGGCGTGAACGCCTTATCCGGCTTAGAAAATCATTAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCa                                                                                                                              <  1:538992/139‑1 (MQ=21)
               gAAATAAGAAGGACGGGTGTGATCTCCGGCCGTTTCTTAGAGCTTCGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCa                                                                                                                              <  1:832573/143‑1 (MQ=18)
               gAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGAGTTTCGTAAGCCTGATAAGCCTAACGCATCa                                                                                                                              >  1:1039625/1‑143 (MQ=255)
               aaaaTAAAAATTGCGGAGATGATCTTCTCTTTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCTGCTTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCa                                                                                                                              <  1:209335/142‑1 (MQ=21)
                  aTAAAAAGGGCGGAGATGATCTCCGCCCTTTTCGTATAGGTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCGATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGc                                                                                                                           >  2:590623/1‑143 (MQ=255)
                     aaaaGGGCGGAGATCATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTCCAAGCTTTTCGAAGGCCTGATAAGCGTAGCGCATCGAGCACg                                                                                                                        >  1:234740/1‑143 (MQ=25)
                      aaaGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCAGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCACGATTTTCGTAGGCCTGATAAGCGTCGCGCATCAGGCACGc                                                                                                                       >  1:685754/1‑143 (MQ=255)
                        aGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATCCATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTc                                                                                                                     <  2:824568/143‑1 (MQ=255)
                            gggtgctgatCTCTCCCCTTTTCTCATCGCGTCTTGCCGGGTGCGGCGTGGACGCCTTATCCGGCCGACAACATCATGAAAATTCCATACATTGCAAGATTTTCGTAGGCCTCATAAGCGTAGCGCATCAGGCACGCTCGCAt                                                                                                                 <  1:489844/137‑1 (MQ=18)
                            cGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCAt                                                                                                                 <  2:210773/143‑1 (MQ=255)
                               aggtggtctcCGCCCTTTTCTTATCGCTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGt                                                                                                              <  1:278824/137‑1 (MQ=255)
                                ggtgatTTCCGCCCTTATCTTATAGCTTCTTGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGtt                                                                                                             <  1:285217/141‑1 (MQ=255)
                                   gatCTCCGCGCTTTTCTTAGAGCTGCGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAGCACAGGGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAgc                                                                                                          <  1:1112394/143‑1 (MQ=21)
                                   gatCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAgc                                                                                                          >  1:542031/1‑143 (MQ=255)
                                    atCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACAAAATCCTGCAACTTCAATACATTGCAAGATTTTCGTAAGCCTGATAGACGTAGCGCATCAGGCCCGccacgctcgaccggg                                                                                                         >  1:972829/1‑129 (MQ=18)
                                     tctcCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACACAATCATGAAAATTCAATACATTGCAAGCTTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAgcgc                                                                                                        >  1:290484/1‑143 (MQ=255)
                                      ctcCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGcc                                                                                                       <  2:920154/143‑1 (MQ=255)
                                      ctcCGCCCTTTTCTTATAGCTTCTTGCCGGATGAGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGACACGCACGCACGCTTAGCGcc                                                                                                       >  1:796572/1‑143 (MQ=21)
                                        ccGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGCACGCCTTATCCGGCCTACAAAATCATGAAAATTCACTACATTGCAAGATTTTCGTAGGCCGGATAAGCGTAGCCCATCGAGCACGCCCGCATCGTTAgcgcgct                                                                                                     >  1:498989/1‑140 (MQ=21)
                                            ccTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCACTACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTaaa                                                                                                 >  1:413653/1‑143 (MQ=255)
                                               tttctcctcgCTTCCTTCCGGATGGCGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATGGCAAGATTTCCCTAGGCCGGATAAGCGTAGCGCATCATGCACTCTCGCATGGTTAGCGCCATTAAatat                                                                                              <  2:726192/134‑1 (MQ=18)
                                               tttCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAatat                                                                                              <  2:1172279/143‑1 (MQ=255)
                                                 tCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCACATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCg                                                                                            <  2:280333/143‑1 (MQ=255)
                                                      taGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATAtt                                                                                       >  2:1129728/1‑143 (MQ=255)
                                                       aGCTTTTTGCCGAATGCGGCGTGAACGCCTTTTCCGGCCTACAAAAGCATGAAAAGTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTc                                                                                      <  1:1094830/143‑1 (MQ=21)
                                                         cttcttGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTcgc                                                                                    >  2:253060/1‑143 (MQ=255)
                                                         cttcttGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTcgc                                                                                    <  1:941238/143‑1 (MQ=255)
                                                           tcttGCCGGAGGCGCCGTGAACGCCGTATCCGACCTACCAAAGCATGCAACGTCAATACAATGCAAGATTGTCGTAGGCCTGATAAGCGTAGAGCATCAGGTACAGGGACAAGATGATGCCCATTAAATATCGATATTcgccg                                                                                  <  1:370288/143‑1 (MQ=9)
                                                           tctgggcGGATGCGGCGTGAACCCCTTATCCCGCCAACAGACTCCTTAAAATTCAGTACCTTGCAAGACTTGGGTAGGCCTGATAAGCGTAGCGTATCAGGCACGCTCGCATGGTTAGCGCCATTAAAGATCGATATTcgccg                                                                                  <  1:183274/137‑1 (MQ=21)
                                                               gCCGGGTGCGGCGGGAGCGCCTTATCCGGGCTACAAAAGCGTGAAAATTCAAGACATTGCAAGATTTTCGTAGGCCGGCTAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCttt                                                                              <  1:302649/143‑1 (MQ=25)
                                                                ccGGCTGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCCAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCCCGCTCGCATGGTTAGCGCCATTAGAGATCGATATTCGCCGCttcc                                                                             >  2:294530/1‑141 (MQ=21)
                                                                ccGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATCTTCGCCGCTTTc                                                                             >  2:644359/1‑143 (MQ=255)
                                                                ccGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAATCATGAAAATTCAATACATTGAAAGATTTTCGTAGGCCGGATAAGCGTAGCGCATCAGGCGCGCGAGGATGGTTAGAGCAAGTAAATGACGATATTGGCCAGTTTc                                                                             >  2:468971/1‑143 (MQ=12)
                                                                 gggATGCGGCGTGAACGCCTTACCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGCTTTTCGCACGTCTCACACGCGTATTTTGTCATGCACGCTCGCATGGTTAGTGCCATTAAATATCGATATTCGCCGCTTTCa                                                                            <  1:1171530/142‑1 (MQ=21)
                                                                 cGGATGCGGCGTGGACGCCGGATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCAGGGTTAGCGCCATTAAATATCGATATTCGCCGCTGTCa                                                                            <  2:619746/143‑1 (MQ=25)
                                                                   gATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCGTCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAgg                                                                          <  1:753716/143‑1 (MQ=255)
                                                                   gATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCACTAAATATCGATATTCGCCGCTTTCAgg                                                                          >  2:509022/1‑143 (MQ=255)
                                                                        ggcgTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGtt                                                                     <  2:569185/143‑1 (MQ=255)
                                                                           tccaaCGCCGCATCCGGCCTACAAAACCATGAAAATTCAAGACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTtctc                                                                  <  2:433872/140‑1 (MQ=37)
                                                                           gTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCCGGGCGTtctc                                                                  >  2:1035622/1‑143 (MQ=255)
                                                                           gTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTtctc                                                                  <  1:555260/143‑1 (MQ=255)
                                                                              aaCGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTc                                                               <  2:1036429/143‑1 (MQ=255)
                                                                               aCGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTGTATTcg                                                              >  2:35102/1‑142 (MQ=255)
                                                                               aCGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCa                                                              >  2:538721/1‑143 (MQ=255)
                                                                                cGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCaa                                                             <  1:76789/143‑1 (MQ=255)
                                                                                   cTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATaa                                                                                                                                           >  2:290704/1‑62 (MQ=255)
                                                                                    ttATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATaaa                                                         <  2:832542/143‑1 (MQ=255)
                                                                                    ttATCCGGCATACAAAATCATGAAAATTCAATACGTTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATaaa                                                         <  1:1062135/143‑1 (MQ=255)
                                                                                      ggccGGCCTACGAAATCACGAAGATTCGATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATAGTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACg                                                       <  1:215444/141‑1 (MQ=38)
                                                                                      aTCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACg                                                       >  1:666158/1‑143 (MQ=255)
                                                                                      aTCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGAAATTCGCCGCCTACAGAGCGTtcaaagcactcaaca                                                       >  1:388750/1‑130 (MQ=25)
                                                                                          ggCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCCCg                                                   >  1:921591/1‑143 (MQ=255)
                                                                                           gCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCCCTTTCACGGCGTTCTATGCACTAAACGCACgg                                                  >  2:6849/1‑143 (MQ=37)
                                                                                              tACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCACGgcgc                                               >  1:147279/1‑143 (MQ=255)
                                                                                               aCAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCACGGcgcg                                              <  1:998685/143‑1 (MQ=255)
                                                                                                 aaaaTCACGAAAATTCAATACAATGCAAGATTTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTGCAGGGCGTTCTCTTCAATAAACGCACGGCGCGGt                                            <  2:378663/143‑1 (MQ=255)
                                                                                                  gaaTCATGAAAATTCAATACATTGCAAGATTTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCACGGCGCGGtt                                           <  1:168212/142‑1 (MQ=255)
                                                                                                      catcataaTTTAATACATGGGAAGTTGTTCGTAGGCCGTATACGCTGGGGGCATCAGGATCGTTCTTATGTTTAGCGCCATGAAATATCGATAGTCGCCGGTTTCAGTGCGTTCTCTTCAATAAACGCACGGCGCGGTTCAAc                                       <  1:652052/137‑1 (MQ=255)
                                                                                                          aaaaTTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTCGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCACGGCGCGGTTCAACGGCg                                   >  2:1152860/1‑143 (MQ=255)
                                                                                                            aaTTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGCTGTTCGCCACACTCAGGGCGTTCTCTTCAATAAACGCACGGCGCGGTTCAACGGCGTc                                 >  2:874877/1‑143 (MQ=38)
                                                                                                              ttCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAACCGCACGGCGCGGTTCAACGGCGTGGc                               >  1:376505/1‑143 (MQ=255)
                                                                                                                 aaTACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGAGATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCACGGCGCGGTTCAACGGCGTCGCCCa                            <  2:795850/143‑1 (MQ=255)
                                                                                                                 aaTACATGGCAAGACTTTCGTAGGCCTGATACGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCACGGCGCGGTTCAACGGCGTCGCCCa                            <  1:521464/143‑1 (MQ=255)
                                                                                                                   tACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCACGGCGCGGTTCAACGGCGTCGCCCATc                          >  2:1106832/1‑143 (MQ=255)
                                                                                                                   tACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCACGGCGCGGTTCAACGGCGTCGCCCATc                          <  2:765448/143‑1 (MQ=255)
                                                                                                                   tACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCACGGCGCGGTTCAACGGCGTCGCCCATc                          <  2:394671/143‑1 (MQ=255)
                                                                                                                   tACATGGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCACGGCGCGGTTCAACGGCGTCGCCCATc                          <  2:116073/143‑1 (MQ=255)
                                                                                                                      atgggaaGATGTGCGTAGGCCTGCTAGGCGTAGCGCGTCAGGCACGTTCGCCGGGTTAGCGCCATTAAAGGTCGAGATTCGCGGCTTTCAGGGCGTTCTCTTCAATAAACGCACGGCGCGGTTCAACGGCGTCGCCCATCAGc                       <  1:107960/138‑1 (MQ=255)
                                                                                                                        tGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAACCGCACGGCGCGGTTCAACTGCGTCGCCCATCAGCgg                     >  2:320034/1‑142 (MQ=255)
                                                                                                                         gCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCGCTTCAATAAACGCACGGCGCGGTTCAACGGCGTCGCCCATCAGCgtg                    <  2:507766/143‑1 (MQ=255)
                                                                                                                         gCAAGATTTACGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCCCATGGTTAGCGCCATTAAATATCTATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCACGGCGCGGTTCAACGGCGTCGCCCATCAGCgtg                    <  2:385173/143‑1 (MQ=255)
                                                                                                                           aaGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCACGGCGCGGTTCAACGGCGTCGCCCATCAGCgtggt                  <  2:637001/143‑1 (MQ=255)
                                                                                                                            agatcgtCGTAGGCCCGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCACGGCGCGGTTCAACGGCGTCGCCCATCAGCgtggtg                 <  2:234740/137‑1 (MQ=255)
                                                                                                                            aGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCACGGCGCGGTTCAACGGCGTCGCCCATCAGCgtggtg                 <  2:413653/143‑1 (MQ=255)
                                                                                                                              actttGGTAGGCAGGATAAGCGAAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCACGGCGCGGTTCAACGGCGTCGCCCATCAGCGTGGTGaa               <  1:1011238/141‑1 (MQ=255)
                                                                                                                              aTTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCACGGCGCGGTTCAACGGCGTCGCCCATCAGCGTGGTGaa               <  1:295288/143‑1 (MQ=255)
                                                                                                                                 ttCGTAGGCCTGATGAGAGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCACGGCGCGGTTCAACGTCGTCGCCCATCAGCGTGGTGaacaa            <  1:568283/143‑1 (MQ=255)
                                                                                                                                 ttCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCACGGCGCGGTTCAACGGCGTCGCCCATCAGCGTGGTGaacaa            <  2:660636/143‑1 (MQ=255)
                                                                                                                                  tCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCACGGCGCGGTTCAACGGCGTCGCCCATCAGCGTGGTGaacaac           <  2:161009/143‑1 (MQ=255)
                                                                                                                                    gTAGGCCTGATAAGCGTATCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCACGGCGCGGTTCAACGGCGTCGCCCATCAGCGTGGTGAACAACTg         <  2:531048/143‑1 (MQ=255)
                                                                                                                                     tAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCACGGCGCGGTTCAACGGCGTCGCCCATCAGCGTGGTGAACAACTgg        >  2:791190/1‑143 (MQ=255)
                                                                                                                                      aGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCACGGCGCGGTTCAACGGCGTCGCCCATCAGCGTGGTGAACAACTGGt       <  2:38908/143‑1 (MQ=255)
                                                                                                                                       ggCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCACGGCGCGGTTCAACGGCGTCGCCCATCAGCGTGGTGAACAACTGGTc      <  2:828279/143‑1 (MQ=255)
                                                                                                                                       ggCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCACGGCGCGGTTCAACGGCGTCGCCCATCAGCGTGGTGAACAACTGGTc      <  1:592352/143‑1 (MQ=255)
                                                                                                                                       agCCTGATAAGCGTAGCGCGTCGGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCACGGCGCGGTTCAACGGCGTCGCCCATCAGCGTGGTGAACAACTGGTc      <  1:1010381/142‑1 (MQ=255)
                                                                                                                                        gCCTGGTAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCACGGCGCGGTTCAACGGCGTCGCCCATCAGCGTGGTGAACAACTGGTCg     <  1:882282/143‑1 (MQ=255)
                                                                                                                                        gCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCCATAAACGCACGGCGCGGTTCAACCGCGTCCCCCCTCAGCGTCGCGAACAACTGGTCg     >  2:427876/1‑143 (MQ=255)
                                                                                                                                        gCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCACGGCGCGGTTCAACGGCGTCGCCCATCAGCGTGGTGAACAACTGGTCg     >  2:854383/1‑143 (MQ=255)
                                                                                                                                         ccTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGAGATTCGCCGCTCGCAGGGCGTTCTCCTCAGTAAACGCACGGCGCGGTCCAACGACGTCGCCCATCAGCGTCGTGCACCACTGGTccg    >  1:531159/1‑141 (MQ=255)
                                                                                                                                           tGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTGGCTGCTTTCAGGGCGTTCTCTTCAATAAACGCACGGCGCGGTTCAACGGCGTCGCCCATCAGCGTGGTGAACAACTGGGCGgca  >  2:1009331/1‑143 (MQ=255)
                                                                                                                                              |                                                                                                                                           
TAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCACGGCGCGGTTCAACGGCGTCGCCCATCAGCGTGGTGAACAACTGGTCGGCA  >  NC_000913/3877522‑3877803

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.