| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3227828 | 64 (0.930) | 3 (0.050) | 3/268 | 10.2 | 4.6% | coding (30/1071 nt) | ygjJ | putative periplasmic protein |
| ? | NC_000913 | = 3227833 | 63 (0.970) | coding (35/1071 nt) | ygjJ | putative periplasmic protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CCTCTTCCTGGATGAGGAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGAAGAAGCACGTCCGGCAGAACATGACGACACAAAAACACCCGCAATTACCTCGACATCTTCTCCTTCATTTCGTTTTTACGGCGAATTAGGGGTTGGTGGATA > NC_000913/3227697‑3227974 | ccTCTTCCTGGATGAGGAGAGGGAAAATAGTTTCTGCCTTTCTATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGctct < 2:872906/143‑1 (MQ=255) ctTCCTGGATGAGGAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGcc < 2:908476/143‑1 (MQ=255) tGGATGAGGAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGtttt < 2:66382/143‑1 (MQ=255) gggATGAGGAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGtttt < 2:441022/142‑1 (MQ=255) ggATGAGGAGAGGGAAAATAGTTTCTGCCGTTATATTTTTATAATTACAACTATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCCCTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTg > 2:881951/1‑143 (MQ=255) tGAGGAGAGGGAAAAGAGTTTCTGCCTTTATATTGTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAAGCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTa < 1:622619/143‑1 (MQ=255) aggggAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTGTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACg < 1:965897/143‑1 (MQ=255) agGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCCGAGCATTACTTGCTCTGCCGTTTTGCTACGCCttt > 2:930079/1‑143 (MQ=255) ggAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCTTTTTTCTACGCCTTTTc > 2:920930/1‑143 (MQ=255) aaaaTAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTCGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTg > 2:171639/1‑143 (MQ=255) aaaaTAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTg < 1:264309/143‑1 (MQ=255) aaaTAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGc < 2:511653/143‑1 (MQ=255) atcgTTTCTGCCCTTATATTCTTATAAGTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCgg < 1:226252/140‑1 (MQ=255) tAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGc < 1:469736/143‑1 (MQ=255) tttCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTTTTTCGGTATAATTTTAAGACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTCCCGTTTTGCTACGCCGTTTCTTCGGCacg > 1:533569/1‑141 (MQ=255) ccTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGgcgagca > 2:396996/1‑140 (MQ=255) cTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAgaagaa < 2:802827/143‑1 (MQ=255) cTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAgaagaa > 2:386976/1‑143 (MQ=255) tttACATCTTTATAATTACACCGACAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGaagaag < 2:132513/143‑1 (MQ=255) ttATATTTTTATAATTACAACGATAAAAGGCTGTACTTTGTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGAAGAAGc < 2:19092/143‑1 (MQ=255) atatTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATTACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGAAGAAGCAc < 1:1044292/143‑1 (MQ=255) atatTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGAAGAAGCAc < 2:575609/143‑1 (MQ=255) ttttATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGATTTGCTACGCCTTTTCTGCGGCAGGAGAAGAAGCACGTcc > 2:948954/1‑143 (MQ=255) ttttATAATTACAACGATAAAAGGCTGTACTTGTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGAAGAAGCACGTcc < 2:288787/143‑1 (MQ=255) ttttAAAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGCAGAGGCACGTcc > 2:18614/1‑143 (MQ=255) taATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTACCACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGGCGAAGCCCGTCCGGcct > 2:232803/1‑141 (MQ=255) caaTTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCGGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGAAGAAGCACGTCCGGCAg < 2:85181/142‑1 (MQ=255) aTTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGAAGAAGCACGTCCGGCAGac > 2:800006/1‑142 (MQ=255) ttACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGAAGCAGCACGTCCGGCAGAAc > 2:907809/1‑143 (MQ=255) aaCGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCCCTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGAAGAAGCACGCCCGCCAGCACATga > 1:448546/1‑143 (MQ=255) gaaaaaaGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGAAGAAGCACGTCCGGCAGAACATgacga < 1:660677/140‑1 (MQ=255) tAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAGTGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGAAGAAGCACGTCCGGCAGAACATGACGaca > 2:957033/1‑143 (MQ=255) ggCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGAAGAAGCACGTCCGGCAGAACATGACGACACaaaa < 2:973562/143‑1 (MQ=255) gtacgctttcgctAGCTCATGGATCAACACAATGAAATTAACCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGAAGAAGCACGTCCGGCAGAACATGACGACACAAAAacac < 2:1203427/131‑1 (MQ=255) gTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCAACAGAATGGGTACGCCAATTCAGCGTCATGAGAAGAAGCACGTCCGGCAGCACATCACGCCCCAAacacac > 2:936984/1‑143 (MQ=255) tcTTTTTCTTCAGCTCATGGATTAACACAATGAAATTAACCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGAAGAAGCACGTCCGGCAGAGCATGACGACACAAAAACAccc < 2:307313/142‑1 (MQ=255) tAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGAAGAAGCACGTCCGGCAGAACATGACGACACAAAAACACCCGCAATTACCt < 2:721933/143‑1 (MQ=255) gCTCATGGAGTAACACAATGAAATTAATCACTGCACCATGCAGGGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGAAGAAGCACGTCCGGCAGAACATGACGACACAAAAACACCCGCAATTACCTCg < 1:224737/143‑1 (MQ=255) cTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGAAGAAGCACGTCCGGCAGAACATGACGACACAAAAACACCCGCAATGACCGCGa > 2:623379/1‑143 (MQ=255) cTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCGACGCCTTTTCTGCGGCAGGAGAAGAAGCACGTCCGGCAGAACACGACGACACGACAACACCCGCAATCACCCCgc > 1:602895/1‑142 (MQ=255) tCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGAAGAAGCACGTCCGGCAGAACATGACGACACAAAAACACCCGCAATTACCTCgcc > 1:218368/1‑141 (MQ=255) tCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGAAGAAGCACGTCCGGCAGAACATGACGACACAAAAACACCCGCAATTACCTCGAc > 1:90865/1‑143 (MQ=255) cATGGATTAACACAAGGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGAAGAAGCACGTCCGGCAGAACATGACGACACAAAAACACCCGCAATTACCTCGACa < 2:1141727/143‑1 (MQ=255) aTGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGAAGAAGCACGTCCGGCAGAACATGACGACACAAAAACACCCGCAATTACCTCGACAt > 2:25121/1‑143 (MQ=255) gATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGACGTTTTGCTACGCCTTATCTGCGGCAGGAGCAGAAGCACGTCCGGCAGAACATGACGACACAAAAACAGCCGCAAGTACCACGACAtctt > 1:491206/1‑143 (MQ=255) aTTAACACAATGAAATTAATCACTGAACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGCGAAGAAGCACGTCCGGCAGAACATGACGACACAAAAACACCCGCAATTACCTCGACAtcttc > 2:303245/1‑143 (MQ=255) tAACACAATGAAATTACTCACTGCACCAGGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTCCGGCAGGAGAAGAAGCACGTCCGGCAGAACATGACGACACAAAAACACCCGCAATTTCCTCGACATCTtctc < 1:796562/143‑1 (MQ=255) tAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGAAGAAGCACGTCCGGCAGAACATGACGACACAAAAACACCCGCAATTACCTCGACATCTtctc < 1:386976/143‑1 (MQ=255) aaCACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGAAGAAGCACGTCCGGCAGAACATGACGACACAAAAACACCCGCACTTCCCTCGACATCTTCTcc > 2:299584/1‑143 (MQ=255) acaATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGAAGAAGCACGTCCGGCAGAACATGACGACACAAAAACACCCGCAATTACCTCGACTTCTTCTCCTTc > 2:34843/1‑143 (MQ=255) caATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGAAGAAGCACGTCCGGCAGAACATGACGACACAAAAACACCCGCAATTACCTCGACATCTTCTCCTTCa > 1:863699/1‑143 (MQ=255) aTGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGAAGAAGCACGTCCGGCAGAACATGACGACACAAAATCACCAGCAATTACCTCGACATCTTCGCCTTCAtt > 2:312209/1‑143 (MQ=255) aaTTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGAAGAAGCACGTCCGGCAGAACATGACGACACAAAAACACCCGCAATTACCTCGACATCTTCTCCTTCATTTCGt > 2:286831/1‑143 (MQ=255) ttAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGCTTTGCTACGCCTTTTCTGCGGCAGGACAACAACCACGTCCGGCAGAACATGACGACACACAAACACCCGCAATTACCTCGACATCTTCTCCTTCATTTCGttt < 2:856993/143‑1 (MQ=255) tCACTGCACCATGCAGAGCATTTCTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGAAGAAGCACGTCCGGCAGAACATGACGACACAAAAACACCCGCAATTACCTCGACATCTTCTCCTTCATTTCCTTTTTAc > 1:489969/1‑143 (MQ=255) cACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCGGGAGAAGAAGCACGTGCGGCAGAACATGGCGCCACAAAAACACCCGCAATTACGTCGACATCTTCTCGCTCACTTCGTTGTTCCg > 2:248385/1‑143 (MQ=255) cttGCAGCGCATTCCTTGCTCCCCCGTGTTGCTACGCCTTTTCTGCTGCAGTAGAAGAAGCACGTCCGGCAGAACATGACGACACAACAACACCCGCAATTACCTCGACATCTTCTCCTTCATTTCGTTTTTACGGCGAATTa < 2:242697/141‑1 (MQ=255) tGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGAAGAAGCACGTCCGGCAGAACATGACGACACAAAAACACCCGCAATTACCTCGACATCTTCTCCTTCATTTCGTTTTTACGGCGAATTAgg < 1:286831/143‑1 (MQ=255) tGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGAAGAAGCACGTCCGGCAGAACATGACGACAAAAAAACACCCGCAATTACCTCGACATCTTCTCCTTCATTTCGTTTTTACGGCGAATTAgg < 2:1010977/143‑1 (MQ=255) cgccgagCATTACTTGCTCTGCCGGTTTGCTACGCCTTTTCTGCGGCAGGACACGAATCACTTCCGGCAGAACATGACGACACAAAAACACCCGCAATTACCTCGACATCTTCTCCTTCATTTCGTTTTTACGGCGAATTAgg < 1:1041240/139‑1 (MQ=255) cATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGAAGAAGCACGTCCGGCAGAACATGACGACACAAAAACACCCGCAATTACCTCGACATCTTCTCCTTCATTTCGTTTTTACGGCGAATTAGGGGTtggt > 1:65040/1‑143 (MQ=255) cATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGAAGAAGCACGTCCGGCAGAACATGACGACACAAAAACACCCGCAATTACCTCGACATCTTCTCCTTCATTTCGTTTTTACGGCGAATTAGGGGTtggt < 2:716413/143‑1 (MQ=255) tACTTGCTCTGCCGCTTTCCTACGCCTTTTCTGCGGCAGGAGAAGAAGCACGTCCGGCAGAACATGACGACACAAAAACACCCGCAATTACCTCGACATCTTCTCCTTCATTTCGTTTTTACGGCGAATTAGGGGTTGGTGGa < 1:930079/143‑1 (MQ=255) cTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGAAGAAGCACGTCCGGCAGAACATGACGACACAAAAACACCCGCAATTACCTCGACATCTTCTCCTTCATTTCGTTTTTACGGCGAATTAGGGGTTGGTGGata < 2:90865/143‑1 (MQ=255) | CCTCTTCCTGGATGAGGAGAGGGAAAATAGTTTCTGCCTTTATATTTTTATAATTACAACGATAAAAGGCTGTACTTTTTCTTTAGCTCATGGATTAACACAATGAAATTAATCACTGCACCATGCAGAGCATTACTTGCTCTGCCGTTTTGCTACGCCTTTTCTGCGGCAGGAGAAGAAGCACGTCCGGCAGAACATGACGACACAAAAACACCCGCAATTACCTCGACATCTTCTCCTTCATTTCGTTTTTACGGCGAATTAGGGGTTGGTGGATA > NC_000913/3227697‑3227974 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |