New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | 780554 = | 62 (1.150) | 10 (0.190) +GAAG |
4/274 | 7.5 | 18.8% | noncoding (1/76 nt) | lysT | tRNA‑Lys |
? | NC_000913 | = 2521004 | 27 (0.500) | noncoding (76/76 nt) | valU | tRNA‑Val | |||||
Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Rejected: Frequency below/above cutoff threshold. |
GCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACATCGAAATTTTTGTTGCGCTCAAGTCTGAAATCAGTAATATATGCCGCCGTTGCCACGGGATATCAAACAAACCGAAAGCAACGAAAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCGAAG > NC_000913/780413‑780692 | gCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACATCGAAATTTTTGTTGCGCTCAAGTCTGAAATCAGTAATATATGCCGCCGTTGCCACGGGATATCAAACAAACCGAAAGCAACGAAAAAGTgg < 2:600560/143‑1 (MQ=255) attattTCTGGTCGTGTCGTGCGAATCATAAGCCGTTGAGTGATCTACATCGAAATTTTTGTTGCGCTCAAGTCTGAAATCAGTAATATATGCCGCCGTTGCCACGGGCTATCAAACAAACCGAAAGCAACTCAAAAGAgggc > 1:182523/1‑142 (MQ=255) ttCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACATCGAAATTTTTGTTGCGCTCAAGTCTGAAATCAGTAATATATGCCGCCGTTGCCACGGGATATCAAACAAACCGAAAGCAACGAAAAAGTGGGTCGTTa > 2:912001/1‑143 (MQ=255) ctggccgtgCGAAGCATAAGCGGTTGAGTGTGCTACCTCGAAATTTTTGTTGCGCGCAAGTCTGAAGTCAGTAATATGTGCCGCCGTTGCCACGGGATATCAAACAAACCGAAAGCAACGAAAAAGTGGGTCGTTAGCTCAGt < 2:234565/138‑1 (MQ=255) cgtggcgtgCGAATCATAAGCAGGTGAGTGATCTACATCGAAATTTTTGTTGCGCTCAAGGCTGAAATCAGTAATATATGCCGCCGTTGCCACGGGATATCAAACAAACCGAAAGCAACGAAAAAGTGGGTCGTTAGCTCAGt < 1:905603/143‑1 (MQ=255) gtcgtgCGAATCATAAGCAGTTGAGTGATCTACATCGAAATTTTTGTTGCGCTCAAGTCTGAAATCAGTAATATATGCCGCCGTTGCCACGGGATATCAAACAAACCGAAAGCAACGAAAAAGTGGGTCGTTAGCTCAGTTgg < 1:33433/143‑1 (MQ=255) gtgCGAATCATAAGCAGTTGAGTGATCTACATCGAAATTTTTGTTGCGCTCAAGTCTGAAATCAGTAATATATGCCGCCGTTGCCACGGGGTATCAAACAAACCGAAAGCATCGACTAAGTGGGTCGTTAGCTCGGTTGGTag > 2:40063/1‑143 (MQ=255) gtgCGAATCATAAGCAGTTGAGTGATCTACATCGAAATTTTTGTTGCGCTCAAGACTGAAATCAGTAATATATGCCGCCGTTGCCACGGCATATCAAAAAAACCGAAAGCAACGAAAAAGAGGGTCGTTacacccgacggtac > 1:939073/1‑130 (MQ=255) gAATCATAAGCAGTTGAGTGATCTACATCGAAATTTTTGTTGCGCTCAAGTCTGAAATCAGTAATATATGCCGCCGTTGCCACGGGATATCAAACAAACCGCAAGCCCCGCTACTGTGGCTCGTTAGCTCAGATGGTAAAGCa > 2:39807/1‑143 (MQ=255) gAATCATAAGCAGTTGAGTGATCTACATCGAAATTTTTGTTGCGCTCAAGTCTGAAATCAGTAATATATGCCGCCGTTGCCACGGGATATCAAACAAACCGCAAGACACGAAAAAGTGGGTCGCTCACTCAGTCGGTAGAGCa > 1:861550/1‑143 (MQ=255) aaTCATAAGCAGTTGAGTGATCTACATCGAAATTTTTGTTGCGCTCAAGTCTGAAATCAGTAATATATGCCGCCGTTGCCACGGGATATCAAACAAACCGAAAGCAACGAAAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCAg > 2:624444/1‑143 (MQ=255) aaGCAGTTGAGTGATCTACATCGAAATTTTTGTTGCGCTCAAGTCTGAAATCAGTAATATATGCCGCCGTTGCCACGGGATATCAAACAAACCGAAAGCAACGAAAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACt > 2:885413/1‑143 (MQ=255) gaGTTGGGTGAGCAACATCTAAATGGTGGTTGCTCTCAAGGCTGAAATAGGTAACATGTGCCGCTGTTGCCACGGGATATCAAACAAGCCGAAAGCAACGAAAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACtttt < 1:146460/142‑1 (MQ=25) cAGTTAAGTGATCTACATCGAAATTTTTGTGGCGCTCAAGTCTGAAATCAGTAATATATGCCGCCGTTGCCACGGGATATCAAACAAACCGAAAGCAACGAAAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACtttt < 1:428885/143‑1 (MQ=255) gAGTGATCTACATCGAAATTTTTGTTGCGCTCAAGTCTGAAATCAGTAATATATGCCGCCGTTGCCACGGGATATCAAACAAACCGAAAGCGACGAAAAAGCGGGTCCTTAGCCCAGCTGGGAGAGCAGTTGACTGTTAAACa > 1:277016/1‑143 (MQ=255) gAGTGATCTACATCGAAATTTTTGTTGCGCTAAAGTCTGAAATCAGTAATATATGCCGCCGTTGCCACGGGATATCAAACAAACCGAAAGCAACGAAAAAGTGGGTCGTTAGCTCAGTAGGTAAAGAAGTTGACTTTTAATCa > 1:865635/1‑143 (MQ=255) gTGATCTACATCGAAATTTTTGTTGCGCTCAAGTCTGAAATCAGTAATATATGCCGCCGTTGCCACGGGATATCAAACAAACCGAAAGCAACGAAAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAAt > 2:749237/1‑143 (MQ=255) gATCTACATCGAAATTTTTGTTGCGCTCAAGTCTGAAATCAGTAATAGATGCCGCCGTTGCCACGGGATATCAAACAAACCGAAAGCAACGAAAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTg < 2:819608/143‑1 (MQ=255) gcTACATCGAAATTTTTGCTGCGCTCAAGGCTGAAATCAGTAATATATGCCGCCGTTGCCACGGGGTATCAAACAAACCGAAAGCAACGAAACCGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGt < 1:272246/142‑1 (MQ=38) ctgcgttgaatttttttGTT‑CGCTCAAGTCTGAAATCAGTAATATATGACGCCGTTGCCACGGGATATCAAACAAACCGAAAGCAACGAAAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTc < 1:109451/131‑1 (MQ=37) tACATCGAAATTTTTGTTGCGCTCAAGTCTGAAATCAGTAATATATGCCGCCGTTGCCACGGGATATCAAACAAACCGAAAGCAACGAAAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGCCTGTTAATCAATTGGTCg > 2:334500/1‑143 (MQ=255) tACATCGAAATTTTTGTTGCGCTCAAGTCTGAAATCAGTAATATATGCCGCCGTTGCCACGGGATATCAAACAAACCGAAAGCAACGAAAAAGTGGGTCGTTAGCGCAGTTGGTAGAGCAGATGACTTTTAATCAATTGGACg > 1:350768/1‑143 (MQ=255) atcgccaTTTTTCGTTCGCTCAAGTCTGAAATCAGTAATATATGCCGCCGTTGCCACGGGATATCAAACAAACCGAAAGCAACGAAAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAg < 1:615671/137‑1 (MQ=37) aTCGAAATTTTTGTTGCGCTCAAGTCTGAAATCAGTAATATATGCCGCCGTTGCCACGGGATATCAAACAAACCGAAAGCAACGAAAAAGTGGGTCGTCAGCTCAGTTGGTGGAGGAGTTGACTTTTAATCAATTGGTAGCAg > 2:397387/1‑143 (MQ=255) cGAAATTTTTGTTGCGCTCAAGTCTGAAATCAGTAATATATGCCGCCGTTGCCACGGGATATCAAACAAACCGAAAGCAACGAAAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGt < 2:677300/143‑1 (MQ=255) aaaTTTTTGTTGCGCTCAAGTCTGAAATCAGTAATATATGCCGCCGTTGCCACGGGATATCAAACAAACCGAAAGCAACGAAAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTc > 2:556355/1‑143 (MQ=255) aTTTTTGTTGCGCTCAAGTCTGAAATCAGTAATATATGCCGCCGTTGCCACGGGATATCAAACAAACCGAAAGCAACGAAAAAGTGGGTCGTTAGCTAAGTTGGTAGAGCAGTTGACTTTTAATACATTTGTCGCAGCTTCGa > 2:876228/1‑143 (MQ=38) ttttGCTGCGCTCAGGCCTGCAATCAGTATTATATGCCGCCGTCGCCACGTGATATCAAACAAACCGAAAGCAACGAAAAAGTGTGTCGTGAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGTTCGCAGGTTCGAAt < 1:199853/143‑1 (MQ=25) tggttgCGCTCAAGTCTGAAATCAGTAATATATGCCGCCGTGGCCACGGGATATCAAACAAACCGAAAGCAACGAAAAAGTGGGTCGGTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATcc < 1:552132/141‑1 (MQ=255) tgttgCGCTCAAGTCTGAAATCAGTAATATATGCCGCCGTTGCCACGGGATATCAAACAAACCGAAAGCAACGAAAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCt < 2:454466/143‑1 (MQ=255) tgCGCTCAAGTCTGAAATCAGTAATATATGCCGCCGTTGCCACGGGATATCAAACAAACCGAAAGCAACGAAAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCa < 2:147088/143‑1 (MQ=255) gcTCAAGTCTGAAATCAGTAATATATGCCGCCGTTGCCACGGGATATCAAACAAACCGAAAGCAACGAAAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCAcca > 2:487826/1‑141 (MQ=255) gcTCAAGTCTGAAATCAGTAATATATGCCGCCGTTGCCACGGGATATCAAACAAACCGAAAGCAACGAAAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGa > 2:785731/1‑143 (MQ=255) agtacgAAATCACTAATATATGCCGCCTTTGCCACGGGATATCAACCAAACCGAAAGCAACGAAAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACccac < 1:297708/138‑1 (MQ=255) tCTGAAATCAGTAATATATGCCGCCGTTGCCACGGGATATCAAACAAACCGAAAGCAACGAAAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACccacca > 2:903734/1‑143 (MQ=255) tGAAATCAGTAGTATATGCCGCCGTTGCCACGGGATATCAAACAAACCGAAAGCAACGAAAAAGTGGGTCGTGAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAAt < 2:146366/143‑1 (MQ=255) gAAATCAGTAATATATGCCGCCGTTGCCACGGGATATCAAACAAACCGAAAGCAACGAAAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATc < 1:624444/143‑1 (MQ=255) atgcAGTAATCCATGCCGACGTGGCGGCGGTAGACCATACGATCCGGACGCCACCAAACAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACccaccagtttt < 1:785731/140‑6 (MQ=2) agcaaTATAGGCCGCCGTTGCAACGCGATATCAAACAACCCGAAAGCAACGAAAAAGTGGGTCCTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAg < 1:161524/140‑1 (MQ=21) aGTAATATATGCCGCCGTTGCCACGGTATATCAAACAAACCGCAAGCAACGAAAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTACTCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAg < 1:831409/143‑1 (MQ=255) gccgttgTTGTCACGGGATATAAAACAAACCGAAAGCAACGAAATAGTGGGTCGGTAGCTCAGTTGGTAGTGCAGTTGACTTTTAATCAATTGGTCGTAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCgg < 1:718714/137‑1 (MQ=21) gccgccGTTGCGACGGAATATCAAATATGCCGAAAGCAACGAAAAAGTGTGTCGTTAGCTCAGTTGGTAGAGCAGTCGACTTTTAATCAACTGGGCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCgg < 1:437653/143‑1 (MQ=21) ccgccgTTGCCACGGGATATCAAACAAACCGAAAGCAACGAAAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGCAGCACCACACGCTCAGGGGGAAGCggg > 1:866138/1‑142 (MQ=21) ccgccgTTGCCACGGGATATCAAACAAACCGAAAGCAACGAAAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGGGGCGgt > 2:124593/1‑143 (MQ=255) gCCACGGGATATCAAACAAACCGAAAGCAACGAAAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTCACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAAc < 2:600737/143‑1 (MQ=255) cACGGGATATCAAACAAACCGAAAGCAACGAAAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGGGGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTCGCTAAAGCGGAGGCggacgtagaccgg > 1:464704/1‑132 (MQ=18) cGGGATATCAAACAAACCGAAAGCAACGAAAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTACGCTCTAAACGGTAGTAAAACGtca > 2:795264/1‑141 (MQ=21) cGGGATATCAAACAAACCGAAAGCAACGAAAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGa < 2:619517/143‑1 (MQ=255) ggATATCAAACAAACCGAAAGCAACGAAAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCCGTTAACTCATAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAg < 2:441662/143‑1 (MQ=255) gATATCAAACAAACCGAAAGCAACGAAAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGCCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAgg > 2:837795/1‑143 (MQ=255) tCAAACAAACCGAAAGCAACGAAAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATaa < 2:919142/143‑1 (MQ=255) caaacaagCCGAAAGCGACGAAAAAGTGGGTTGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGGTCGAATCCTGCACGACCCACCAATTGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAAc < 1:223089/143‑1 (MQ=21) acaaacCGAAAGCAACGAAAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGtt < 2:582498/143‑1 (MQ=255) aaacCGAAAGCAACGAAAAAGTGGGTCGTTAGCTCAGTCGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAACCGTGAAGGATAACGTTGc > 1:136891/1‑143 (MQ=255) tgAAAGTAACGAAACAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGa < 1:123313/142‑1 (MQ=255) aaGCAACGAAAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCa > 2:69846/1‑143 (MQ=255) cAACGAAAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTCGTTACGGCGGAGGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACg > 1:709263/1‑143 (MQ=18) aCGAAAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCAGGAGAAAAGGc > 2:379029/1‑143 (MQ=255) cGAAAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGTAACGTTGGAGGCGGTTGTAAAACGTGAAGGATAACGGTGCCCGAGCAACGGcc > 1:326413/1‑143 (MQ=17) cGAAAAAGTGGGTCGTTAGCTCAGTCGGTAGAGCAGTTGACGTTTAATCAATAGCGAGTATCCTCGAAGCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGcc < 2:218744/143‑1 (MQ=255) cGAAAAAGTGGGTCGTGAGCTCAGTTGGTAGAGCAGTTGACCTTTAATCAATTGGTCGCAGGTCCGAATCCTGCACGACCCACCAACCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGctcatgcaacgtta < 2:277016/143‑14 (MQ=21) aactGGGCCGTTAGTGCAGTTGGTAGAGTAGTTGACATTGAATCAATTTGTCGGAGGGTCGAAGGCGGCACGAACCAACAATTGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCGAAg < 1:159718/140‑1 (MQ=18) | GCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACATCGAAATTTTTGTTGCGCTCAAGTCTGAAATCAGTAATATATGCCGCCGTTGCCACGGGATATCAAACAAACCGAAAGCAACGAAAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCGAAG > NC_000913/780413‑780692 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |