New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3683801 =	30 (0.730)	5 (0.130)	5/272	4.8	15.2%	coding (1817/1989 nt)	yhjK	cyclic‑di‑GMP phosphodiesterase
	?	NC_000913	3683817 =	27 (0.690)					coding (1801/1989 nt)	yhjK	cyclic‑di‑GMP phosphodiesterase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GGAGTTCGGGTGGCGCTGGATGATTTCGGCATGGGCTACGCAGGGCTGCGTCAGCTGCAGCATATGAAATCGTTGCCAATCGACGTACTGAAAATCGACAAAATGTTTGTTGAAGGCTTGCCGGGAGATAGCAGCATGATTGCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3683946‑3683801 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgctgcTATCTCCCGGCAAGCCTTCAACAAACATTTTGTCGATTTTCAGTACGTCGATTGGCAACGATTTCATATGCTGCAGCTGACGCAGCCCTGCGTAGCCCATGCCGAAATCATCCAGCGCCACCCGAACTCCGGCATTG  >  NC_000913/3683817‑3683953                                                                                                                                                                                                                                                                                             GGAGTTCGGGTGGCGCTGGATGATTTCGGCATGGGCTACGCAGGGCTGCGTCAGCTGCAGCATATGAAATCGTTGCCAATCGACGTACTGAAAATCGACAAAATGTTTGTTGAAGGCTTGCCGGGAGATAGCAGCATGATTGC                                                                                                                                              <  1:607896/143‑1    GTTCGGGTGGCGGGGGATGATTTCGGCAGGGGCTACGCAGGGCTGCGTCAGCTGCAGCATAGGAAATCGTTGCCAATCGACGTACTGAAAATCGACAAAATGTGTGTGGAAGGCTTGCCGGGAGATAGCAGCATGATTGCTGC                                                                                                                                           <  2:33198/143‑1                                                                                                    AAAATGTTTGTTGAAGGCTTGCCGGGAGATAGCAGCATGATTGCTGCTATCTCCCGGCAAGCCTTCAACAAACATTTTGTCGATTTTCAGTACGTCGATTGGCAACGATTTCATATGCTGCAGCTGACGCAGCCCTGCGTAGC                                           >  1:620942/1‑143                                                                                                             GTTGAAGGCTTGCCGGGAGATAGCAGCATGATTGCTGCTATCTCCCGGCAAGCCTTCAACAAACATTTTGTCGATTTTCAGTACGTCGATTGGCAACGATTTCATATGCTGCAGCTGACGCAGCCCTGCGTAGCCCATGCCGA                                  <  2:620942/143‑1                                                                                                                            GGAGATAGCAGCATGATTGCTGCTATCTCCCGGCAAGCCTTCAACAAACATTTGGACGATTTTCAGTACGTCGATTGGCAACGATTACAAATGCTGAAGCTGACGCAGACCTGCGTAGCCCAGGCCGAACTCATCCAACGCga                   >  2:663098/1‑141                                                                                                                                ATAGCAGCATGATTGCTGCTATCTCCCGGCAAGCCTTCAACAAACATTTTGTCGATTTTCAGTACGTCGATTGGCAACGATTTCATATGCTGCAGCTGACGCCGCCCTGCGTAGCCCATCCCGAAATCATCCAGCGCCACCCG               >  1:608744/1‑143                                                                                                                                 TAGCAGCATGATTGCTGCTATCTCCCGGCAAGCCTTCAACAAACATTTTGTCGATTTTCAGTACGTCGATTGGCAACGATTTCATATGCTGCAGCTGACGCAGCCCTGCCTAGCCCATGCCGAACTCATCCAGCGCCCCCCGc              >  2:702617/1‑142                                                                                                                                             TGCTGCTTTCTCCCGGCAAGCCTTCAACAAACATTTTGTCGATTTTTGGTGCGCCCACCGCCAACGATTTCATATGCTGCAGCTGACGCAGCCCTGCGTAGCCCATGCCGAAATCATCCAGCGCCACCCGAACTCCGGCATTG  <  2:710876/143‑1                                                                                                                                                                                                                                                                                             GGAGTTCGGGTGGCGCTGGATGATTTCGGCATGGGCTACGCAGGGCTGCGTCAGCTGCAGCATATGAAATCGTTGCCAATCGACGTACTGAAAATCGACAAAATGTTTGTTGAAGGCTTGCCGGGAGATAGCAGCATGATTGCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3683946‑3683801 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgctgcTATCTCCCGGCAAGCCTTCAACAAACATTTTGTCGATTTTCAGTACGTCGATTGGCAACGATTTCATATGCTGCAGCTGACGCAGCCCTGCGTAGCCCATGCCGAAATCATCCAGCGCCACCCGAACTCCGGCATTG  >  NC_000913/3683817‑3683953

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.