New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1097172 =NA (NA)3 (0.070) 3/278 6.0 12.2% intergenic (+343/+393) ycdU/serX putative inner membrane protein/tRNA‑Ser
?NC_000913 1097188 = 22 (0.540)intergenic (+359/+377) ycdU/serX putative inner membrane protein/tRNA‑Ser
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGT  >  NC_000913/1097039‑1097295
                                                                                                                                     |                                                                                                                           
tggACTCGCTTCGCTCACCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTc                                                                                                                    <  1:406440/141‑1 (MQ=25)
  gACTCCCTCCGCCCCCCCGCCGGGCAGCCCGCTCACCGCGTTCCCGCCCTGTCTAACGGGCTGTCGCCAGTCGCCGCCCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGt                                                                                                                  <  2:224210/143‑1 (MQ=11)
   aCTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCACCCCCCCGGTGTGTGGATCACACGAAAAAAAAGCCCGTACTTTCGTa                                                                                                                 >  1:7081/1‑143 (MQ=255)
     tcgcttcgctCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACg                                                                                                               >  2:334887/1‑143 (MQ=35)
     tcgcttcgctCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCAAAATGGCTGGCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCGCGTACTTTCGTACg                                                                                                               >  2:488531/1‑143 (MQ=255)
      cgcgcggctcccCCTGCGGGCCGCCCGCTCACTGCGTTCACGGTCTGCCCAACTGGCTGTCGCCGGTCGTCCTCCCCCGGTCGAGGCTGCTCATCCCCCCGGTGTGTGCAATACCCGAAAAAAAAGCCCGTACTTTCGTACGa                                                                                                              <  1:294361/137‑1 (MQ=11)
              tcgcCCTGCGGGCAGCCCGCTCCCTGCGTTCACGGTCTGCCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCtcttct                                                                                                      <  2:502168/143‑1 (MQ=25)
                            gtccGCTCAGTGTGTTGAGGGTATGTCCAACTGGCTGTCGCCGGATGTCGACCCCCGGTCGGGGCTTCTCAGCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGt                                                                                        <  2:384304/141‑1 (MQ=11)
                                   cACGGCGTTCTTGGTGTGTCCACTTGGCTGTCGCCAGTTGTCGCCTCCCGATCGGGGTTTCTCATCCCCCCGGTGTGTGCAATACACTAAAAAAGAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAggggg                                                                                 <  1:672132/143‑1 (MQ=11)
                                                 tcggTCCAACTGGCTGTCGCCTGTTGTCGCCCCCCGGTCGGGGCTTCTCATCCCCCCGTTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACtcgctt                                                                   <  1:488531/140‑1 (MQ=255)
                                                     tCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAg                                                                                                             >  1:204282/1‑97 (MQ=38)
                                                                   gCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACttt                                                                                                                     >  1:478099/1‑75 (MQ=40)
                                                                           tCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTa                                                                                                                 >  1:503526/1‑71 (MQ=40)
                                                                           tCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCa                                         >  2:160906/1‑143 (MQ=35)
                                                                             gACCCCCGGTCGCGGCTTCTCAGCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACt                                       <  2:247725/143‑1 (MQ=21)
                                                                              aCCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTg                                      >  2:523981/1‑143 (MQ=34)
                                                                                        ggggCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCg                                                      >  1:576919/1‑117 (MQ=33)
                                                                                        ggggCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCg                                                      <  2:576919/117‑1 (MQ=32)
                                                                                         gggCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGGCCGCTCACTGGGGTCACGGTc                           >  1:501660/1‑143 (MQ=12)
                                                                                         ccgCTTCCCATCCCCCCCGTTGCGGCAATACACGAACAAAAAGCCCGTACTTTCGTACGAGCTCTGCTCTAAATACGGCGGTGAGGGGGGGCTTGACTCGCTGCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTc                           <  2:182929/141‑1 (MQ=11)
                                                                                            cTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTg                         <  2:113878/142‑1 (MQ=32)
                                                                                            cTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTg                         >  1:113878/1‑142 (MQ=32)
                                                                                             ttCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCTCTTCTCTCGCCCTGCGGGCCGCCCGCTCGCTGCGTTCACGGTCTGtg                       >  2:75329/1‑142 (MQ=255)
                                                                                             ttCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGc                                                <  2:115959/118‑1 (MQ=32)
                                                                                             ttCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGc                                                >  1:115959/1‑118 (MQ=32)
                                                                                             ttCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTc                       <  1:160906/143‑1 (MQ=32)
                                                                                                    ccccccGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTgg                >  1:189430/1‑143 (MQ=32)
                                                                                                     cccccGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCCCCTGGc               >  2:467059/1‑143 (MQ=17)
                                                                                                                tgCAATACCCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGACGGTGAGGGGCGGGTTGACTAGCTTAGCTCGCCACGCGGCCAGCCCGCAGACTGGGGTCACGGTCTGTCCAGCTGGCTGCCGCCCGtt    >  2:153293/1‑143 (MQ=11)
                                                                                                                  cAATACACGAAAAAAAAGCCCGTACTTTCGTACGCGCTCTTCTTTAAATCTGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGcgacagccagttgg  <  1:629890/143‑14 (MQ=11)
                                                                                                                                     |                                                                                                                           
TTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGT  >  NC_000913/1097039‑1097295

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.