New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 19794890 (0.000)24 (0.590) 22/284 0.9 100% intergenic (‑274/‑264) insA/uspC IS1 repressor TnpA/universal stress protein
?NC_000913 = 2290111 NA (NA)intergenic (‑32/+1) insH1/yejO IS5 transposase and trans‑activator/pseudogene, autotransporter outer membrane homology,putative transport, Not classified, putative ATP‑binding component of a transport system

TGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTG  >  NC_000913/1979351‑1979624
                                                                                                                                          |                                                                                                                                        
aacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgagagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTaa                                                                                                                                      <  2:373086‑M1/8‑1 (MQ=255)
 acgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTaaa                                                                                                                                     >  2:696078‑M1/135‑143 (MQ=255)
  cgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccGTAATTAAAt                                                                                                                                    <  2:144870‑M1/10‑1 (MQ=255)
        gAATACTCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaa                                                                                                                              <  1:271215‑M1/143‑13 (MQ=255)
           tggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACaaagaaa                                                                                                                           >  1:145219‑M1/125‑143 (MQ=255)
           taatCTAAATGGGATTTTTCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaa                                                                                                                           <  1:637726‑M1/143‑16 (MQ=255)
             atCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTACATAATCATCTGCTATAAATAATCACTTTCATGGAATAGAAGATAAGCTATTTTTCAACAGACACTTACGCCACCGCAAACTAAgcaaagtgcgaacaagt                                                                                                                         >  2:446383‑M1/1‑126 (MQ=255)
             atCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagt                                                                                                                         >  2:677541‑M1/1‑126 (MQ=255)
              cgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGc                                                                                                                        <  1:273195‑M1/22‑1 (MQ=255)
              cgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttcaacagctgtaaacaccagccCTAATTAAATACAAAGAAAGGc                                                                                                                        >  1:395181‑M1/122‑143 (MQ=255)
               gaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGca                                                                                                                       >  2:239046‑M1/121‑143 (MQ=255)
               gaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgctaattcgcaccttccCTAATTAAATACAAAGAAAGGca                                                                                                                       <  1:623130‑M1/23‑1 (MQ=255)
                    cgggaTGTTCCGCACAGTCAACAGTACGCACCGTAAATAATCATCTGCTATAAAGAATCGCTTTCATGCAACACCAGATAAGCTATTTTTAAACAGCCCCTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgat                                                                                                                  <  1:280174‑M1/142‑25 (MQ=255)
                       ggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCaa                                                                                                               >  2:498874‑M1/113‑143 (MQ=255)
                       ggtataagtaggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCaa                                                                                                               >  1:476405‑M1/113‑143 (MQ=255)
                        gtctaaataagctcattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAAc                                                                                                              >  2:181023‑M1/112‑143 (MQ=255)
                         tctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAAAAAGGCAACAATCAACt                                                                                                             <  2:691295‑M1/33‑1 (MQ=255)
                          gTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATAACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCACACAACAAACTAAggaaggtgcgaacaagtccctgatatgaga                                                                                                            >  2:566134‑M1/1‑113 (MQ=255)
                                   ctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACttaatgttaat                                                                                                   >  2:35693‑M1/101‑143 (MQ=255)
                                          aaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACACTCCACTTAATGTTCATGAAATGt                                                                                            <  2:52090‑M1/50‑1 (MQ=255)
                                          aaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGt                                                                                            <  2:275991‑M1/50‑1 (MQ=255)
                                           aggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGCAAGGCAACACTCAACTTCATGTTAATGACATGtt                                                                                           <  1:475802‑M1/51‑1 (MQ=255)
                                           aggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATgta                                                                                           <  2:157862‑M1/51‑2 (MQ=255)
                                              catttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTa                                                                                        >  2:370550‑M1/90‑143 (MQ=255)
                                               tCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACCCACTAAggaaggttcgaacaagtccctgatatgacatcatgcttgtcatctggagcc                                                                                       >  2:26364‑M1/1‑92 (MQ=255)
                                                      ggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATAtt                                                                                >  1:491802‑M1/82‑143 (MQ=255)
                                                        agaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAAAACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAAAGTCTTACATATATTaa                                                                              <  1:208224‑M1/64‑1 (MQ=255)
                                                        agaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgaaccttccCTAATTAAAGACAAAGAAAGGCAACAATCAACTTAATAATAATGAAATGttgtacataagataa                                                                              <  1:208208‑M1/64‑7 (MQ=255)
                                                          aatCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgatatcttttttgtcatctggagccatagaacaggg                                                                            <  1:121469‑M1/143‑63 (MQ=255)
                                                          aaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttcttcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAAcc                                                                            <  2:449383‑M1/66‑1 (MQ=255)
                                                              cacccggtaaaacatgaagaaatgaaatgacttagtcatccgagaagaatttgcccgcttattcgcacctgccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACtt                                                                       >  1:65909‑M1/74‑143 (MQ=255)
                                                                 cggctcaaacatcaagaaatgaaatgactgagtcagccgaaaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGtt                                                                    >  1:570623‑M1/71‑143 (MQ=255)
                                                                    tataAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatga                                                                  <  2:669530‑M1/143‑73 (MQ=255)
                                                                    ctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattagcaccttccCTAATCAAATAGAAAGAAAGGAAACAATCAACTAAATGTTAATGAAATGATTTACATCTAATAACCAACTtgttca                                                                  <  1:250541‑M1/76‑3 (MQ=255)
                                                                      caaacatgaagaaatgaaatgactgagtcagccgagaagactttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATg                                                               >  1:35446‑M1/66‑143 (MQ=255)
                                                                          catgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGga                                                           >  1:333137‑M1/62‑143 (MQ=255)
                                                                             tCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaac                                                         >  2:626906‑M1/1‑62 (MQ=255)
                                                                             gaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGaa                                                        <  2:478207‑M1/85‑1 (MQ=255)
                                                                             gaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGaa                                                        <  2:230394‑M1/85‑1 (MQ=255)
                                                                              aagaaatgaaatgactgagtcagccgagaagaatttccccgtttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAAt                                                       >  2:259755‑M1/58‑143 (MQ=255)
                                                                               agaaatgaaatgactaagtcagccgcgaagaattgccccgcttattagcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATc                                                      >  1:144870‑M1/57‑143 (MQ=255)
                                                                               aCTGTCGTGCCATACCAGATAAGCTATTTTTCAACAGAGACTTACCGCACAACATACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaactt                                                       <  1:527513‑M1/143‑84 (MQ=255)
                                                                                 tttCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagacatagaccagggttcatcatgagtcatcaaattac                                                     >  1:4641‑M1/1‑58 (MQ=255)
                                                                                  aatgaaatgactgcgtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGt                                                   >  2:155924‑M1/54‑143 (MQ=255)
                                                                                   tCATGCAATACCAGATAAGCTATTTTTAAATAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttacct                                                   >  2:576390‑M1/1‑56 (MQ=255)
                                                                                       gCAATACCAGATAAGCTATTTTTAAACAGACACTGACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgc                                               <  2:157964‑M1/143‑92 (MQ=255)
                                                                                            gccaGCTAAGCGAGTTGTAAACAGACACTTACCGCATAACAAACTAAggaaggtgcgaacaactccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgaca                                          <  1:336547‑M1/142‑97 (MQ=255)
                                                                                              cAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagt                                        >  2:198960‑M1/1‑45 (MQ=255)
                                                                                               aGATAAGCTATTTTTAAACAGACACTTACCGCACATGTAACTAAtgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtg                                       >  2:682976‑M1/1‑44 (MQ=255)
                                                                                                   agctgagacgaagctccccgcttattcgcacattccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTACCCACTTGTTTAATGCGGAGAATCAGTACACTATTCTCTTATaa                                  >  1:530098‑M1/37‑143 (MQ=255)
                                                                                                      cTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgaaagtgcattcac                                >  1:489864‑M1/1‑37 (MQ=255)
                                                                                                           tttAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagta                           <  2:567714‑M1/143‑112 (MQ=255)
                                                                                                               tttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAAGGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGaaa                      <  2:268807‑M1/119‑1 (MQ=255)
                                                                                                               aaaagacACTTGCCCCACACAAAAATAAggaatgtaccaacaagtccctgatattagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcg                       <  1:355597‑M1/140‑116 (MQ=255)
                                                                                                                 tccccgcttattcgcaccttccCTAATTAAATACACAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACACATCTTTACCACGTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAAtt                    >  2:451061‑M1/23‑143 (MQ=255)
                                                                                                                  aGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgccagtgaattcagcagtaagcgccg                    >  1:305801‑M1/1‑25 (MQ=255)
                                                                                                                     cgcatatacgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTatat                >  2:472670‑M1/19‑143 (MQ=255)
                                                                                                                      acTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcaccggtacgcgccgccag                >  1:511468‑M1/1‑21 (MQ=255)
                                                                                                                           ttcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGCTCAc          >  1:478207‑M1/13‑143 (MQ=255)
                                                                                                                             cgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAAGTATATGATCACCg        <  1:292511‑M1/133‑1 (MQ=255)
                                                                                                                                accttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGa     >  2:273195‑M1/8‑143 (MQ=255)
                                                                                                                                 aacaaACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaaga     <  2:654015‑M1/143‑134 (MQ=255)
                                                                                                                                   ttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATATTAATGAAATGTTATACAGATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTATCTTATAACTACATTTGAAATTACATGaccaccgagacag  <  1:275256‑M1/139‑7 (MQ=255)
                                                                                                                                   tcacctaaggaaggtgcgaacaagtccctgatatgagataatgttggtcgtatggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgaccgtgaattcagcagtaggcgccgtcgagcccgaaacgaga   >  1:391951‑M1/5‑8 (MQ=255)
                                                                                                                                          |                                                                                                                                        
TGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTG  >  NC_000913/1979351‑1979624

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.