| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 5 (0.120) | 36 (0.990) | 30/252 | 0.2 | 89.5% | coding (290/630 nt) | stfP | e14 prophage, uncharacterized protein |
| ? | NC_000913 | 1209619 = | 4 (0.110) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related | |||||
GCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAG > NC_000913/1209486‑1209760 | tttgcggcattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGaa > 2:74629‑M2/134‑143 (MQ=255) gcggcattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAAt < 2:102481‑M2/13‑1 (MQ=255) tGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATga < 2:307373/143‑1 (MQ=255) ccaccgccactgcatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctcatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAAt < 1:158469‑M2/21‑1 (MQ=255) acccccactgaatgattactgattgctcaatacaaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagtgttgctccttctcccaaaccaaCGTCTatgaaaatgagaaagtaa > 2:21351‑M2/121‑135 (MQ=255) gggTATCCGTCAGCAGAAAAAGCGGCACCATTGCAATTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACa < 2:48726/143‑1 (MQ=255) cccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACaa < 2:272061‑M2/26‑1 (MQ=255) cctcACCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCATACCAACGTTTATGAAAATGAAGAAATAACAAGCAAAt < 2:297996/141‑1 (MQ=255) tgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGCTTCTGAAAATGAAGACAGAACacacaaacgcc > 1:245922‑M2/109‑139 (MQ=255) gattactgattgctcaataccaccaatcataaccggtatagctatgagaccggtgcgtcctaatgtagccgttgctgcattccgttttgctccttctcccaaccccaCGTTTATGAAAATAAAGAAATAACAAACAAATGCca > 2:537676‑M2/108‑143 (MQ=255) tactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGcatca > 2:182277‑M2/105‑143 (MQ=255) tgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCCTTc > 2:576354‑M2/102‑143 (MQ=255) tgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTc > 2:566371‑M2/102‑143 (MQ=255) aaaGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTcc > 2:703961/1‑143 (MQ=255) tcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccatctcccaaaccaaCGTTTAAGAAAAGTAGGTAATAACAAGCAAATGGCATCATTCCTGCttt > 2:362767‑M2/95‑143 (MQ=255) caataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCtttt < 1:254305‑M2/50‑1 (MQ=255) ccaccaaccataaccggtatagctatgacaccggtgcgtcctaacgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAg < 2:23576‑M2/55‑1 (MQ=255) accaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAggg < 1:333716‑M2/57‑1 (MQ=255) ccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaccccaCCTTTATGAAAATTAAGAAATAACAATCAAATTGCCTCATTACTCCTTCtaccaaaga > 2:309462‑M2/86‑139 (MQ=255) taaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgaggtttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTaa < 2:20775‑M2/65‑1 (MQ=255) ccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACAt < 1:157498‑M2/68‑1 (MQ=255) atagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGCTTTAACATGCTTa > 2:137789‑M2/71‑143 (MQ=255) aaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGt < 1:62468‑M2/83‑1 (MQ=255) ggtgcgtcctgatgttgccggtgttgcattgagttttgctccttctacgaagctaaCGTTTATGAAAATGAAGAAATTACAAGTAAATGGTATCATTTCTGTTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTAcgc < 1:230379‑M2/87‑1 (MQ=255) cgtccgagtgcagccgttgcggcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAACTAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTAt < 1:407166‑M2/91‑1 (MQ=255) ctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGCAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGCGATTTACCATGCTTATTGGCTCTGCCCGCGTctcagc > 2:186622‑M2/49‑141 (MQ=255) agtgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACCAGCAAATGGCATCATTCCTGCTTTTACCAGGGGTATTTAACATGCTTATTGACTATGTACGAGTATcaacaa > 1:322498‑M2/47‑143 (MQ=255) atggaggcgttgctgcagtggggtggggtcgttcgcccaaaccaaCGTGTATGAAAATGAAGACATAACAAGCGAATGGCATCATGCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACaaa < 2:217154‑M2/98‑1 (MQ=255) cgtcgctgcattgagttttgccccctcccaggtttcagCGTGGATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAg < 2:130638‑M2/105‑1 (MQ=255) ttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGaa < 1:323606‑M2/107‑1 (MQ=255) tggctggagtgagttttgctccttcccccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGaa < 2:110871‑M2/107‑1 (MQ=255) tgcattgaattgtgctccttctcccaaaccacCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAAcaca < 1:233134‑M2/111‑1 (MQ=255) attgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGAt < 1:566371‑M2/114‑1 (MQ=255) ttgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATc < 1:300384‑M2/115‑1 (MQ=255) ttgaggtgtgctcctgcgccaaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATc < 2:191636‑M2/115‑1 (MQ=255) ttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACAAAAATATACaa > 1:400696‑M2/24‑143 (MQ=255) gctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTCCAACGTa > 2:22036‑M2/20‑143 (MQ=255) tccttctcccaaaccaaCGTTTCTGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGCCCAGCACGCAGAGCTGCAACGTAAt > 2:279089‑M2/18‑143 (MQ=255) tccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGTGGATTTAACATGCTTATTGGCTTTGTACGCGTATCAACAAATTACCCGAGCACGGATCTACAACgaaaa > 2:28116‑M2/18‑142 (MQ=255) tccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGTTTTTTTAAGCTTTCAACCGAAGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAAt > 2:711526‑M2/18‑143 (MQ=255) cttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACTAGAACACAGATCTACAACGTAATgc > 1:328780‑M2/16‑143 (MQ=255) ctcccaacccaaCTGTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCt < 2:245922‑M2/131‑1 (MQ=255) ccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGaa > 1:160656‑M2/10‑143 (MQ=255) aCGTTTATGAAAATGAAGAAATAACAAGCAAATGTCATCATTCCTGCTTTTACCAGGGGGATTTAACATTCTTATGAGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAg < 1:244808‑M2/142‑1 (MQ=255) | GCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAG > NC_000913/1209486‑1209760 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |