New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2775871 =	36 (0.880)	3 (0.080)	3/268	5.8	7.9%	intergenic (+57/‑46)	ypjI/yfjX	pseudogene, CP4‑57 putative prophage remnant,Phage or Prophage Related/CP4‑57 prophage, putative antirestriction protein
	?	NC_000913	2775894 =	36 (0.930)					intergenic (+80/‑23)	ypjI/yfjX	pseudogene, CP4‑57 putative prophage remnant,Phage or Prophage Related/CP4‑57 prophage, putative antirestriction protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGAAGGTTTTAACCGCTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATTTGAGTTGAGCGTAACGCAGGTACCCGATGAACAGCATATCCGCTTCTGGCCGCAGCACTTTGGCACCAT  >  NC_000913/2775754‑2776035                                                                                                                                             |                                                                                                                                              tgcacgTTTTAACCGCTATATCCACAGGTCAGGCATCCGCACCGACACCTCCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGtttt                                                                                                                                             <  1:74384/138‑1 (MQ=255)   aaGGTTTTAACCGCTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCAATCGCCGCTGGCGtttttt                                                                                                                                           >  2:554369/1‑143 (MQ=255)         ttAACCGCTATATCCACATGTCAGGCATTCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCAc                                                                                                                                     <  2:547388/143‑1 (MQ=255)          tatcctcTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACACTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGtttttacttctgt                                                                                                                                    <  1:16841/137‑9 (MQ=38)             gcGCTATATGCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGgag                                                                                                                                 <  2:494946/142‑1 (MQ=255)              cGCTATATCCACAGGTCAGACATCCGCACCGACACCTTCCCCCGCTGACTCAGAATCATTTACCAGCAACATCTCACCCTCCCAAACGCGCCTTATTACCTAATACACCAGCAATCCCCACTAACGCTTATCATTCAcaccaa                                                                                                                                >  1:434678/1‑138 (MQ=255)                cTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACCTTTCACCTTCCCAAACGCGCTTTATTCCCTCATACGACCGCCATCGCCGCTGGCGTGATGCAGTCACGGAGTCa                                                                                                                              >  1:398687/1‑143 (MQ=255)                cTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTCACCTTCCCACACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACa                                                                                                                              >  2:35653/1‑143 (MQ=255)                      cctccgctcgtgCATCTTCACCGACACCTTCCCCCGCTGCCTCCGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCa                                                                                                                        <  1:437347/132‑1 (MQ=37)                          aGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGac                                                                                                                    <  1:168302/143‑1 (MQ=255)                            gTCCGGCAGCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGacaa                                                                                                                  <  1:345855/143‑1 (MQ=255)                                 gCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTGTTATTCAAGACGACATACCCACGGCAacacag                                                                                                             >  1:5725/1‑143 (MQ=38)                                 gCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTGACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAccacag                                                                                                             >  2:682048/1‑143 (MQ=255)                                        cACCGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTCTTTATTCACCGAAACATACTCATGACAACACAGACACAGt                                                                                                      >  1:575592/1‑143 (MQ=255)                                          cagACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTGCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGATATACCCATGACAACACAGACACAGTAc                                                                                                    <  1:76074/141‑1 (MQ=255)                                                ccgtCCCCCGCTGTCTCCGAGGCATTTACCGGCGACAGGTCGCCTTCCCGAACGCGCTTCATTACCTCGGACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACAGTCCCTTGTCAACACAGACACAGTACGACCTc                                                                                              <  1:351666/140‑1 (MQ=21)                                                               tCCGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCCCGGAGACATACCCATGACCACACCGCCCCCGTCCCGCCTCGTTCCCGCttcccgc                                                                               >  2:17488/1‑137 (MQ=25)                                                                ccGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGAt                                                                              <  2:655554/143‑1 (MQ=255)                                                                       aTTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACCACACAGACACAGTACGACCTCGTACCCCATAGCGGCTCCGaact                                                                       >  1:378451/1‑141 (MQ=25)                                                                        tttACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAAttt                                                                      <  2:460648/143‑1 (MQ=255)                                                                          tACCAGCAACACTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATttga                                                                    <  2:613291/143‑1 (MQ=255)                                                                               gccgcATTCCACCTTCCCAGACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGCGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATttgagttga                                                               <  1:348520/139‑1 (MQ=255)                                                                                    aTTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTGTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAAGTTGGGTTGAGCGTa                                                          >  2:85202/1‑143 (MQ=255)                                                                                       gggggtgcgtgatcgcgCTTTATTACTTCTTACGCCAGCCAGCGCCGCTGGCGTTTTTGATTCACGGAGATATACCCATGACAACACAGACACAGTGCGACCTCGTACCCGCTAACGGATCCGAATTTGAGTTGAGCGTAACg                                                       <  1:690614/130‑1 (MQ=255)                                                                                         aCCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTACCGGACCCGACTTTGAGTTGACCGTAACGCa                                                     >  2:348440/1‑143 (MQ=255)                                                                                          ccTGCCCGAACGCGCGTTATTGCCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATTTGAGTTGAGCGTAACGCAg                                                    <  2:169884/143‑1 (MQ=255)                                                                                           cTTCCCACACGCGCTTGATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTGATTCACGGAGCCATACCCATGACCACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATTTGAGTTGAGCGTAACGCAgg                                                   <  2:281972/143‑1 (MQ=25)                                                                                           cTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGAt                                                                              >  1:57179/1‑116 (MQ=255)                                                                                           cTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGAt                                                                              <  2:57179/116‑1 (MQ=255)                                                                                                   gcgcgcgTTCTTTCCTCATACGCCAGCCATCGCCGCTGGCGCTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATTTGAGTTGAGCGTAACGCAGGTACCCGAt                                           <  1:485946/142‑1 (MQ=255)                                                                                                        cTTTATTCCCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATTTGAGTTGAGCGTAACGCAGGTACCCGATGAACa                                      <  2:575592/143‑1 (MQ=255)                                                                                                                 cTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATTTGAGTTGAGCGTAACGCAGGTACCCGATGAACAGCATATCCg                             >  2:224904/1‑143 (MQ=255)                                                                                                                       cGCCAGCCATCGCCGCTTGCGTGTTTTATTCACGCAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGCATTTGAGTTGAGCGTAACGCAGGTACCCGATGAACAGCATATCCGCTTCTg                       <  1:300273/143‑1 (MQ=255)                                                                                                                        gccagccaTCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACCCAGTACGTCCTCGTACCCGCTAAAGAATCCGACATTGAATTGAGCGTAACGCAAGTACCCGATGAACACCATATCACCTTATgg                      >  2:380760/1‑143 (MQ=18)                                                                                                                        gccagccaGCGCCGCGGGCGTTAGTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATTTGAGTTGAGCGTAACGCAGGTACCCGATGAACAGCATATCCGCTTCTgg                      <  2:393966/143‑1 (MQ=255)                                                                                                                           agccaTCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATTTGAGTTGAGCGTAACGCAGGTACCCGATGAACAGCATATCCGCTTCTGGCCg                   <  2:56193/143‑1 (MQ=255)                                                                                                                                       tGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTGGTTGCTTAGTGGTCCGAACTTGAGTTGAGCGTAACGCAGGTACCCGATGAACAGCATATCCGCTTCTGGCCGCAGCCCTCTGGc       >  1:662360/1‑143 (MQ=25)                                                                                                                                            ttttttATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACCGGTACGCATTTGAGTTGAGCGTAACGCAGGTACCCGATGAACAGCATATCCGCTTCTGGCCGCAGCACTTCGGCACCAt  >  1:455930/1‑143 (MQ=25)                                                                                                                                            tttttgATTCACGGAGACATACCCATGACAACACAGACACAGTACGTCCTCGTACCCGCTAACGGATCCGAATTTGAGTTGAGCGTAACGCAGGTACCCGATGAACAGCATATCCGCTTCTGGCCGCAGCACTTTGGCACCAt  <  1:35653/143‑1 (MQ=255)                                                                                                                                             |                                                                                                                                              TGAAGGTTTTAACCGCTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATTTGAGTTGAGCGTAACGCAGGTACCCGATGAACAGCATATCCGCTTCTGGCCGCAGCACTTTGGCACCAT  >  NC_000913/2775754‑2776035

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.