| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,815,858 | Δ82 bp | [rph]–[rph] | [rph], [rph] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3815858 | 3815939 | 82 | 40 [0] | [0] 40 | [rph]–[rph] | [rph], [rph] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3815857 | 0 (0.000) | 38 (1.000) | 32/264 | 0.2 | 100% | pseudogene (24/48 nt) | rph | ribonuclease PH (defective),enzyme, Degradation of RNA, RNase PH |
| ? | NC_000913 | 3815940 = | 0 (0.000) | pseudogene (609/669 nt) | rph | ribonuclease PH (defective),enzyme, Degradation of RNA, RNase PH | |||||
CAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCC > NC_000913/3815799‑3816079 | cacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgccc > 2:540551‑M2/142‑142 (MQ=255)cacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCg < 1:415956‑M2/2‑1 (MQ=255) cacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGt > 2:542571‑M2/141‑143 (MQ=255) ctgcttgctaagcgcaaattcaataaactggcgctgagatggtttcatgccttcgctcctcctcttacgtttctacagacaaaaaaaaggcgcctcatcagtcgccgtaaaaatcagtttgcgaggcccgccttctgcCCTcc > 2:285223‑M2/139‑143 (MQ=255) ttgctaagcgcaaattcaataaactggcgctgataggggctcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTg < 2:298216‑M2/9‑1 (MQ=255) cgagctaagcgcaaattcaataaactgacgctgatatggtttcatgcattcgctcctcatcttacttttctacagacaaaaaagacgactcatcagtcaccttaaaaatcagtttgccagcgccgcctccagcCGCCCCCTGc > 1:478064‑M2/134‑143 (MQ=255) taagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgcctcctccgtctccttaaaaatcaatatgacagcgcagccttcagaCATCACCtacacc > 2:549487‑M2/131‑142 (MQ=255) cgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCaa < 2:253347‑M2/17‑1 (MQ=255) caaattcaataaactggcgctgatatggtttcatgccttcgctcgtcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAatg < 1:167848‑M2/19‑1 (MQ=255) ataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGccc > 1:524469‑M2/117‑143 (MQ=255) gggcgctgatatggtttcatgccttcgctcctcatcttacgtttctacaggcaaaaaaaaggcgacgcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTACCCTGCACTTCAATGATGCGCCCGTCTTc < 1:701958‑M2/33‑1 (MQ=255) cgcttagatggttgcatgccttctctcctcatcttacttttctacagacaaaaaaaaggcgactcatcaggcgccttaaaaatcagtctgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGt < 1:230452‑M2/36‑1 (MQ=255) tcatatggtttcatgcctcccccccgcatctcacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtcat < 2:187189‑M2/39‑1 (MQ=255) cgatatggtgtcatgccttcgcacctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtcat < 2:112812‑M2/39‑1 (MQ=255) atggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCCATGATGCGCCCGTCTTCGGTCATCACt > 2:713762‑M2/101‑143 (MQ=255) tggtttcatgccttcgcgcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTa < 2:388453‑M2/44‑1 (MQ=255) atgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaacaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCCTCTTCGGTCCTCCCTCCGTTCAt > 2:124412‑M2/93‑143 (MQ=255) gccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCATTGATGCGCCCGCCTTCGGTCGTCACTACTTGCATGt > 2:657740‑M2/91‑143 (MQ=255) ccgtcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttggcagcgccgccttctgtCGTCCCCTGCACTTGAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTc < 1:15567‑M2/54‑1 (MQ=255) ttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTCCGTTCATGTCgg > 2:548784‑M2/88‑143 (MQ=255) ttttacttttctacagataaaaaagaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccgtctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGTTCATCACTACGCTCATGTCGGTCTCTGCGGCa < 1:373873‑M2/67‑1 (MQ=255) ttgcttttctacagacaaacaataggcgactcatcagtcgccttaaacatcattttgccagcgccgccctctgaCGTCCTCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCaga < 1:9349‑M2/69‑1 (MQ=255) ctacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgcctgctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTTCGTTCATGTCGGTCTCTGCGGCaga < 2:217943‑M2/69‑1 (MQ=255) acaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGCCTTCAACGTatg > 1:544948‑M2/61‑142 (MQ=255) aaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTTCGGCAGAGTCTTCATCGTAttcaa > 2:54086‑M2/58‑141 (MQ=255) aaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTCCGTTCCTGTCGGTCCCTGCGGCAGACTCTTCAACGTATTacacc > 1:53394‑M2/56‑141 (MQ=255) aaaaggctgctcatcagtcgccttaagaatcagttttccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGAt < 1:506327‑M2/89‑1 (MQ=255) aaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGAt < 2:587057‑M2/89‑1 (MQ=255) gtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCAGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGcc < 1:709893‑M2/105‑1 (MQ=255) ttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCAAGATCGCAAACCGCTTCGCCGTTcac > 2:460897‑M2/33‑143 (MQ=255) tcaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTcac < 2:471471‑M2/111‑1 (MQ=255) aaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGttcacca > 2:468454‑M2/31‑141 (MQ=255) aaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACaa < 2:524469‑M2/113‑1 (MQ=255) aaatcagtttgccagcgccgccttctgcCGTCCCCTACACTCCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAAtt < 2:363537‑M2/115‑1 (MQ=255) aatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACACTTc > 1:199370‑M2/28‑143 (MQ=255) atcagtttgccagcgccgccttctgcCGTCCTCAACAACTGATGGAAGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGCTCTCTGCGCCAGAGGCTTCAACGTATTCTAGATCGCAAACCGCTTCGCCGTTCACCATTcc > 1:624989‑M2/27‑143 (MQ=255) atcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCCTCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAAATGGCAAACCGCTTCGACGTTCACAATTcc > 2:656356‑M2/27‑143 (MQ=255) ttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGa > 2:395152‑M2/21‑143 (MQ=255) cgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCAAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCt > 1:399046‑M2/11‑143 (MQ=255) tgcCGTCCCCTGCATGTCGTTGATGCGCCCGTCTTCGGTCATCACTACGTTCCTGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGTTCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATcc < 1:549487‑M2/140‑1 (MQ=255) | CAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCC > NC_000913/3815799‑3816079 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |