New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 120780516 (0.350)34 (0.830) 28/252 0.4 74.6% coding (305/630 nt) stfP e14 prophage, uncharacterized protein
?NC_000913 = 1209602 9 (0.220)pseudogene (18/501 nt) stfE pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related

GGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGA  >  NC_000913/1207663‑1207947
                                                                                                                                               |                                                                                                                                              
cattacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGCTTGGGAGAAgg                                                                                                                                                <  2:40335‑M1/16‑1 (MQ=255)
 gagCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGa                                                                                                                                               >  1:373231/3‑143 (MQ=255)
  tGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAACCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGct                                                                                                                                              <  1:695030‑M1/143‑3 (MQ=255)
      aGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCGTGGTTTGGGAGAAGGAGCaaa                                                                                                                                          >  2:638277/1‑143 (MQ=255)
        tgtagatctgtgttctggtcattcgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcatattcataaacgTTGGTTTGGGAGAAGCACCAAAAc                                                                                                                                        <  2:350064‑M1/24‑1 (MQ=255)
         gtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACt                                                                                                                                       <  1:693217‑M1/25‑1 (MQ=255)
           agatctgtgttctggtcagttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGGaggagcaagaatca                                                                                                                                     <  1:11001‑M1/27‑7 (MQ=255)
            gatctgtggtctgggcatttggtgatacgcgtacagaggcaataagcatggtagagccccctggtaaaaggaggaatgatgccatttggtggttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCaa                                                                                                                                    >  2:334977‑M1/116‑143 (MQ=255)
            gagaAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCaa                                                                                                                                    <  1:142016/143‑1 (MQ=255)
               aaGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgt                                                                                                                                 <  1:383291‑M1/143‑16 (MQ=255)
               aaGGGGCGGCACGACCAGGTACTTACCGCACTCCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTGTGGCGAGATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgt                                                                                                                                 <  1:184276‑M1/143‑16 (MQ=255)
                tgtgttcgggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATgca                                                                                                                                >  2:142342‑M1/112‑143 (MQ=255)
                aGGGGCGGCACGAGCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcatcacctgtt                                                                                                                                <  2:718230‑M1/143‑17 (MQ=255)
                 gtggctgcaaGACCAGTTACGTAGCGCGCGTCGCGCGCTGGCGGTAAGCCGCAAGAATCCGTTTGGCGATATCAGATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttg                                                                                                                               <  1:323231‑M1/141‑18 (MQ=255)
                 gtggcggcacGACCAGTTACTTATCGCTCTTCGTGCGCTGCTGTTAAGCCGCAAGAAGCCGTTGGGCGATAGCAAATCGGAGGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttg                                                                                                                               <  1:317981‑M1/141‑18 (MQ=255)
                 ggggCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTACGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttg                                                                                                                               <  2:601848‑M1/143‑18 (MQ=255)
                 ggggCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAACCCATGGTTTGGGAGAAGGAGCAAAACTCAATgcag                                                                                                                               >  2:219201/1‑143 (MQ=255)
                 ggggCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGCTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttg                                                                                                                               <  1:34580‑M1/143‑18 (MQ=255)
                 ccggcggcacGACCTGTTACTTACCGCACGTCTCCCGCTGCTGTTAAGCCGTAAGGATCCGTCTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttg                                                                                                                               <  2:1591‑M1/141‑18 (MQ=255)
                    ttctggtcatttgttgatacacgtacatagccaataagcatgttaaatacccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgATGATTTGGGAGACGGCGAAACACGCATTGCAGCaa                                                                                                                            <  2:273725‑M1/36‑1 (MQ=255)
                     tctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggcatgatgccatttgcttgttatttcttcattttcataaacgCTGGTTTGGGAGAAGGAGCAGAACTCAATGCTGCAAc                                                                                                                           <  1:9873‑M1/37‑1 (MQ=255)
                       gcACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcc                                                                                                                         <  2:567810‑M1/143‑24 (MQ=255)
                         aCGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccg                                                                                                                       <  2:190849‑M1/143‑26 (MQ=255)
                           catttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaaagTTGGTTTGGGAGAAGGAGCAAAAATCAATGCAGCAACGGCTAc                                                                                                                     <  2:204995‑M1/43‑1 (MQ=255)
                             tttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCCATGCAGCAACGGCTACAt                                                                                                                   <  2:24798‑M1/45‑1 (MQ=255)
                              cAGTTACTTCCCGTACTTCGCGCGCTGCTGTTTAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttcc                                                                                                                  <  2:468704‑M1/143‑31 (MQ=255)
                                gTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATAGCAAATCGGATGGCACTGTGCAAAATGCTCTCGAAAAACAAGGTGTGAGAGAAGGctctgcattacctgttggtgtcccggttccgt                                                                                                                >  1:716974‑M1/1‑111 (MQ=255)
                                 ttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAAATCAATGCAGCAACGGCTACAGTAgg                                                                                                               <  2:35657‑M1/49‑1 (MQ=255)
                                  tgatatgcgaacataaccaataagcatgttaaatccccctggtaaatgcaggaatgatgccatttgcttgttatttcttcattttcagaaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGa                                                                                                              >  2:592051‑M1/94‑143 (MQ=255)
                                  tgatacgcgtaggtagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGa                                                                                                              >  2:106725‑M1/94‑143 (MQ=255)
                                     tacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGc                                                                                                           >  1:242191‑M1/91‑143 (MQ=255)
                                        gcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCAcc                                                                                                        <  1:596171‑M1/56‑1 (MQ=255)
                                        ccGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCAcc                                                                                                        >  1:187473/1‑143 (MQ=255)
                                        ccGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGCACGCAcc                                                                                                        >  1:641576/1‑143 (MQ=255)
                                         cGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGCCGCACCg                                                                                                       >  1:656447/1‑143 (MQ=255)
                                         cGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGCTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcag                                                                                                       >  2:336170‑M1/1‑102 (MQ=255)
                                           tacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttattgcttcatactcataaacgTTGGTTTGGGAGAAGGAGCAAAACTGAATGCAGCAACGGCTACGGTAGGAAGCACCGGt                                                                                                     <  2:132025‑M1/59‑1 (MQ=255)
                                            acatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGtt                                                                                                    >  2:330648‑M1/84‑143 (MQ=255)
                                              atagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTc                                                                                                  >  1:660501‑M1/82‑143 (MQ=255)
                                                 gcgcgcTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGCAAACCTTGGCTTGGGAGAAGGctctgcatttcctgttggtgtcccggtgccgtgaccttgagccgctctg                                                                                               >  2:466391‑M1/1‑94 (MQ=255)
                                                  cgcgcTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgc                                                                                              >  1:428486‑M1/1‑93 (MQ=255)
                                                   gcgcTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgcc                                                                                             >  1:774945‑M1/1‑92 (MQ=255)
                                                   gcgcTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGAAAACGGCTCTCGAAGACATTGGTGAGGAAGAAGGAGCAACACTCAATGCAGCAACGGCAACATGAGGACGCACCGGTGTCAAAGc                                                                                             >  2:758748/1‑143 (MQ=21)
                                                     ataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATACAGCAACGGCTACATTAGGACGCACCGGTTTCATAACta                                                                                           <  2:492983‑M1/69‑1 (MQ=255)
                                                       tgctgTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGcgctgcattaccagttggtgtcccggttccgtagcctgccgccactccgccaaca                                                                                         >  1:493097‑M1/1‑88 (MQ=255)
                                                           atgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCgg                                                                                     <  1:186844‑M1/75‑1 (MQ=255)
                                                             gttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGtt                                                                                   >  2:66465‑M1/67‑143 (MQ=255)
                                                              ttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTa                                                                                  <  1:170498‑M1/78‑1 (MQ=255)
                                                               aGCCGCAAGAGTCCGTTTGGCGATATCGAGTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggct                                                                                 <  2:599512‑M1/143‑64 (MQ=255)
                                                                 ccGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgg                                                                               >  1:21641‑M1/1‑78 (MQ=255)
                                                                     cccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATtgg                                                                           <  1:625708‑M1/85‑1 (MQ=255)
                                                                     aaGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatg                                                                           <  2:619519‑M1/143‑70 (MQ=255)
                                                                      ccctggtaaaagcaggaatgatgccatttgcttgttatttcttcgttttcatcaacgTTGGTTTGGGAGAGGTAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGTACCTGTTTCATAGCTATACCGGTTATGATtggt                                                                          >  2:15768‑M1/58‑143 (MQ=255)
                                                                       cctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATtggtg                                                                         >  1:465441‑M1/57‑143 (MQ=255)
                                                                        gatCCGTGTGGCGATATCAAGTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaa                                                                        <  1:763078‑M1/142‑73 (MQ=255)
                                                                           ccGTTTGGCGATATCAAGTCGGATGGCACTGTGCAAACGGCTCTCGAAGGTAGGCTTTGTGGAGAAGGctctgcgttacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatgg                                                                     <  1:584599‑M1/143‑76 (MQ=255)
                                                                           ccGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATGAGGACGCACCGGTTTAGTAGCGATACCGGGTAGCATTGGTGGTAt                                                                     >  2:123628/1‑143 (MQ=37)
                                                                            taaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGAGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTAtt                                                                    <  1:156851‑M1/92‑1 (MQ=255)
                                                                            cGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACCCCTTGTGGTCATAGCTATACCGGTTATGATTGGTGGTAtt                                                                    >  2:565343/1‑143 (MQ=37)
                                                                              aaagcaggatggatgccatatgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGa                                                                  >  1:712838‑M1/50‑143 (MQ=255)
                                                                              aaagcaggaatgccggctgttggttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGa                                                                  >  1:294024‑M1/50‑143 (MQ=255)
                                                                              aaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGa                                                                  >  2:159532‑M1/50‑143 (MQ=255)
                                                                               ttGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGAAGAAGGAGCAAAGCTCAATGCACCAACGCCTACATTCGGACGCACCGGTGTCATAGCTACACCGGCTCTGATCGGTGCTagtcag                                                                 >  1:258273/1‑138 (MQ=25)
                                                                               aagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAg                                                                 >  2:596171‑M1/49‑143 (MQ=255)
                                                                                agcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGGCGCACCGGTTTCATAGCTATACCGGTTATGATTGGCGGTACTGAGc                                                                <  2:525166‑M1/96‑1 (MQ=255)
                                                                                    ggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCACTGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATc                                                            >  2:106727‑M1/44‑143 (MQ=255)
                                                                                     atatCAAAGCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATGAGGACGCACCGGTGTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCa                                                           <  1:159288/143‑1 (MQ=255)
                                                                                         gatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTCTTGAGCAACCAGTaa                                                       <  1:792102‑M1/105‑1 (MQ=255)
                                                                                         gatgccatttgcgtgttatttcttcattttcataatcgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTaa                                                       >  1:105325‑M1/39‑143 (MQ=255)
                                                                                         cAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctg                                                       >  1:241703‑M1/1‑54 (MQ=255)
                                                                                          aaaTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTATGGGAGAAGGctctgcattacctgttggtaacaaggatgcgttgccttcagccgctccgccaacagactggctgaaatgcaatggtgccgctttttctgc                                                      >  1:800449‑M1/1‑53 (MQ=255)
                                                                                           aaTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggcggcaatgcagtggtgccgcgttttcggcg                                                     >  1:54818‑M1/1‑52 (MQ=255)
                                                                                           aaTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggcgggctggaatgcaagggtgccgctttttctgct                                                     >  1:236339‑M1/1‑52 (MQ=255)
                                                                                            aTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgccatggtgccgctttttctgctg                                                    >  1:563395‑M1/1‑51 (MQ=255)
                                                                                                    gCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatac                                            <  1:79497‑M1/143‑101 (MQ=255)
                                                                                                     cACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcgatggtgccgccttttctgctgaagaataac                                           >  1:317408‑M1/1‑42 (MQ=255)
                                                                                                      tgtgattttttcattttcctagacgTGGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAATGGCTACATTAGGATGCAGCGGTCTCATAGCTATACCGGTTATGAGTGGTGGTATTGAGCAATCAGTAATCATTCAGTgggg                                          >  2:630563‑M1/26‑143 (MQ=255)
                                                                                                       cTGTGCTAACGGCTCCCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccg                                         <  1:91646‑M1/143‑104 (MQ=255)
                                                                                                         tatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTg                                       <  1:573092‑M1/121‑1 (MQ=255)
                                                                                                         tatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTg                                       >  2:145333‑M1/23‑143 (MQ=255)
                                                                                                           gCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGa                                     >  1:165584/1‑143 (MQ=255)
                                                                                                               ttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGGTTCATAGCTATACCGGTTATGATTGGTGGTGTTGAGCGATCAGTAATCATTCAGTGGGGGGGGAATGc                                 <  1:252968‑M1/127‑1 (MQ=255)
                                                                                                               ttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGGTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGc                                 <  1:530296‑M1/127‑1 (MQ=255)
                                                                                                                ttagtttcatagacgTTGCTGTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACTGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGcc                                >  2:503582‑M1/16‑143 (MQ=255)
                                                                                                                cGGCTCTCGAAAACGTTGGTTTGGGAGAAGGAGCAAGACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGcc                                <  2:456214/143‑1 (MQ=255)
                                                                                                                    tttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCaa                            <  1:592116‑M1/132‑1 (MQ=255)
                                                                                                                     ctcGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggc                           >  1:42291‑M1/1‑26 (MQ=255)
                                                                                                                        gAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggcacggccgaaggctta                        >  1:100481‑M1/1‑23 (MQ=255)
                                                                                                                        gAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGc                        >  2:235917/1‑143 (MQ=255)
                                                                                                                        gAAAACCTTGGTTTGGGAGAAGAAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGCTGAAGAGATATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATAATTCAGTGGGGGTGGAAGGCGGAGAAAGc                        >  2:155604/1‑143 (MQ=255)
                                                                                                                         taaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCACCGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATGGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCa                       <  2:101772‑M1/137‑1 (MQ=255)
                                                                                                                         aaaaCCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggcttat                       >  1:791986‑M1/1‑22 (MQ=255)
                                                                                                                          aaacgTTGGGTTGGGAGAAGGGGCAAGACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTGCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCAt                      >  1:202519‑M1/6‑143 (MQ=255)
                                                                                                                              gTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGTTGGAATGCCGCAAAAGCATCTGc                  <  1:392438‑M1/142‑1 (MQ=255)
                                                                                                                               TTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCACACGCATCTGcc                 <  1:105177‑M1/143‑1 (MQ=255)
                                                                                                                                   TTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTg             <  1:710495‑M1/143‑1 (MQ=255)
                                                                                                                                     TGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTggg           >  1:437724‑M1/1‑143 (MQ=255)
                                                                                                                                      gggAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggcttatccgacaaataaat          <  2:167467‑M1/143‑135 (MQ=255)
                                                                                                                                             AGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATg    >  1:565343‑M1/1‑143 (MQ=255)
                                                                                                                                               gctctgcattacctgttggtgtcccggttccgtggccttaagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggcttatccgacacataacttgcctgat  >  1:346953‑M1/1‑1 (MQ=255)
                                                                                                                                               |                                                                                                                                              
GGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGA  >  NC_000913/1207663‑1207947

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.