Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,316,679 A→G T169A (ACC→GCC)  rcsB → response regulator in two‑component regulatory system with RcsC and YojN

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,316,6790AG98.4% 171.4 / NA 61T169A (ACC→GCC) rcsBresponse regulator in two‑component regulatory system with RcsC and YojN
Reads supporting (aligned to +/- strand):  ref base A (1/0);  new base G (28/32);  total (29/32)
Fisher's exact test for biased strand distribution p-value = 4.75e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.95e-01

CAGAAAGGGAAGAAATTTACCCCGGAAAGCGTTTCTCGCCTGTTGGAAAAAATCAGTGCTGGTGGTTACGGTGACAAGCGTCTCTCGCCAAAAGAGAGTGAAGTTCTGCGCCTGTTTG‑CGGAAGGCTTCCTGGTGACCGAGATCGCTAAAAAGCTGAACCGCAGTATTAAAACCATCAGTAGCCAGAAGAAATCTGCGATGATGAAGCTGGGTGTCGAGAACGATATCGCCCTGCTGAATTATCTCTCTTCAGTGACCTTAAGTCCGGCAGAT  >  NC_000913/2316544‑2316816
                                                                                                                                        |                                                                                                                                         
ccgAAGGGGAAGAGATTTACCCCGGAAAGCGTTTCTCGCCTGTTGGAAAAAATCAGTGCTGGTGGTTACTGTGACATGCGTCTCTCGCCAAAAGGGAGTGAAGTTCTGCCAATGTTTG‑GTGATCGCTTCCTGGTGGCCGAGAt                                                                                                                                    <  2:488940/141‑1 (MQ=255)
  gagaGGGAAGAAATTTACCCCGGAAAGCGTTTCTCGCCTGTTGGAAAAAATCAGTGCTGGTGGTTACGGTGACAAGCGTCTCTCGCCAAAAGAGAGTGAAGTTCTGCGCCTGTTTG‑CGGAAGGCTTCCTGGTGGCCGAGATCg                                                                                                                                  <  2:540168/140‑1 (MQ=255)
  gAAAGGGAAGAAATTTACCCCGGAAAGCGTTTCTCGCCTGTTGGAAAAAATCAGTGCTGGTGGTTACGGTGACAAGCGTCTCTCGCCAAAAGAGAGTGAAGTTCTGCGCCTGTTTG‑CGGAAGGCTTCCTGGTGGCCGAGATCg                                                                                                                                  >  1:745776/1‑143 (MQ=255)
  gAAAGGGAAGAAATTTACCCCGGAAAGCGTTTCTCGCCTGTTGGAAAAAATCAGTGCTGGTGGTTACGGTGACAAGCGTCTCTCGCCAAAAGAGAGTGAAGTTCTGCGCCTGTTTG‑CGGAAGGCTTCCTGGTGGCCGAGATCg                                                                                                                                  <  1:301723/143‑1 (MQ=255)
         aagaaATTTACCCCGGAAAGCGTTTCTCGCCTGTTGGAAAAAATCAGTGCTGGTGGTTACGGTGACAAGCGTCTCTCGCCAAAAGAGAGTGAAGTTCTGCGCCTGTTTG‑CGGAAGGCTTCCTGGTGGCCGAGATCGCTaaaaa                                                                                                                           <  2:19844/143‑1 (MQ=255)
         aagaaAGTTACCCTGGAGAGCGGTTCTCGCCTGTTGGAAAAAATCAGTGCTGGTGGTTACGGTGACAAGCGTCTCTCGCCAAAAGAGAGTGAAGTTCTGCGCCTGTTTG‑CGGAAGGCTTCCTGGTGGCCGAGATCGCTaaaaa                                                                                                                           <  2:107830/143‑1 (MQ=255)
           gaaATTTACGTCGGATAGCGTTGTTCGCCTGTTGGAATAGTTCAGTGCTGGTGGTTTCGGTGACAAGCGTCTCTCTCCATAAGAGAGTGAAGTTCTGCGCCTGTTTG‑CGGAAGGCTTCCTGGTGGCCGAGATCGCTAAAAAGc                                                                                                                         <  2:277125/143‑1 (MQ=255)
                 tACCCCGGAAAGCGTTTCTCGCCTGTTGGAAAAAATCAGTGCTGGTGGTTACGGTGACAAGCGTCTCTCGCCAAAAGAGAGTGAAGTTCTGCGCCTGTTTG‑CGGAAGGCTTCCTGGTGGCCGAGATCGCTAAAAAGCTGAAcc                                                                                                                   >  1:514704/1‑143 (MQ=255)
                      cGGAAGGCGTTTCTCGGCGGTTGGAAAAAATCAGTGCTGGTGGTTACGGTGACAAGCGTCTCTCGCCAAAAGAGAGTGAAGTTCTGCGCCTGTTTG‑CGGAAGGCTTCCTGGTGGCCGAGATCGCTAAAAAGCTGAACCGCAGt                                                                                                              <  2:444497/143‑1 (MQ=255)
                      cGGAAAGCGTTTCTCGCCTGTTGGAAAAAATCAGTGCTGGTGGTTACGGTGACAAGCGTCTCTCGCCAAAAGAGAGTGAAGTTCTGCGCCTGTTTG‑CGGAAGGCTTCCTGGTGGCCGAGATCGCTGAAAGGCTGAAGCGCAGt                                                                                                              >  2:699636/1‑143 (MQ=255)
                        gAAAGCGTTTCTCGCCTGTTGGAAAAAATCAGTGCTGGTGGTTACGGTGACAAGCGTCTCTCGCCAAAAGAGAGTGAAGTTCTGCGCCTGTTTG‑CGGAAGGCTTCCTGGTGGCCGAGATCGCTAAAAAGCTGAACCGCAGTAt                                                                                                            <  1:426378/143‑1 (MQ=255)
                            gCGTTTCTCGCCTGTTGGAAAAAATCAGTGCTGGTGGTTACGGTGACAAGCGTCTCTCGCCAAAAGAGAGTGAAGTTCTGCGCCTGTTTG‑CGGAAGGCTTCCTGGTGGCCGAGATCGCTAAAAAGCTGAACCGCAGTATTaac                                                                                                        >  2:54731/1‑142 (MQ=255)
                            gCGTTTCTCGCCTGTTGGAAAAAATCAGTGCTGGTGGTTACGGTGACAAGCGGCACTCGCCAAAAGCGAGTGAAGTTCTGCGCCTGTATGACGGAA‑GCTTCCTGGTGGCCGAGATCGCCAACCAGCTGCACAGCAGCATTaca                                                                                                        >  2:525143/1‑141 (MQ=255)
                               tttCTCGCTTGTTGGAAAAAATCAGTGCTGGTGGTTACGGTGACAAGCGTCTCTCGCCAAAAGAGAGTGAAGTTCTGCGCCTGTTTG‑CGGAAGGCTTCCTGGTGGCCGAGATCGCTAAAAAGCTGAACCGCAGTATTAAAAcc                                                                                                     <  2:38228/143‑1 (MQ=255)
                                 tctcGCCTGTTGGAAAAAATCAGTGCTGGTGGTTACGGTGACAAGCGTCTCTCGCCAAAAGAGAGTGAAGTTCTGCGCCTGTTTG‑CGGAAGGCTTCCTGGTGGCCGAGATCGCTAAAAAGCTGAACCGCAGTATTAAAACCAt                                                                                                   >  1:576113/1‑143 (MQ=255)
                                   tcGCCTGTTGGAAAAAATCAGTGCTGGTGGTTACGGTGACAAGCGTCTCTCGCCAAAAGAGAGTGAAGTTCTGCGCCTGTTTG‑CGGAAGGCTTCCTGGTGGCCGAGATCGCTAAAGAGCTGAACCGCAGTATTAAAACCATCa                                                                                                 >  2:674227/1‑143 (MQ=255)
                                   tcGCCTGTTGGAAAAAATCAGTGCTGGTGGTTACGGTGACAAGCGTCTCTCGCCAAAAGAGAGTGAAGTTCTGCGCCTGTTTG‑CGGAAGGCTTCCTGGTGGCCGAGAGCGCTAAAAAGCTGAACCGCAGTATTAAGACCATCa                                                                                                 >  1:536397/1‑143 (MQ=255)
                                          ttGGAAAAAATCAGTGCTGGTGGTTACGGTGACAAGCGTCTCTCGCCAAAAGAGAGTGAAGTTCTGCGCCTGTTTG‑CGGAAGGCTTCCTGGTGGCCGAGATCGCTAAAAAGCTGAACCGCAGTATTAAAACCATCAGTAGCCa                                                                                          >  2:254305/1‑143 (MQ=255)
                                             gAAATAATCAGTGCTGGTGGTTACGGTGACAAGCGTCTCTCGCCAAAAGAGAGTGAAGTTCTGCGCCTGTTTG‑CGGAAGGCTTCCTGGTGGCCGAGATCGCTAAAAAGCTGAACCGCAGTATTAAAACCATCAGTAGCCagaa                                                                                       <  1:587530/143‑1 (MQ=255)
                                              aaaaaaTCAGTGCTGGTGGTTACGGTGACAAGCGTCTCTCGCCAAAAGAGAGTGAAGTTCTGCGCCTGTTTG‑CGGAAGGCTTCCTGGTGGCCGAGATCGCTAAAAAGCTGAACCGCAGTATTAAAACCATCAGTAGCCagaag                                                                                      >  2:523005/1‑143 (MQ=255)
                                              aaaaaaTCAGTGCTGGTGGTTACGGTGACAAGCGTCTCTCGCCAAAAGAGAGTGAAGTTCTGCGCCTGTTTG‑CGGAAGGCTTCCAGGAGACAGCGTTCGCTAAAAAGCTGAACCGCAGTATTAAAACCATCAGTAGCCagaag                                                                                      >  1:181928/1‑143 (MQ=255)
                                               aaaaaTCAGTGCTGGTGGTTACGGTGACAAGCGTCTCTCGCCAAAAGAGAGTGAAGTTCTGCGCCTGTTTG‑CGGAAGGCTTCCTGGTGGCCGAGATCGCTAAAAAGCTGAACCGCAGTATTACAACCATCTGTAGcccgccca                                                                                     >  1:169129/1‑137 (MQ=255)
                                                    tCAGTGCTGGTGGTTACGGTGACAAGCGTCTCTCGCCAAAAGAGAGTGAAGTTCGGCGCCGGTGTG‑CGGAAGGCTTCCTGGTGGCCGAGAGCGCTAAAAAGCTGAGCCGGCGACTTAGAACCATCAGTAGCCAGAAGACAtgt                                                                                >  2:614465/1‑141 (MQ=255)
                                                     tattGCTGGTGGTTACGGTTACAAGCGTCTCGCGCAATAAGAGAGTGAAGTTCTGCGCCTGTTTG‑CGGAAGGCGTCTTGGCGGCCGAGATCGCTAAAAAGCTGACCCGCAGTATTAAAACCATCAGTAGCCAGAAGAAATCTg                                                                               <  2:48342/140‑1 (MQ=255)
                                                        tGCTGGTGGTTACGGTGACAAGCGTCTCTCGCCAAAAGAGAGTGAAGTTCTGCGCCTGTTTG‑CGGAAGGCTTCCTGGTGGCCGAGATCGCTAAAAAGCTGAACCGCAGTATTAAAACCATCAGTAGCCAGAAGAAATCTGCga                                                                            >  2:673835/1‑143 (MQ=255)
                                                        ggcgcgtggtTACGGTGACTAGAGTCGCGCGCCGAAAGAGAGTGCAGTGCTGCGTCTGTTTG‑CGGAAGGCTTCCTGGTGGCCGAGATCGCTAAAAAGCTGAACCGCAGTATTAAAACCATCAGTAGCCAGAAGAAATCTGCga                                                                            <  2:61242/138‑1 (MQ=255)
                                                         gCTGGTGGTTACGGTGACAAGCGTCTCTCGCCAAAAGGGATTGAAGTTCTGCGCCTGTTTG‑CGGAAGGCTTCCTGGTGGCCGAGATCGCGAAAAAGCTGAACCGCAGTATTAAAACCATCAGTAGCCAGAAGAAATCTGCgat                                                                           <  2:30250/143‑1 (MQ=255)
                                                            ggtggtTACGGTGACAAGCGTCTCTCGCCAAAAGAGAGTGAAGTTCTGCGCCTGTTTG‑CGGAAGGCTTCCTGGTGGCCGAGATCGCTAAAAAGCTGAACCGCAGTATTAAAACCATCCGTAGCCAGAAGAACTCTGCgatgat                                                                        >  2:132763/1‑143 (MQ=255)
                                                            ggtggtTACGGTGACAAGCGTCTCTCGCCAAAAGAGAGTGAAGTTCTGCGCCTGTTTG‑CGGAAGGCTTCCTGGTGGCCGAGATCGCTAAAAAGCTGAACCGCAGTATTAAAACCATCAGTAGCCAGAAGAAATCTGCgctgat                                                                        >  1:658428/1‑143 (MQ=255)
                                                               ggtTACGGTGACAAGCGTCTCTCGCCAAAAGAGAGTGAAGTTCTGCGCCTGTTTG‑CGGAAGGCTTCCTGGTGGCCGAGATCGCTAAAAAGCTGAACCGCAGTATTAAAACCATCAGTAGCCAGAAGAAATCTGCGATGATGaa                                                                     <  1:673835/143‑1 (MQ=255)
                                                               gggtACGGTGGCAGTCGTCTCTCGCCAAGAGAGAGTGAAGTTCTGCGCCTGTTTG‑CGGAAGGCTTCCTGGTGGCCGAGATCGCTAAAAAGCTGAACCGCAGTATTAAAACCATCAGTAGCCAGAAGAAATCTGCGATGATGaa                                                                     <  2:745776/140‑1 (MQ=255)
                                                                 ttACGGTGACAAGCGTCTCTCGCCAAAAGAGAGTGAAGTTCTGCGCCTGTTTG‑CGGAAGGCTTCCTGGTGGCCGAGATCGCTAAAAAGCTGAACCGCAGGATTAAAACCATCAGTAGCCAGAAGAAATCTGCGATGATGAAGc                                                                   >  1:287592/1‑143 (MQ=255)
                                                                    gggTGACGAGCGGCTCTCGCCACAAGAGAGTGAGGTTCTGCGCCTGTTTG‑CGGAAGGCTTCCTGGTGGCCGAGATCGCTAAAAAGCTGAACCGCAGTATTAAAACCATCAGTAGCCAGAAGAAATCTGCGATGATGAAGCTgg                                                                <  2:479073/142‑1 (MQ=255)
                                                                         aCAAGCGTCTCTCGCCAAAAGAGAGTGAAGTTCTGCGCCTGTTTG‑CGGAAGGCTTCCTGGTGGCCGAGATCGCTAAAAAGCTGAACCGCAGTATTAAAACCATCAGTAGCCAGAAGACATCTGCGATGATGCAGCTGGGTGTc                                                           >  1:249432/1‑143 (MQ=255)
                                                                         aCAAGCGTCTCTCGCCAAAAGAGAGTGAAGTTCTGCGCCTGTTTG‑CGGAAGGCTTCCTGGTGGCCGAGATCGCTAAAAAGCTGAACCGCAGTATTAAAACCATCAGTAGCCAGAAGAAATCTGCGATGATGAAGCTGGGTGTc                                                           >  2:341327/1‑143 (MQ=255)
                                                                          cAAGCGTCTCTCGCCAAAAGAGAGTGAAGTTCTGCGCCTGTTTG‑CGGAAGGCTTCCTGGTGGCCGAGATCGCTAAAAAGCTGAACCGCAGTATTAAAACCATCAGTAGCCAGAAGAAATCTGCGATGATGAAGCTGGGTGTCg                                                          <  2:576113/143‑1 (MQ=255)
                                                                          cAAGCGTCTCTCGCCAAAAGAGAGTGAAGTTCTGCGCCTGTTTG‑CGGAAGGCTTCCTGGTGGCCGAGATCGCTAAAAAGCTGAACCGCAGTATTAAAACCATCAGTAGCCAGAAGAAATCTCCGATGATGGAGCTGGGTGTCg                                                          >  1:327348/1‑143 (MQ=255)
                                                                           aaGCGTCTCTCGCCAAAAGAGAGTGAAGTTCTGCGCCTGTTTG‑CGGAAGGCTTCCTGGTGGCCGAGATCGCTGAAAAGCTGAACCGCAGTATTAAAACCATCAGTAGCCAGAAGAAATCTGCGATGATGAAGCTGGGCGTCga                                                         >  2:459626/1‑143 (MQ=255)
                                                                           aaGCGTCTCTCGCCAAAAGAAAGTGAAGTTCTGCGCCTGTTTG‑CGGAAGGCTTCCTGGTGGCCGAGATCGCTAAAAAGCTGAACCGCAGTATTAAAACCATCAGTAGCCAGAAGAAATCTGCGATGAAGAAGCTGGGGGTCga                                                         >  2:399479/1‑143 (MQ=255)
                                                                             gCGTCTCTCGCCAAAAGAGAGTGAAGTTCTGCGCCTGTTTG‑CGGAAGGCTTCCTGGTGGCCGAGATCGCTAAAAAGCTGAACCGCAGTATTAAAACCATCAGTAGCCAGAAGAAATCTGCGATGATGAAGCTGGGTGTCgcga                                                       >  1:373820/1‑143 (MQ=255)
                                                                              cGTCTCTCGCCAAAAGAGAGTGAAGTTCTGCGCCTGTTTG‑CGGAAGGCTTCCTGGTGGCCGAGATCGCTAAAAAGCTGAACCGCAGTATTAAAACCATCAGTAGCCAGAAGAAATCTGCGATGAGGAAGACGGGTGTCGAGaa                                                      >  2:245906/1‑143 (MQ=255)
                                                                                           aaGAGAGTGAAGTTCTGCGCCGGTTGG‑CGGAAGGCTTCCTGGTGGCCGAGATCGCTAAAAAGCTGAACCGCAGTATTAAAACCATCAGTAGCCAGAAGAAATCTGCGATGATGAAGCTGGGTGTCGAGAACGATATCGCCctg                                         <  1:648285/143‑1 (MQ=255)
                                                                                             gagggggAAGTGCGGCGCCGGTTTG‑CGAGAGGCTTCTTGGTGGCCGAGATCGCTAAAAAGCTGAACCGCAGTATTAAAACCGTCAGTAGCCAGAAGAAACCTGCGGTGATGAAGCTGGGTGTCGAGAACGATATCGCCctgct                                       <  2:173460/137‑1 (MQ=255)
                                                                                                agTGAGGTTCGGCGCCTGTCTG‑CGGAAGGCTTGATGGTGGGCGAGATCGCTAAAAAGCGGAACCGTAGTATTAAAACCATCAGTAGCCAGAAGAAATCTGCGATGATGAAGCTGGGTGTCGAGAACGATATCGCCCTGCTGaa                                    <  2:98477/143‑1 (MQ=255)
                                                                                                 gTGAAGTTCTGCGCCTGTTTG‑CGGAAGGCTTCCTGGTGGCCGAGATCGCTAAAAAGCTGAACCGCAGTATTAAAACCATCAGTAGCCAGAAGAAATCTGCGATGATGAAGCTGGGTGTCGAGAACGATATCGCCCTGCTGAAt                                   <  1:19543/143‑1 (MQ=255)
                                                                                                  tggacttCTGCGCCTGTGTG‑CGGAAGGCTTCCTGGTGGCCGAGATCGCTAAAAAGCTGAACCGCAGTATTAAAACCATCAGTAGCCAGAAGAAATCTGCGATGATGAAGCTGGGTGTCGAGAACGATATCGCCCTGCTGAAtt                                  <  2:509618/138‑1 (MQ=255)
                                                                                                      gTTCTGCTCCTGTGTG‑CGGAAGGCTTCCTGGTGGCCGAGATCGCTAAAAAGCTGAACCGCAGTATTAAAACCATCAGTAGCCAGAAGAAATCTGCGATGATGAAGCTGTGTGTCTAGAACGATATCGCCCTGCTGAATTAtct                              <  2:638044/143‑1 (MQ=255)
                                                                                                       ttCTGCGCCTGTTTG‑CGGAAGGCTTCCTGGTGGCCGAGATCGCTAAAAAGCTGAACCGCAGTATTAAAACCATCAGTAGCCAGAAGAAATCTGCGATGATGAAGCTGGGTGTCGAGCACGATATCGCCCTGCTGTATTAtctc                             >  1:139216/1‑143 (MQ=255)
                                                                                                          tGCGCCTGTCTG‑CGGAAGGCTGCCTGGTGGCCGAGATCGCTAAAAAGCTGAACCGCAGTATTAAAACCATCAGTAGCCAGAAGAAATCTGCGATGATGAAGCTGGGTGTCGAGAACGATATCGCCCTGCTGAATTATctctct                          <  2:464807/143‑1 (MQ=255)
                                                                                                          ggcgtCTGTTTG‑CGGGAGGCTTCCTGGTGGCCGAGATCGCTAAACAGCTGATCCGCAGTATTAAAGCCATCGGTAGCCAGGAGAAATCTTCGATGATGAAGCTGGGTGTCGAGAACGATATCGCCCTGCTGAATTATctctct                          <  2:646526/142‑1 (MQ=255)
                                                                                                           gcgcCTGTTTG‑CGGAAGGCTTCCTGGTGGCCGAGATCGCTAAAAAGCTGAACCGCAGTATTAAAACCATCAGTAGCCAGAAGAAATCTGCGATGATGAAGCTGGGTGTCGAGAACGATATCGCCCTGCTGAATTATCTCTCtt                         >  2:548048/1‑143 (MQ=255)
                                                                                                              ccTGTTTG‑CGGAAGGCTTCCTGGTGGCCGAGATCGCTAAAAAGCTGAACCGCAGTATTAACACCATCAGTAGCCAGAAGAAATCTGCGATGATGAAGCTGGGTGTCGAGAACGATATCGCCCTGCTGAAGTCTCTCTCTTccg                      >  2:359179/1‑141 (MQ=255)
                                                                                                               cTGTTTC‑CGGAAGGCCTCCTGGTGGCCGAGAGCGCAACAAAGCGGATCCGCAGTATTAACACCATCAGTAGCCAGAATAAATCTGCGATGATGAAGCTGGGTGTCGAGAACGATATCGCCCTGCTGAATTATCTCTCTTCAGt                     <  1:295875/143‑1 (MQ=255)
                                                                                                                     g‑CGGACGGCGTCCTGGTTGCCTGGATCGCTAAAAAGCTGAACCGCAGTATTAAAGCCGTCAGTAGCCAGAAGAAATCTGCGATGATGAAGCTGGGTGTCGAGAACGATATCGCCCTGCTGAATTATCCCTCTTCAGTGACCtt               <  2:680308/143‑1 (MQ=255)
                                                                                                                     g‑CGGAAGGCTTCCTGGTGGCCGAGATCGCTAAAAAGCTGAACCGCAGTATTAAAACCATCAGTAGCCAGAAGAAATCTGCGATGATGAAGCTGGGTGTCGAGAACGATATCGCCCTGCTGAATTATCTCTCTTCAGTGACCtt               <  1:523005/143‑1 (MQ=255)
                                                                                                                        ggAAGGCTTCCTGGTGGCCGAGATCGCTAAAAAGCTGAACCACAGTATTAAAACCATCAGTAGCAAGAAGAAATCTGCGATGATGAAGCTGGGTGTAGAGAAAGATATAGCCATGCGGAATTATCTGTCTTCAGTGCACTTaa             >  2:771742/1‑143 (MQ=255)
                                                                                                                        ggAAGGCGTTCTGGGGGCCGAGATCGCTAGAAATCTGAACCGCAGTATTAGAGCCATCAGTAGCCAGAAGAAATGTGCGATGATGAAGCTGGGTGTCGAGAACGATATCGCCCTGCTGAATTATCTCTCTTCAGTGACCTTaa             <  1:169507/143‑1 (MQ=255)
                                                                                                                             gCTTCCTGGTGGCCGAGATCGCTAAAAAGCTGAACCGAAGTCTTAGAACTATCAGTAGCCAGAAGAAATCTGCGATGATGAAGATGGGTGACGAGAACGATATCGACCTGCTGACTTATCTCCCCTCCGTGACCTTAAgcgcg        >  2:56461/1‑139 (MQ=255)
                                                                                                                              cTTCCTGGTGGCCGAGATCGCTAAAAAGCTGAACCGCAGTATTAAAACCATCAGTAGCCAGAAGAAATCTGCGATGATGAAGCTGGGTGTCGAGAACGATATCGCCCTGCTGAATTATCTCTCTTCAGTGACCTTAAGTCCgg       <  1:443437/143‑1 (MQ=255)
                                                                                                                                tCCTGGTGGCCGAGATCGCTAAAAAGCTGAACCGCAGTATTAAAACCATCAGTAGCCAGAAGAAATCTGCGATGATGAAGCTGGGTGTCGAGAACGATATCGCCCTGCTGAATTATCTCTCTTCAGTGACCTTAAGTCCGGCa     <  1:341327/143‑1 (MQ=255)
                                                                                                                                  cTGGTGGCCGAGATCGATAAAAAGCAGAACCGCAGTATCAAAACCATCAGTAGCCAGCAGAAATCTGCGATGATGAAGCTGGGTGTCGAGAACGATATCGCCCTGCTGAATTATCTCTCTTCAGTGACCTTAAGTCCGGCAGa   <  1:305526/143‑1 (MQ=255)
                                                                                                                                   tggtggCCGAGATCGCTAAAAAGCTGAACCGCAGTATTAAAACCATCAGTAGCCAGAAGAAATCTGCGATGATGAAGCTGGGTGTCGAGAACGATATCGCCCTGCTGAATTATCTCTCTTCAGTGACCTTCAGTCCGGCAGAt  >  1:526251/1‑143 (MQ=255)
                                                                                                                                        |                                                                                                                                         
CAGAAAGGGAAGAAATTTACCCCGGAAAGCGTTTCTCGCCTGTTGGAAAAAATCAGTGCTGGTGGTTACGGTGACAAGCGTCTCTCGCCAAAAGAGAGTGAAGTTCTGCGCCTGTTTG‑CGGAAGGCTTCCTGGTGACCGAGATCGCTAAAAAGCTGAACCGCAGTATTAAAACCATCAGTAGCCAGAAGAAATCTGCGATGATGAAGCTGGGTGTCGAGAACGATATCGCCCTGCTGAATTATCTCTCTTCAGTGACCTTAAGTCCGGCAGAT  >  NC_000913/2316544‑2316816

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑