BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3892357 =	117 (1.930)	5 (0.090)	5/270	7.8	4.4%	coding (744/1176 nt)	mdtL	multidrug efflux system protein
*	?	NC_000913	3892391 =	106 (1.830)	5 (0.090)	5/270	7.8	4.4%	coding (778/1176 nt)	mdtL	multidrug efflux system protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 114 total aligned reads displayed.

TCAGCGTTTCGGTGATCCTCACTTTCGTCAACACGTCACCGGTATTGCTGATGGAAATCATGGGGTTTGAGCGCGGTGAATACGCCACCATTATGGCGCTGACCGCTGGCGTCAGCATGACCGTTTCATTCTCCACGCCATTTGCGCTGGGAATTTTTAAGCCACGTACGTTGATGATCACCTCGCAGGTGTTATTCCTGGCGGCGGGGATCACTCTTGCCGTTTCACCTTCCCATGCGGTTTCTCTGTTTGGTATCACGCTGATTTGCGCCGGTTTCTCGG  >  NC_000913/3892251‑3892532

tCAGCGTTTCGGTGATCCTCACTTTCGTCGACGCGCCACCAGTATTGCTGATGGAAATCATGGGGTTTGAGCGCGGTGAATACGCCACCATTATGGCGCTGACCGCTGGCGTCAGCATGACCGTTTCATTCTCCACGCCAttt                                                                                                                                             <  2:195408/143‑1 (MQ=255)

tCAGCGTTTCGGTGATCCTCACTTTCGTCAACACGTCACCGGTATTGCTGATGGAAATCATGGGGTTTGCGCGCGGTGAATACGCCACCATTATGGCGGTGACCGCTGGCGGCAGCATGACCGTGTCATTCGCCACGCCAttg                                                                                                                                             >  1:737646/1‑142 (MQ=255)

 cAGTGTTTCGGTGATCCTCACTTTCGTCAACACGTCACCGGTAGTGCTGATGGAAATCATGGGGTTTGAGCGCGGTGAATACGCCACCATTATGGCGCTGACCGCTGGCGTCAGCATGACCGTTTCATTCTCCACGCCATTTg                                                                                                                                            <  2:233348/143‑1 (MQ=255)

  aGCGTTTCGGTGATCCTCACTTTCGTCAACACGTCACCGGTATTGCTGATGGAAATCATGGGGTTTGAGCGCGGTGAATACGCCACCATTATGGCGCTGACCGCTGGCGTCAGCATGACCGTTTCATTCTCCACGCCATTTgc                                                                                                                                           <  2:827298/143‑1 (MQ=255)

     gTTTCGGTGATCCTCACTTTCGTCAACACGTCACCGGTATTGCTGATGGAAATCATGGGGTTTGAGCGCGGTGAATACGCCACCATTATGGCGCTGACCGCTGGCGTCAGCATGACCGTTTCATTCTCCACGCCATTTGCGCt                                                                                                                                        <  2:129116/143‑1 (MQ=255)

      tttCGGTGATCCTCACTTTCGTCAACACGTCACCGGTATTGCTGATGGAAATCATGGGGTTTGAGCGCGGTGAATACGCCACCATTATGGCGCTGACCGCTGGCGTCAGCATGACCGTTTCATTCTCCACGCCATTTGCGCTg                                                                                                                                       >  1:28400/1‑143 (MQ=255)

      tttCGGTGATCCTCACTTTCGTCAACACGACACCGGTATTGCTGATGGAAATCAGGGGGTTTGAGCGCGGTGAATACGCCACCAGTATGGCGCTGACCGCTGGCGTCAGCATGACCGTTTCATACTCCACGCCCTTTgcgccg                                                                                                                                       >  2:473/1‑141 (MQ=255)

      ttgcGGTGATCCTCACGTTCGTCAACACGTCACCGGTATTGCTGATGGAAAGCATGGGGTTTGAGCGCGGTGAATACGCCACCATTATGGCGCTGACCGCTGGCGTCAGCATGACCGTTTCATTCTCCACGCCATTTGCGCTg                                                                                                                                       <  1:120976/140‑1 (MQ=255)

       ttCGGTGGTCCGCGCTGTCGTCAACAGGACGCCGGTCTTGCTGATGGGAATCATGGGGTTTGAGCGCGGTGAATACGCCGCCATTATGGCGCTGGCCGCTGGCGGCAGCATGACCGTTTCATTCTCCACGCCATTTGCGCTgg                                                                                                                                      <  1:22782/143‑1 (MQ=255)

       ttCGGTGATCCTCACTTCCGTCAACACGTCACCGGTATTGCTGATGGAAATCATGGGGTTTGAGCGCGGTGAATACGCCACCATTATGGCGCTGACCGCTGGCGTCAGCATGACCGTTTCATTCTCCACGCCATTTGCGCTgg                                                                                                                                      <  1:162334/143‑1 (MQ=255)

          ggTGATCCTCACTTTCGTCAACACGTCACCGGTATTGCTGATGGAAATCATGGGGTTTGAGCGCGGTGAATACGCCACCATTATGGCGCTGACCGCTGGCGTCAGCATGACCGTTTCATTCTCCACGGCATATGCGCTgggca                                                                                                                                   >  1:8643/1‑141 (MQ=255)

           ttGAGCCTCACTTTCGTCAACACGTCACCGGTATTGCTGATGGAAATCATGGGGTTTGAGCGCGGTGAATACGCCACCATTATGGCGCTGACCGCTGGCGTCAGCATGACCGTTTCATTCTCCACGCCATTTGCGCTGGGAAt                                                                                                                                  <  1:300578/142‑1 (MQ=255)

           gTGATCCTCACTTTCGTCAACACGTCACCGGTATTGCTGATGGAAATCATGGGGTTTGAGCGCGGTGAATACGCCACCATTATGGCGCTGACCGCTGGCGTCAGCATGACCGTTTCATGCTCCACGCCATTTGCCCTGGGCAt                                                                                                                                  >  2:627888/1‑143 (MQ=255)

            tggtCCTCACTTTCGGCGACGCGTCCCCGGTAGTGCTGATGGAAAGCAGGGGGTTTGAGCGCGGTGAATACGCCACCATTATGGCGCTGACCGCTGGCGTCAGCATGACCGTTTCATTCTCCACGCCATTTGCGCTGGGAAtt                                                                                                                                 <  1:517625/140‑1 (MQ=255)

            gcgtCCTCACTTTCGTCGACACGTCACCGGTATTGCGGATGGAAATCATGGGGTTTGAGCGCGGTGAAGACGCCACCATTATGGCGCCGACCGCTGGCGTCAGCATGACCGTTTCATTCTCCACGCCATTTGCGCTGGGAAtt                                                                                                                                 <  1:607044/140‑1 (MQ=255)

             gATCCTCACTTTCGTCAACACGTCACCGGTATTGCTGATGGAAATCATGGGGTTTGAGCGCGGTGAATACGCCACCATTATGGCGCTGACCGCTGGCGTCAGCATGACCGTCTCATTCTCCACGCCATTTGCGCTGGGAAttt                                                                                                                                >  1:53486/1‑143 (MQ=255)

             gATCCTCACTGGCGGCAAGACGTGAGCGGTATTGCTGATGGAAGTCATGGGGTTTGCGCGCGGTGAATACGCCACCATTATGGCGCTGACCGCTGGCGTCAGCATGACCGTTTCATTCTCCACGCCATTTGCGCTGGGAAttt                                                                                                                                <  1:983797/143‑1 (MQ=255)

               tCCTCACTTTCGTCAACACGTCACCGGTATTGCTGATGGAAATCATGGGGTTTGAGCGCGGTGAATACGCCACCATTATGGCGCTTACGGCTGGCGCCGGCATGACCGTTTCATTCTCAACGCCATTTGGGCTGGGACttttt                                                                                                                              >  1:186946/1‑143 (MQ=255)

                ccTCACTTTCGTCAACACGTCACCGGTATTGCTGATGGAAATCATGGGGTTTGAGCGCGGTGAATACGCCACCATTATGGCGCTGACCGCTGGCGTCAGCATGACCGTTTCATTCTCCACGCCATTTGCGCTGGGAATTTTTa                                                                                                                             >  2:302155/1‑143 (MQ=255)

                ccTCACTTTCGTCAACACGTCACCGGTACTGCTGATGGAAATCATGGGGTTTGAGCGCGGTGAACACGCCACCATGAGGGCGCGGACCGCTGGCGTCAGCATGACCGTCTCATTCTCCACGCCATTTGCGCTGGGAATTTTTa                                                                                                                             <  2:521215/143‑1 (MQ=255)

                 cTCACTTTCGTCAACCCGTCACCGGTATTGCTGATGGAAATCATGGGGTGTGAGCGCGGTGAATACGCCACCATTATGGCGCTGACCGCTGGCGTCAGCATGACCGTTTCATTCTCCACGCCATTTGCGCTGGGAATTTTTaa                                                                                                                            <  1:47042/143‑1 (MQ=255)

                 cTCACTTTCGTCAACACGTCACCGGTATTGCTGATGGAAATCATGGGGTTTGAGCGCGGTGAATACGCCACCATTATGGCGCTGACCGCTGGCGTCAGCATGACCGTTTCATTCTCCACGCCATTTGCGCTGGGAATTTTTaa                                                                                                                            <  2:808875/143‑1 (MQ=255)

                  tCACTTTCGTCAACACGGCACCGGTATTGCTGATGGAAATCATGGGGTTTGAGCGCGGTGAATACGCCACCATTATGGCGCTGACCGCTGGCGTCAGCATGACCGTTTCATTCTCCACGCCATTTGCGCTGGGAATTTTTAAg                                                                                                                           <  1:165845/143‑1 (MQ=255)

                   cACTTTCGTCAACACGTCACCGGTATTGCTGATGGAAATCATGGGGTTTGAGCGCGGTGAATACGCCACCATTATGGCGCTGACCGCTGGCGTCACCATGACCGTTTCATTCTCCACGCCATGTGCGCTGGGAACTTTTACGc                                                                                                                          >  1:84867/1‑143 (MQ=255)

                     cTTTCGTCAACACGTCACCGGTATTGCTGATGGAAATAATGCGATTCCAGCATGGGGAATACGCCACCATTATGGCGCTGACCGCTGGCGTCAGCATGACAGTTTCATTATCCACGCCGTTTGAGCTGGGAATCTTTAAGcac                                                                                                                        >  1:228506/1‑141 (MQ=255)

                         cGTCAGCACGGGCCCGGTATTGCTGATGGAAATCATGGGGTTTGAGCGCGGTGACTACGCCACCATTATGGCGCTGACCGCTGGCGTCAGCATGACCGTTTCATTCTCCACGCCATTTGCGCTGGGAATTTTTAAGCCacgta                                                                                                                    <  1:623879/143‑1 (MQ=255)

                          gTCAACACGTCACCGGTATTGCTGATGGGAATCATGGGGTTTGAGCGCGGTGAATACGCCACCATTATGGCGCTGACCGCTGGCGTCAGCATGACCGTTTCATTCGCCACGCCAATTGCGCTGGGACTGTGTAAGCCaccaac                                                                                                                   >  2:937285/1‑139 (MQ=255)

                             aaCACGTCACCGGTATTGCTGATGGAAATCATGGGGTTTGAGCGCGGTGAATACGCCACCATTATGGCGCTGACCGCTGGCGTCAGCATGACCGTTTCATTCTCCACGCCATTTGCGCTGGGAATTTTTAAGCCACGTACGtt                                                                                                                <  2:258875/143‑1 (MQ=255)

                             aaCACGTCACCGGTATTGCTGATGGAAATCATGGGGTTTGAGCGCGGTGAATACGCCACCATTATGGCGCTGACCGCTGGCGTCAGCATGACCGTTTCATTCTCCACGCCATTTGCGCTGGGAATTTTTAAGCCACGTACGtt                                                                                                                <  2:386963/143‑1 (MQ=255)

                               cagtttggctgTATTGGTGTTGTAATTCATGGGGTTTGGGCGTGGTGAATACGCCACCATTATGGCGCTGACCGCTGGCTTCATCATGATCGTTTCTTTCTCCACGCCATTTGCGCTGGGAATTTTTAAGCCACGTACGTtga                                                                                                              <  1:31604/133‑1 (MQ=255)

                                acGTCTCCGGTATTGCTGATGGAAATCATGGGGTTTGAGCGCGGTGAATACGCCACCATTATGGCGCTGACCGCTGGCGTCAGCATGACCTTTTCATTCTCCACGCCATTTGCGCTGGGAATTTTTAAGCCACGTACGTtgat                                                                                                             <  1:995303/143‑1 (MQ=255)

                                  gTCACCGGTATTGCTGATGGAAATCATGGGGTTTGAGCGCGGTGAATACGCCAGCATTATGGCGCTGACCGCTGGCGTCAGCATGACCGTTTCATTCTGCACGCCCTTTGCGCTGGGAATTTTTAAGACACGTACGTtgctga                                                                                                           >  1:352494/1‑143 (MQ=255)

                                   tCACCGGGATTGCTGATGGAAATCATGGGGTTTGAGCGCGGTGAATACGCCACCATTATGGCGCTGACCGCTGGCGTCAGCATGCCCGTTTCATTCTCCACGCCATTTGCGCTGGGAATTTTTAAGCCACGTACGTTgatgat                                                                                                          <  2:415712/143‑1 (MQ=255)

                                         gTAGTGCTGATGGAAATCATGGGGTTTGAGCGCGGTGCATACGCCACCATTATGGCGCTGACCGCTGGCGTCAGCCTGACCGTTTCATTCTCCACGCCATTTGCGCTGGGAATTTTTAAGCCACGTACGTTGATGATCACCTc                                                                                                    <  1:498528/143‑1 (MQ=255)

                                             tGCTGATGGAAATCATGGGGTTTGAGCGCGGTGAATACGCCACCATTATGGCGCTGACCGCTGGCGTCAGCATGACCGTTTCATTCTCCACGCCATTTGCGCTGGGAATTTTTAAGCCACGTACGTTGATGATCACCTCGCAg                                                                                                <  2:551887/143‑1 (MQ=255)

                                               ctgagcgAAAGCATGGGGTTTGAGCGCGGTGAATACGCCACCATTATGGCGCTGACCGCTGGCGTCAGCATGACCGTTTCATTCTCCACGCCATTTGCGCTGGGAATTTTTAAGCCACGTACGTTGATGATCACCTCGCAGgt                                                                                              <  1:363061/137‑1 (MQ=255)

                                               cTGATGGAAATCATGGGGTTTGAGCGCGGTGAATACGCCACCATTATGGCGCTGACCGCTGGCGTCAGCATGACCGTTTCATTCTCCACGCCATTTGCGCTGGGAGTTTTTAAGCCACGTACGTTGATGATCACCTCGCAGgt                                                                                              >  2:885615/1‑143 (MQ=255)

                                               cTGATGGAAATCATGGGGTTTGAGCGCGGTGAATACGCCACCATTATGGCGCTGACCGCTGGCGTCAGCATGACCGTTTCATTCTCCACGCCATTTGCGCTGGGAATTGTTAAGCCACGTACGTTGGTGATCACCTCGCAGgt                                                                                              >  1:357611/1‑143 (MQ=255)

                                                      aactCATGGGCGTCGAGCGCGGTGAACACTCCACCATTATGGCGCTGACCGCTGGCGTCAGCATGACCGTCTCATTCTCCACGCCATTTGCGCTGGGAATTTTTAAGCCACGTACGTTGATGATCACCTCGCAGGTGTTATTc                                                                                       <  1:613229/140‑1 (MQ=255)

                                                       aaTCATGGGGTTTGAGCGCGGTGAATACGCCACCATTATGGCGCTGACCGCTGGCGTCAGCATGACCGTTTCATTCTCCACGCCATTTGCGCTGGGAATTTTTAAGCCACGTACGTTGATGATCACCTCGCAGGTGTTATTcc                                                                                      >  1:966022/1‑143 (MQ=255)

                                                        aTCATGGGGTTTGAGCGCGGCGAATACGTCTCCATTATCGCGCTGACCGCTGGCGTCAGCATGACCGTTTCATTCTCCACGCCATTTGCGCTGGGAATTTTTAAGCCACGTACGTTGATGATCACCTCGCAGGTGTTATTCCt                                                                                     <  2:194960/143‑1 (MQ=255)

                                                        aTCATGGGGTTGGAGCGCGGTGAAGACGCCACCATTATGGCGCTGACCGCTGGCGTCAGCATGACCGTTTCATTCTCCGCGCCATTTGCGCTGGGAATTTTTAAGCCACGTACGTTGATGATCACCTCGCAGGTGTTATTCCt                                                                                     <  1:379206/143‑1 (MQ=255)

                                                          cATGGGGTTTGAGCGCGGTGAATACGCCACCATTATGGCGCTGACCGCTGGCGTCAGCATGACCGTTTCATTCTCCACGCCATTTGCGCTGGGAATTTTTAAGCCACGTACGTTGATGATCACCTCGCAGGTGTTATTCCTgg                                                                                   <  2:747238/143‑1 (MQ=255)

                                                           aTGGGGTTTGAGCGCGGTGAATACGCCACCATTATGGCGCTGACCGCTGGCGTCAGCATGACCGTTTCATTCTCCACGCCATTTGCGCTGGGAATTTTTAAGCCACGTACGTTGATGATCACCTCGCAGGTGTTATTCCTggc                                                                                  >  2:811105/1‑143 (MQ=255)

                                                            tGGGGTTTGAGCGCGGTGAATACGCCACCATTATGGCGCTGACCGCTGGCGTCAGCATGACCGTTTCATTCTCCACGCCATTTGCGCTGGGAATTTTTAAGCCACGTACGTTGATGATCACCTCGCAGGTGTTATTCCTggcg                                                                                 >  2:998242/1‑143 (MQ=255)

                                                              gggTTTGAGCGCGGTGAATACGCCACCATTATGGCGCTGACCGCTGGCGTCAGCATGACCGTTTCATTCTCCACGCCATTTGCGCTGGGAATTTTTAAGCCACGTACGTTGATGATCACCTCGCAGGTGTTATTCCTggcggc                                                                               >  2:142324/1‑143 (MQ=255)

                                                               ggTTTGAGCGCGGTGAATACGCCACCATTATGGCGCTGACCGCTGGCGTCAGCATGACCGTTTCATTCTCCACGCCATTTGCGCTGGGAATTTTTAAGCCACGTACGTTGATGATCACCTCGCAGGTGTTATTCCTGgcggcg                                                                              >  1:691831/1‑143 (MQ=255)

                                                               ggTTTGAGCGCGGTGAATACGCCACCATTATGGCGCTGACCGCTGGCGTCAGCATGACCGTTTCATTCTCCACGCCATTTGCGCTGGGAATTTTTAAGCCACGTACGTTGATGATCACCTCGCAGGTGTTATTCCTGgcggcg                                                                              >  2:66539/1‑143 (MQ=255)

                                                                gTTTGAGCGCGGTGAATACGCCACCATTATGGCGCTGACCGCTGGCGTCAGCATGACCGTTTCATTCTCCACGCCATTTGCGCTGGGAATTTTTAAGCCACGTACGTTGATGATCACCTCGCAGGTGTTATTCCTGGcggcgg                                                                             >  2:47428/1‑143 (MQ=255)

                                                                gTTTGAGCGCGGTGAATACGCCACCATTATGGCGCTGACCGCTGGCGTCAGCATGACCGTTTCATTCTCCACGCCATTTGCGCTGGGAATTTTTAAGCCACGTACGTTGATGATCACCTCGCAGGTGTTATTCCTGGcggcgg                                                                             <  2:893870/143‑1 (MQ=255)

                                                                gTTTGAGCGCGGTGAATACGCCACCATTATGGAGCTGACCGCTGGCGGCAGCATGACCGTTTCATTCTCTACGCCATTTGCGCGGGGAATGGTTAAGGCACGTACGTTGATGCTCACCCCGCAGGAGTTATTcaaggccgcag                                                                             >  1:306197/1‑133 (MQ=255)

                                                                  ttGAGCGCGGTGAATACGCCACCATTATGGCGCTGACCGCTGGCGTCAGCATGACCGTTTCATTCTCCACGCCATTTGCGCTGGGAATTTTTAAGCCACGTACGTTGATGATCACCTCGCAGGTGTTATTCCTGGCGGCgggg                                                                           <  2:156620/143‑1 (MQ=255)

                                                                   tGAGCGCGGTGAATACGCCACCATTATGGCGCTGACCGCTGGCGTCAGCATGACCGTTTCATTCTCCACGCCATTTGCGCTGGGAATTTTTAAGCCACGTACGTTGATGATCACCTCGCAGGTGTTATTCCTGGCGGCGGGGa                                                                          >  2:589212/1‑143 (MQ=255)

                                                                    gAGCGCGGTGAATACGCCACCATTATGGCGCTGACCGCTGGCGTCAGCATGACCGTTTCATTCTCCACGCCCTTTGCGCTGGGAATTTTTAAGCCACGTACGTTGATGATCACCTCGCAGGTGTTATTCCTGGCGGCGGGGAt                                                                         >  1:956692/1‑143 (MQ=255)

                                                                    gAGCGCGGTGAATACGCCACCATTATGGCGCTGACCGCTGGCGTCAGCATGACCGTTTCATTCTCCACGCCATTTGCGCTGGGAATTTTTAAGCCACGTACGTTGATGATCACCTCGCAGGTGTTATTCCTGGCGGCGGGGAt                                                                         >  2:811848/1‑143 (MQ=255)

                                                                         cgcggAATGCGCCGACATTAGGGCGCTGACCGCTGGCGTCGGCATGACCGGCTCATCTTCCACGCCGGTTTCGCTGGTAATTTTTAAGCCGCGGACGTGGATGCGCACCTCGCAGGTGTTATTCCTGGCGGCGGGGATCCctc                                                                    <  1:657113/139‑1 (MQ=255)

                                                                         cgGTGAATACGCCACCATTATGGCGCTGACCGCTGGCGTCAGCATGACCGTTTCATTCTCCACGCCATTTGCGCTGGGAATTTTTAAGCCACGTACGTTGATGATCACCTCGCAGGTGTTATTCCTGGCGGCGGGGATCActc                                                                    <  2:934194/143‑1 (MQ=255)

                                                                          tgggAATACGCCACCACTATGGCGCTGACCGCTGGCGTCAGCATGACCGTTTCATTCTCCACGCCATTGGCGCTGGGAATTTTTAAGCCACGTACGTTGATGATCACCTCGCAGGTGTTATTCCTGGCGGCGGGGATCActct                                                                   <  2:55125/140‑1 (MQ=255)

                                                                          ggTGAATACGCCACCATTATGGCGCTGACCGCTGCCGTCAGCATGACCGTTTCATTCTCCACGCCATTTGCGCTGGGAATTTTTAAGCCACGTACGTTGATGATCACCTCGCAGGTGTTATTCCTGGCGGCGGGGATCActct                                                                   <  2:58296/143‑1 (MQ=255)

                                                                            tGAATACGCCACCATTATGGCGCTGACCGCTGGCGTCAGCATGACCGTTTCATTCTCCACGCCATTTGCGCTGGGAATTTTTAAGCCACGTACGTTGATGATCACCTCGCAGGTGTTATTCCTGGCGGCGGGGATCACTCTTg                                                                 <  2:316691/143‑1 (MQ=255)

                                                                            tGAATACGCCACCATTATGGCGCTGACCGCTGGCGTCAGCATGACCGTTTCATTCTCCACGCCATTTGCGCTGGGAATTTTTAAGCCACGTACGTTGATGATCACCTCGCAGGTGTTAAGCACGGCGGCGGGGAACACTCTTg                                                                 >  1:14195/1‑143 (MQ=255)

                                                                             gaaggtgcgaccaTTATGGCGCGGACCGCTGGCGTCAGCATGACCGTTTCATTCTCCACGCCATTTGCGCTGGGAATTTTTAAGCCACGTACGTTGATGATCACCTCGCAGGTGTTATTCCTGGCGGCGGGGATCACTCTTGc                                                                <  1:276866/134‑1 (MQ=255)

                                                                                 aCGCCACCATTATGGCGCTGACCGCTGGCGTCAGCATGACCGTTTCATTCTCCCCGCCATTTGCGCTGGGAATTTTTAAGCCACGTCCGTTGATGATCACCTCCCACGTGTTATTCATGCCGGCCGGGGTCACCCTTcccact                                                            >  1:720609/1‑140 (MQ=255)

                                                                                   gCCACCATTGTGGCGCTGCCCGCTGGCGTCAGCAGTTCCGTCTCGTTGTCCCCGCCATGTGCTCTGGTGATTTTTAAGCCACGTACGTTGTTGATTGCCTCGCAGGTGTTATTCCTGGCGGCGGGGATCACTCTTGCCGTTTc                                                          <  1:1001449/143‑1 (MQ=255)

                                                                                   gCCACCATTATGGCGCTGACCGCTGGCGTCAGCATGACCGTTTCATTCTCCACGCCATTTGCGCTGGGAATTTTTAAGCCACGTACGTTGATGATCACCTCGCAGGTGTTATTCCTGGCGGCGGGGATCACTCTTGCCGTTTc                                                          <  1:142324/143‑1 (MQ=255)

                                                                                    ccaccaTTATGGCGCTGACCGCTGGCGTCAGCATGACCGTTTCATTCTCCACGCCATTTGCGCTGGGAATTTTTAAGCCACGTACGTTGATGATCACCTCGCAGGTGTTATTCCTGGCGGCGGGGATCACTCTTGCCGTTTCa                                                         <  2:83346/143‑1 (MQ=255)

                                                                                     cagcaTTATGGCGCGGACCGCTGGCGGCAGCATGTCTGTTTCCTTCTCCCGGCCATTTGCGCTGGGAATTTTTAAGCCACGTACGTTGATGATCACCTCGCAGGTGTTATTCCTGGCGGCGGGGATCACTCTTGCCGTTTCAc                                                        <  1:750773/140‑1 (MQ=255)

                                                                                     cacccTTATGGCGCTGACCGCTGGCGTCAGCATGACCGTTTCATTCTCCACGCCATTTGCGCTGGGAATTTGTAAGCCACGTACGTTGATGATCACCTCGCAGGTGTTATTCCTGGCGGCGGGGATCACTCTTGCCGTTTCAc                                                        <  1:28718/143‑1 (MQ=255)

                                                                                     caccaTTATGGCGCTGACCGCTGGCGTCAGCATGACCGTTTCATTCTCCACGCCATTTGCGCTGGGAATTTTTAAGCCACGTACGTTGATGATCACCTCGCAGGTGTTATTCCTGGCGGCGGGGATCACTCTTGCCGTTTCAc                                                        >  1:932502/1‑143 (MQ=255)

                                                                                     caccaTTACGGCCCTGACCGCTGGCGTCAGCATGACCGTTTCATTCTCCACGCCATTTGCGCTGGGAATTTGTAAGCCACGTACGTTGATGATCACCTCGCAGGTGTTATTCCTGGCGGCGGGGATCACTCTTGCCGTTTCAc                                                        <  2:886952/143‑1 (MQ=255)

                                                                                         agcagggCGCTGACCGCTGTCGTCAGCATGACCGTTTCCTGCGCCTCGCCATTTGCGCTGGGAATTTTTAAGCCACGGACGTTGATGATCACCTCGCAGGTGTTATTCCTGGCGGCGGGGATCACTCTTGCCGTTTCACCTTc                                                    <  1:315982/138‑1 (MQ=255)

                                                                                          ttttGGCGCTGACCGCTGTCGTCAGCATGACCGTGTCATTCTCCACGCCATTTGCGCTGGGAATTTTTAAGCCACGTACGTTGATGATCACCTCGCAGGTGTTATTCCTGGCGGCGGGGATCACTCTTGCCGTTTCACCTTcc                                                   <  2:302363/140‑1 (MQ=255)

                                                                                             tGGCGCTGACCGCTGGCGTCAGCATGCCCGTTTCATTCTCCACGCCATTTGCGCTGGGAATTTTTAAGCCACGTACGTTGATGATCACCTCGCAGGTGTTATTCCTGGCGGCGGGGATCACTCTTGCCGTTTCACCTTCCCAt                                                >  2:177178/1‑143 (MQ=255)

                                                                                             tGGCGCTGACCGCTGGCGTCAGCATGACCGTTTCATTCTCCACGCCATTTGCGCTGGGAATTTTTAAGCCACGTACGTTGATGATCACCTCGCAGGTGTTATTCCTGGCGGCGGGGATCACTCTTGCCGTTTCACCTTCCCAt                                                >  2:401364/1‑143 (MQ=255)

                                                                                               gcgcTGACCGCTGGCGTCAGCATGACCGTTTCATTCTCCACGCCATTTGCGCTGGGAATTTTTAAGCCACGTACGTTGATGATCACCTCGCAGGTGTTATTCCTGGCGGCGGGGATCACTCTTGCCGTTTCACCTTCCCATGc                                              >  2:624821/1‑143 (MQ=255)

                                                                                               gcgcTGACCGCTGGCGTCAGCATGACCGTTTCATTCTCCACGCCATTTGCGCTGGGAATTTTTAAGCAACGTACGTTGATGATCACCTCGCAGGTGTTATTCCTGGCGCAGGGGATCCGTCTTGGTGTTTCatcgtcgcacgc                                              >  1:684077/1‑132 (MQ=255)

                                                                                                 gcTGACCGCCGGTGTCAGCCTGCCCGTTTCACTCTCCATGCCATTTGCGCTGGGAATTTTTAAGCCACGTACGTTGATGATCACCTCGCAGGTGTTATTCCTGGCGGCGGGGATCACTCTTGCCGTTTCACCTTCCCATGCgg                                            <  2:114217/143‑1 (MQ=255)

                                                                                                    tcccGCTGGCGTCCGCATGACCGTTTCATTCTCCACGCCATTTGCGCTGGGAATTTTTAAGCCACGTACGTTGATGATCACCTCGCAGGTGTTATTCCTGGCGGCGGTGATCACTCTTGCCGTTTCACCTTCCCATGCGGttt                                         <  1:574658/141‑1 (MQ=255)

                                                                                                    gACCGCTGGCGTCAGCTTGTCCGTTTCATTCTCCACTCCATTTGCGCTGGGAATTTTTAAGCCACGTACGTTGATGTTCACCTCGCAGGTGTTATTCCTGGCGGCGGGGATCACTCTTGCCGTTTCACCTTCCCATGCGGttt                                         <  1:156269/143‑1 (MQ=255)

                                                                                                      ccGCGGGCGTCAGCATGACCGTTTCATTCTCCACGCCAGTTGCGCTGGGAATTTTTAAGCCACGTACGTTGATGATCACCTCGCAGGTGTTATTCCTGGCGGCGGGGATCACTCTTGCCGTTTCACCTTCCCATGCGGTTtct                                       <  2:1008377/143‑1 (MQ=255)

                                                                                                           ggCGTGAGCATGACCGTTGCATTCTCCACGCCATTTGCGCTGGGAATTTTTAAGCCTCGTAGGTTGATGATCACCTCGCAGGTGTTATTCCTGGCGGCGGGGATCACTCTTGCCGTTTCACCTTCCCATGCGGTTTCTCTGtt                                  <  1:373327/143‑1 (MQ=255)

                                                                                                            gCGTCAGCATGGCCGTTTCATTCTCCACGCCATTTGCGCTGGGAATTTTTAAGCCACGTACGTTGATGATCACCTCGCAGGTGTTATTCCTGGCGGCGGGGATCACTCTTGCCGTTTCACCTTCCCATGCGGTTTCTCTGttt                                 <  1:875839/143‑1 (MQ=255)

                                                                                                            gCGTCAGCATGACCGTTTCATTCTCCACGCCATTTGCGCTGGGAATTTTTAAGCCACGTACGTTGATGATCACCTCGCAGGTGTTATTCCTGGCGGCGGGGATCACTCTTGCCGTTTCACCTTCCCATGCGGTTTCTCTGttt                                 <  1:1018480/143‑1 (MQ=255)

                                                                                                               tCAGCATGACCGTTTCATTCTCCACGCCATTTGCGCTGGGAATTTTTAAGCCACGTACGTTGATGATCACCTCGCAGGTGTTATTCCTGGCGGCGGGGATCACTCTTGCCGTTTCACCTTCCCATGCGGTTTCTCTGTTTGGt                              <  2:932502/143‑1 (MQ=255)

                                                                                                               tCAGCATGACCGTTTCATTCTCCACGCCAATTGCGCTGGGAATTTTTAAGCCACGTACGTTGATGATCACCTCGCAGGTGTTATTCCTGGCCGCGGGGATCACTCATGCCGTTTCACATTCCCATGCGGTTTCACTGTTTGGt                              >  2:430414/1‑143 (MQ=255)

                                                                                                                      gACCGTTTCATTCTCCACGCCATTTGCGCTGGGAATTTTTAAGCCACGTACGTTGATGATCACCTCGCAGGTGTTATTCCTGGCGGCGGGGATCACTCTTGCCGTTTCACCTTCCCATGCGGTGTCTCTGTTTGGTCTCACGc                       >  2:212893/1‑143 (MQ=255)

                                                                                                                            cgagctctcCACGCCATTTGCGCTGGGAATTTTTAAGCCACGTACGTTGATGATCACCTCGCAGGTGTTATTCCTGGCGGCGGGGATCACTCTTGCCGTTTCACCTTCCCATGCGGTTTCTCTGTTTGGTATCACGCTGAttt                 <  2:747385/138‑1 (MQ=255)

                                                                                                                                ttCTCCACGCCATTTGCGCTGGGAATTTTTAAGCCACGTACGTTGATGATCACCTCGCAGGTGTTATTCCTGGCGGCGGGGATCACTCTTGCCGTTTCACCTTCCCATGCGGTTTCTCTGTTTCGTATCACGCTGCTTTgcgc             >  1:771978/1‑143 (MQ=255)

                                                                                                                                atgctgaCGCCATTTGCGCTGGGAATTTTTAAGCCACGTACGTTGATGATCACCTCGCAGGTGTTATTCCTGGCGGCGGGGATCACTCTTGCCGTTTCACCTTCCCATGCGGTTTCTCTGTTTGGTATCACGCTGATTTgcgc             <  2:527447/137‑1 (MQ=255)

                                                                                                                                   tcCACGCCATTTGCGCTGGGAATTTTTAAGCCACGTACGTTGATGATCACCTCGCAGGTGTTATTCCTGGCGGCGGGGATCACTCTTGCCGTTTCACCTTCCCATGCGCTTTCTCTGTTTCGTATCACGCTGCTTTGTGCTgg          >  2:136939/1‑143 (MQ=255)

                                                                                                                                   tcCACGCCATTTGCGCTGGGAATTTTTAAGCCACGTACGTTGATGATCACCTCGCAGGTGTTATTCCTGGCGGCGGGGATCACTCTTGCCGGTTCACCTTCCCATGCGTTTTCTTTGTTTGGTATCACGCTGGttttagatcg          >  1:747385/1‑136 (MQ=255)

                                                                                                                                   tcCACGCCATTTGCGCTGGGAATTTTTAAGCCACGTACGTTGATGATCACCTCGCAGGTGTTATTCCCGGCGGCGGGGATCACTCTTGCCGTTTCACCTTCCCATGCGGTTTCTCTGTTTGGTATCACGCTGATTTGCGCCgg          >  1:531845/1‑143 (MQ=255)

                                                                                                                                    ccACGCCATTTGCGCTGGGAATTTTTAAGCCACGTACGTTGATGATCACCTCGCAGGTGTTATTCCTGGCGGCGGGGATCACTCTTGCCGTTTCACCTTCCCATGCGGTTTCTCTGTTTGGTATCACGCTGATCTCCGCCGGt         >  1:71369/1‑143 (MQ=255)

                                                                                                                                      aCGCCCTTTGCGCTGGGAATTTTTAAGCCACGTACGTTGATGATCACCTCGCAGGTGTTATTCCTGGCGGCGGGGATAACTATTGGCGTTTAAATTTCCCATGCGGTTCATCTGTTTGGTATTACGCTGATTTGCGACGGtgt       >  1:884286/1‑141 (MQ=255)

                                                                                                                                      aCGCCATTTGCGCTGGGAATTTCTAAGCCACGCACGTCGATGATCACCTCGCCGGTGTTATTCCTGGCGGCGGGGATCACTCTTGCCGTTTCACCTTCCCATGCGGTTTCTCTGTTTGGTATCACGCTGATTTGCGCCGGttt       <  2:286391/143‑1 (MQ=255)

                                                                                                                                        ggcATTTGATCTGGGAATTTGCAAGCCGCGTCCGTTGATGATCACCTCGCAGGTGTTATTCCTGGCGGGGGGGATCACTCTTGCCGTTGCACCTTCCCATGCGGTTTCTCTGTTTGGTATCACGCTGATTTGCGCCGGTTtct     <  1:238771/141‑1 (MQ=255)

                                                                                                                                        gCCATTTGCGCTGGGAATTTTTAAGCCACGTACGTTGATGATCACCTCGCAGGTGTTATTCCTGGCGGCGGGGATCACTCTTGCCGTTTCACCTTCCCATGCGGTTTCTCTGTTTGGTATCACGCTGATTTGCGCCGGTTtct     >  2:155295/1‑143 (MQ=255)

                                                                                                                                        gCCATTTGCGCTGGGAATTTTTAAGCCACGTACGTTGATGATCACCTCGCAGGTGTTATTCCTGGCGGCGGGGATCACTCTTGCCGTTTCACCTTCCCATGCGGTTTCTCTGTTTGGTATCACGCTGATTTGCGCCGGTTtct     <  2:28400/143‑1 (MQ=255)

                                                                                                                                           aTTTGCGCTGGGAATCTTTACGCCACGTACTGTAAAAAAAAGCGCTCATGTGTTATTCCTGGCGGCGGGGATCACTCTGGCCGTTTCACCTTCCCATGCGGTTTCTCTGTTTGGTATCACGCTGATTTGCGCCGGTTTCTCgg  <  2:1050769/143‑1 (MQ=255)

                                                                                                                                           aTTTGCGCGGGGAATTTTTAAGCCACGTACGTTGATGATCACCTCGCAGGTGTTATTCCTGGCGGCGGGGATCACTCTTGCCGTTTCACCTTCCCATGCGGTTTCTCTGTTTGGTATCACGCTGCTTTGCGCCGGTTTCTCgg  >  1:709849/1‑143 (MQ=255)

TCAGCGTTTCGGTGATCCTCACTTTCGTCAACACGTCACCGGTATTGCTGATGGAAATCATGGGGTTTGAGCGCGGTGAATACGCCACCATTATGGCGCTGACCGCTGGCGTCAGCATGACCGTTTCATTCTCCACGCCATTTGCGCTGGGAATTTTTAAGCCACGTACGTTGATGATCACCTCGCAGGTGTTATTCCTGGCGGCGGGGATCACTCTTGCCGTTTCACCTTCCCATGCGGTTTCTCTGTTTGGTATCACGCTGATTTGCGCCGGTTTCTCGG  >  NC_000913/3892251‑3892532

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 8 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.