Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,769,672 (A)8→7 pseudogene (1/111 nt) yibV → pseudogene, putative cryptic Rhs immunity protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,769,6650A.97.5% 342.6 / ‑0.5 79pseudogene (322/327 nt)yibVpseudogene, putative cryptic Rhs immunity protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  major base . (51/26);  minor base G (1/1);  total (52/27)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

GATGCTGGACTTTCCGAATCCTATACATGCTATTTATTAAGTAAGGGAAAGATCATAAGACCATATCTGAAAAATCTAAATCCACTCCAACTTGCCGCTGATTGCATTGAAACAGTAAATAAAATAAAAGATAAGAATAAAAAAAATCATTGATATAAATTCAGTTAATATTTGTAGTGATGATAAAAATATAAAATTGAGAGTTAATAGTACTATTATGGCCATTGATGATTCTATAAAGTGCATCGATGAATGATAACTTAATTTTATTTAA  >  NC_000913/3769527‑3769800
                                                                                                                                           |                                                                                                                                       
gATGCTGGACTTTCCGAATCCTATACATGCTATTTATTAAGTAAGGGAAAGATCATAAGACCATATCTGAAAAATCTAAATCCACTCCAACTTGCCGCTGATTGCATTGAAACAGTAAATAAAATAAAAGATAAGAATaaaaa                                                                                                                                     >  1:733552/1‑143 (MQ=255)
 gagccggACTTGGCTAATCCCACACACGCTAATTATTAAGTAACGGAAAGATCATGAGGCCAGGTCTGAAAAAGCTAAATCCACTCCAACTTGCCGCGGATTGCATTGAAACAGTAAATAAAATAAAAGATAAGAATaaaaaa                                                                                                                                    <  2:660496/138‑1 (MQ=255)
 aTGCTGGACTTTCCGAATCCTATACATGCTATTTATTAAGTAAGGGAAAGATCATAAGACCATATCTGAAAAATCTAAATCCACTCCAACTTGACGCTGCTTGCATTGAACCAGTAAATAAAATAAAAGATAAGAATaaaaaa                                                                                                                                    >  2:809754/1‑143 (MQ=255)
    cTGGACTTTCCGAATCCTATACATGCTATTTATTAAGTAAGGGAAAGATCATAAGACCATATCTGAAAAATCTAAATCCACTCCAACTTGCCGCTGATTGCATTGAAACAGTAAATAAAATAAAAGATAAGAATaaaaaaatc                                                                                                                                 >  2:237703/1‑141 (MQ=255)
    cTGGACTTTCCGAATCCTATACATGCTATTTATTAAGTAAGGGAAAGATCATAAGACCATATCAGAAAAAACTAAATCCACTCCAACTTGACGCCGATTGCAAGGAAACCGCACATAAAATAAAAGATAAGAATaaaaaaata                                                                                                                                 >  2:470093/1‑141 (MQ=255)
          tttCCGAATCCTATACATGCTATTTATTAAGTAAGGGAAAGATCATAAGACCATATCTGAAAAATCTAAATCCACTCTAACTTGCCGCTGATTGCATTGAAACAGTAAATAAAATAAAAGATAAGAATAAAAAAATCATTGat                                                                                                                          >  1:1261323/1‑143 (MQ=255)
          tttCCGAATCCTATACATGCTATTTATTAAGTAAGGGAAAGATCATAAGACCATATCTGAAAAATCTAAATCCACTCCAACTTGCCGCTGATTGCATTGAAACAGTAAATAAAATAAAAGATAAGAATAAAAAAATCATTGat                                                                                                                          >  2:933644/1‑143 (MQ=255)
               gAATCCTATACATGCTATTTATTAAGTAAGGGAAAGATCATAAGACCATATCTGAAAAATCTAAATCCACTCCAACTTGCCGCTGATTGCATTGAAACAGTAAATAAAATAACAGATAAGAATAAAAAAATCATTGATATaaa                                                                                                                     >  2:787969/1‑143 (MQ=255)
                      ataCATGCTATTTATTAAGTAAGGGAAAGATCATAAGACCATATCTGAAAAATCTAAATCCACTCCAACTTGCCGCTGCTTGCATTGAAACAGTAAATAAAATAAAAGATAAGAATAAAAAAATCATTGATATAAATTAAGtt                                                                                                              >  2:1337684/1‑143 (MQ=255)
                         cATGCTATTTATTAAGTAAGGGAAAGATCATAAGACCATATCTGAAAAATCTAAATCCACTCCAACTTGCCGCTGATTGCATTGAAACAGTAAATAAAATAAAAGATAAGAATAAAAAAATCATTGATATAAATTCAGATAat                                                                                                           >  1:977380/1‑143 (MQ=255)
                          aTGCTATTTATTAAGTAAGGGAAAGATCATAAGACCATATCTGAAAAATCTAAATCCACTCCAACTTGCCGCTGATTGCATTGAAACAGTAAATAAAATAAAAGATAAGAATAAAAAAATCATTGATATAAATTCAGTTAata                                                                                                          >  1:1242963/1‑143 (MQ=255)
                           tGCTATTTATTAAGTAAGGGAAAGATCATAAGACCATATCTGAAAAATCTAAATCCACTCCAACTTGCCGCTGATTGCATTGAAACAGTAAATAAAATAAAAGATAAGAATAAAAAAATCATTGATATAAATTCAGTTAatat                                                                                                         >  1:499718/1‑143 (MQ=255)
                           tGCTATTTATTAAGTAAGGGAAAGAGCATAAGACCATATCTGAAAAATCTAAATCCACTCCAACTTGCCGCTGATTGCATTGAAACAGTAAATAAAATAAAAGATAAGAATAAAAAAATCATTGATATAAATTCAGTTAatat                                                                                                         >  1:1302880/1‑143 (MQ=255)
                             cTATTTATTAAGTAAAGGAAAGATCATAAGACCATATCTGAAAAATCTAAATCCACTCCAACATGCCGCTGATTGCATTGAAACAGTAAATAAAATAAAAGATAAGAATAAAAAAATCATTGATATAAATTCAGTTAATAttt                                                                                                       <  2:1056440/143‑1 (MQ=255)
                             cTAGTTATGAAGTAAGGGAAAGATCATAAGACCATATCTGAAAAATCTAAATCCACTCCAACTTGCCGCTGATTGCATTGAAACAGTAAATAAAATAAAAGATAAGAATAAAAAAATCATTGATATAAATTCAGTTAATAttt                                                                                                       <  1:465284/143‑1 (MQ=255)
                               attaagtaagtaagAGAAAGAGCATAAGAACATATATGAAAAATATAAATACAAACAAACTTGGAGATGAAAGAAATGAAACAGTAAAAAAAATAAAAGATAAAAATAAAAAAATCATTGATATAAATTCAGTTAATATTTGt                                                                                                     <  2:103929/137‑1 (MQ=255)
                                tttattAAGTAAGGGAAAGATCATAAGACCATATCTGAAAAATCTAAATCCACTCCAACTTGCCGCTGATTGCATTGAAACAGTAAATAAAATAAAAGATAAGAATAAAAAAATCATTGATATAAATTCAGTTAATATTTGTa                                                                                                    >  2:615346/1‑143 (MQ=255)
                                    ttaAGTAAGGGAAAGATCATAAGACCATATCTGAAAAATCTAAATCCACTCCAACTTGCCGCTGATTGCATTGAAACAGTAAATAAAATAAAAGATAAGAATAAAAAAATCATCGATATAAATTCAGTTAATATTTGTAGtga                                                                                                >  2:570273/1‑143 (MQ=255)
                                        gtaagGGAAAGATCATAAGACCATATCTGAAAAATCTAAATCCACCCCAACTTGCCGCTGATTGCATTGAAACAGTAAATAAAATAAAAGATAAGAATAAAAAAATCATTGATATAAATTCAGTTAATATTTATAGTgatgat                                                                                            >  2:512065/1‑143 (MQ=255)
                                          aagGGAAAGATCATAAGACCATATCTGAAAAATCTAAATCCACTCCAACTTGCCGCTGATTGCATTGAAACAGTAAATAAAATAAAAGATAAGAATAAAAAAATCATTGATATAAATTCAGTTAATATTTGTAGTGATGATaa                                                                                          >  2:1235273/1‑143 (MQ=255)
                                           agGGAAAGATCATAAGACCATATCTGAAAAATCTAAATCCACTCCAACTTGCCGCTGATTGCATTGAAAACGTATAAAAAACACAAGAGTCAGGGAAAGAAATCATTGATATAAATTCAGTTAATATTTGTAGTGATGATaaa                                                                                         >  2:966781/1‑143 (MQ=255)
                                            gggAAAGATCATAAGACCATATCTGAAAAATCTAAATCCACTCCAACTTGCCGCTGATTGCATTGAAACAGTAAATAAAATAAAAGATAAGAATAAAAAAATCATTGATATAAATTCAGTTAATATTTGTAGTGATGATaaaa                                                                                        >  2:986599/1‑143 (MQ=255)
                                            gggAAAGATCATAAGACCATATCTGAAAAATCTAAATCCACTCCAACTTGCCGCTGATTGCATTGAAACAGTAAATAAAATAAAAGATAAGAATAAAAAAATCATTGATATAAATTCAGTTAATATTTGTAGTGATGATaaaa                                                                                        >  2:558863/1‑143 (MQ=255)
                                            gggAAAGATCATAAGACCATATCTGAAAAATCTAAATCCACACCAACATGCCGCTGATTGCATTGAAACAGTAAATAAAATAAAAGATAAGAATAAAAAAATCATTGATATAAATTCAGTTAATATTTGTAGTGATGATaaaa                                                                                        <  2:577783/143‑1 (MQ=255)
                                                  gaacATAAGACCAAATCTGAAAAATCTAAATACACACAAACTAACCGCAGAATACATTGAAACAGTAAATAAAATAAAAGATAAGAATAAAAAAATCATTGATATAAATTCAGTTAATATTTGTAGTGATGATAAACATCTaa                                                                                  <  2:1042932/140‑1 (MQ=255)
                                                  gATCATAAGACCATATCTGAAAAATCTAAATCCACTCCAACTTGCCGCTGATTGCATTGAAACAGTAAATAAAATAAAAGATAAGAATAAAAAAATCATTGATATAAATTCAGTTAATATTTGTAGTGATGATAAAAATATaa                                                                                  >  1:978211/1‑143 (MQ=255)
                                                  gATCATAAGACCATATCTGAAAAATCTAAATCCACTACAACTTGCCGCTGATTGCATTGAAACAGTAAATAAAATAAAAGATAAGAATAAAAAAATCATTGATATAAATTCAGTTAATATTTGTAGTGATGATAAAAATATaa                                                                                  <  2:425801/143‑1 (MQ=255)
                                                  aaccacaaGACCATATCTGAAAAATCTAAATCCACTCCAACTTGCCGCTGATTGCATTGAAACAGTAAATAAAATAAAAGATAAGAATAAAAAAATCATTGATATAACTTCAGTTAATATTTGTAGTGATGATAAAAATATaa                                                                                  <  1:822482/137‑1 (MQ=255)
                                                   aTCATAAGACCATATCTGAAAAATCTAAATCCACTCCAACTTGCCGCTGATTGCATTGAAACAGTAAATAAAATAAAAGATAAGAATAAAAAAATCATTGATATAAATTCAGTTAATATTTGTATTGATGATAAAAATATaaa                                                                                 >  2:16033/1‑143 (MQ=255)
                                                       tAAGACCATATCTGAAAAATCTAAATCCACTCCAACTTGCCGCTGATTGCATTGAAACAGTAAATAAAATAAAAGATAAGAATAAAAAAATCATTGATATAAATTCAGTTAATATTTGTAGTGATGATAAAAATATAAAATTg                                                                             >  1:342460/1‑143 (MQ=255)
                                                        aaGAACATATAAAAAAAATATAAATCCTCTACAACATGACGCTGAATGAATAGAAATAGTAAATAAAATAAAAGATAAGAATAAAAAAATCATTGATATAAAGTCAGTGAATATTTGTAGTGATGATAAAAATATAAAATTga                                                                            <  2:746876/143‑1 (MQ=255)
                                                            ccATATCTGAAAAATCTAAATCCACTCCAACTTGCCGCTGATTGCATTGAAACAGTAAATAAAATAAAAGATAAGAATAAAAAAATCATTGATATAAATTCAGTTAATATTTGTAGTGATGATAAAAATATAAAATTGAGAGt                                                                        >  1:1268224/1‑143 (MQ=255)
                                                                 tctcAAAAATCTAAATCCACTCCAACTTGCCGCTGATTGCATTGAAACAGTAAATAAAATAAAAGATAAGAATAAACAAATCATTGATATAAATTCAGTTAATATTTGTAGTGATGATAAAAATATAAAATTGAGAGTTAATa                                                                   <  1:194613/143‑1 (MQ=255)
                                                                 tCTGAAAAATCTAAATCCACTCCAACTTGCCGCTGATTGCATTGAAACAGTAAATAAAATAAAAGATAAGAATAAAAAAATCATTGATATAAACTCAGTTAATATTTGTAGTGATGATAAAAATATAAAATTGAGAGTTAATa                                                                   <  2:641269/143‑1 (MQ=255)
                                                                  cTGAAAAATCTAAATCCACTCCAACTTGACGCTGATTGCATTGGAACAGTAAATAAAATAAAAGATAAGAATAAAAAAATCATTGATATAAATTCAGTTAATATTTGTAGTGATGATAAAAATATAAAATTGAGAGTTAATAg                                                                  <  1:924439/143‑1 (MQ=255)
                                                                   tGAAAAATCTAAATCCACTCCAACTTGCCGCTGATTGCATTGAAACAGTAAATAAAATAAAAGATAAGAATAAAAAAATCATTGATATAAATTCAGTTAATATTTGTAGTGATGATAAAAATATAAAATTGAGAGTTaa                                                                     <  1:1134190/139‑1 (MQ=255)
                                                                   tGAAAAATCTAAATCCACTCCAACTTGCCGCTGATTGCATTGAAACAGTAAATAAAATAAAAGATAAGAATAAAAAAATCATTGATATAAATTCAGTTAATATTTGTAGTGATGATAAAAATATAAAATTGAGAGTTaa                                                                     >  2:1134190/1‑139 (MQ=255)
                                                                   tGAAAAATCTAAATCCACTCCAACTTGCCGCTGATTGCATTGAAACAGTAAATAAAATAAAAGATAAGAATAAAAAAATCATTGATATAAATTCAGTTAATATTTGTAGTGATGATAAAAATATAAAATTGAGAGTTAATAGt                                                                 >  1:1338868/1‑143 (MQ=255)
                                                                   tGAAAAATCTAAATCCACTCCAACTTGCCGCTGATTGCATTGAAACAGTAAATAAAATAAAAGATAAGAATAAAAAAATCATTGATATAAATTCAGTTAATATTTGTAGTGATGATAAAAATATAAAATTGAGAGTTAATAGt                                                                 >  1:259521/1‑143 (MQ=255)
                                                                    gAAAAATCTAAATCCACTCCAACTTGCCGCTGATTGCATTGAAACAGTAAATAAAATAAAAGATAAGAATAAAAAAATCATTGATATAAATTCAGTTAATATTTGTAGTGATGATAAAAATATAAAATTGAGAGTTAATAGTa                                                                >  2:1108938/1‑143 (MQ=255)
                                                                     aaaaaTCTAAATCCACTCCAACTTGCCGCAGCAGTGAGATAAACAGTAAATAAAATAAAACATAAGAATAAAAAAATCATTGATATAAATTCAGTTAAGATTTGTAGAGATGATAAAAATAAAAAATTGAAAGATAATAGTAc                                                               >  2:975612/1‑143 (MQ=255)
                                                                       aaaTCTAAATCCACTCCAACTTGCCGCTGATTGCATTGAAACAGTAAATAAAATAAAAGATAAGAATAAAAAAATCATTTATATAAATTCAGTTAATATTTGTAGTGATGATAAAAATATAAAATAGAGAGTTAATAGTACta                                                             >  1:384886/1‑143 (MQ=255)
                                                                          tCTAAAACCAATCGAACATGCAACTGATTGCATTGAAACAGTAAATAAAATAAAAGATAAGAATAAAAAAATCATTGATATAAATTCAGTTAATATTTGTAGTGATGATAAAAATATAAAATTGAGAGTTAATAGTACtatta                                                          <  2:620237/143‑1 (MQ=255)
                                                                           cTAAATCCACTCCAACTTGCCGCTGATTGCATTGAAACAGTAAATAAAATAAAAGATAAGAATAAAAAAATCATTGATATAAATTCAGTTAATATTTGTAGTGATGATAAAAATATAAAATTGAGAGTTAATAGTACtattat                                                         >  1:77971/1‑143 (MQ=255)
                                                                               aTCCACTCCAACTTGCCGCTGATTGCATTGAAACAGTAAATAAAATAAAAGATAAGAATAAAAAAATCATTGATATAAATTCAGTTAATATTTGTAGTGATGATAAAAATATAAAATTGAGAGTTAATAGTACTATTATGGcc                                                     >  1:894824/1‑143 (MQ=255)
                                                                                  cACTCCAACTTGCCGCTGATTGCATTGAAACAGTAAATAAAATAAAAGATAAGAATAAAAAAATCATTGATATAAATTCAGTTAATATTTGTAGTGATGATAAAAATATAAAATTGAGAGTTAATAGTACTATTATGGCCAtt                                                  <  1:1025481/143‑1 (MQ=255)
                                                                                   aCTCCAACTTGCCGTTGATTGCATCGAAACAGGAAAGAAAATAAAAGATAAGAAGAAAAAAATCATTTATATTAAGTCAGTGAATATTTGTAGTGATTATAAAAATATAAAATTGAGTGTTAAGAGTACTATTATGGCCATtg                                                 <  1:548994/143‑1 (MQ=255)
                                                                                     tCCAACTTGCCGCTGATTGCATTGAAACAGTAAATAAAATAAAAGATAAGAATAAAAAACTCATTGATATAAATTCAGTTAATATTTGTAGTGATGATAAAAATATAAAATTGAGAGTTAATAGTACTATTATGGCCATtgat                                               >  1:935710/1‑143 (MQ=255)
                                                                                     tCCAACTTGCCGCTGATTGCATTGAAACAGTAAATAAAATAAAAGATAAGAATAAAAAAATGATTGATATAAATTCAGTTAATATTTGTAGTGATGATAAAAATATAAAATTGAGAGTTAATAGGACTATTATGGCCATtgag                                               >  1:10237/1‑142 (MQ=255)
                                                                                     tCCAACTTGCCGCTGATTGCATTGAAACAGTAAATAAAATAAAAGATAAGAATAAAAAAATCATTGATATAAATTCAGTTAATATTTGTAGTGATGATAAAAATATAAAATTGAGAGTTAATAGTACTATTATGGCCAAtgat                                               >  1:1261110/1‑143 (MQ=255)
                                                                                       cacccacccGCTGAGTGCATTGAAACAGTAAATAAAATAAAAGATAAAAATAAAAAAATCATTGATATAAATTCAGTTAATATTTGTAGTGATGATAAAAATATACAATTGAGAGTTAATAGTACTATTATGGCCATtgatga                                             <  1:1098701/136‑1 (MQ=255)
                                                                                       cAACTTGCCGCTGATTGCATTGAAACAGTAAATAAAATAAAAGATAAGAATAAAAAAATCATTGATATAAATTCAGTTAATATTTGTAGTGATGATAAAAATATAAAATTGAGAGTTAATAGTACTATTATGGCGATtgatga                                             >  1:1243375/1‑143 (MQ=255)
                                                                                       cAACTTGCCGCTGATTGCATTGAAACAGTAAATAAAATAAAAGATAAGAATAAAAAAATCATTGATATAAATTCAGTTAATATTTGTAGTGATGATAAAAATATAAAATTGAGAGTTAATAGTACTATTATGGCCATtgatga                                             >  1:1262340/1‑143 (MQ=255)
                                                                                        aaCTTGCCGCTGATTGCATTGAAACAGTAAATAAAATAAAAGATAAGAATAAAAAAATCATTGATATAAATTCAGTTAATATTTGTAGTGATGATAAAAATATAAAATTGAGAGTTAATAGTACTATTATGGCCATTgatgat                                            >  2:448171/1‑143 (MQ=255)
                                                                                          cTTGCCGCTGATTGCATTGAAACAGTAAATAAAATAAAAGATAAGAATAAAAAAATCATTGATATAAATTCAGTTAATATTTGTAGTGATGATAAAAATATAAAATTGAGAGTTAATAGTACTATTATGGCCATTGATGATTc                                          >  1:1205985/1‑143 (MQ=255)
                                                                                             gCCGCTGATTGCATTGAAACAGTAAATAAAATAAAAGATAAGAATAAAAAAATCATTGATATAAATTCAGTTAATATTTGTAGTGATGATAAAAATATAAAATTGAGAGTTAATAGTACTATTATGGCAATTGATGATTCtat                                       >  2:451912/1‑143 (MQ=255)
                                                                                              ccGCTGATTGCATTGAAACAGTAAATAAAATAAAAGATAAGAATAAAAAAATCATTGATATAAATTCAGTTAATATTTGTAGTGATGATAAAAATATAAAATTGAGAGTTAATAGTACTATTATGGCCATTGATGATTCtata                                      >  1:1088313/1‑143 (MQ=255)
                                                                                               cGCTGATTGCATTGAAACAGTAAATAAAATAAAAGATAAGAATAAAAAAATCATTGATATAAATTCAGTTAATATTTGTAGTGATGATAAAAATATAAAATTGAGAGTTAATAGTACTATTATGGCCATTGATGATTCTATaa                                     >  1:691042/1‑143 (MQ=255)
                                                                                               cGCTGATTGCATTGAAACAGTAAATAAAATAAAAGATAAGAATAAAAAAATCATTGATATAAATTCAGTTAATATTTGTAGTGATGATAAAAATATAAAATTGAGAGTTAATAGTACTATTATGGCCATTGATGATTCTATaa                                     >  2:615971/1‑143 (MQ=255)
                                                                                                tgcgtagttgaTTGAAACAGTAAATAAAATAAAAGATAAGAATAAAAATATCATTGATATAAATTCAGTTAATATTTGTAGTGATGATAAAAATATAAAATTGAGAGTTAATAGTACTATTATGGCCATTGATGATTCTATaa                                     <  1:1143925/133‑1 (MQ=255)
                                                                                                gatGATTGCATTAAAACAGTAAAAAAAAAAAAAGATAAGAATAAAAAAATCATTGATATAAATTCAATTAATATTTGTAGTAATGATAAAAATATAAAAATGAGAGTTAATAGTACTATTATGGCCATTGATGATTCTATaaa                                    <  1:4664/141‑1 (MQ=255)
                                                                                                gCTGATTGCATTGAAACAGTAAATAAAATAAAAGATAAGAATAAAAAAATCATTGATATAAATTCAGTTAATATTTGTAGTGATGATAAAAATATAAAATTGAGAGTTAATAGTACTATTATGGCCATTGATGATTCTATaaa                                    >  2:561691/1‑143 (MQ=255)
                                                                                                gCTGATTGCATTGAAACAGTAAATAAAATAAAAGATAAGAATAAAAAAATCATTGATATAAATTCAGTTAATATTTGTAGTGATGATAAAAATATAAAATTGAGAGTTAATAGTACTATTATGGCCATTGATGATTCTATaaa                                    <  2:688901/143‑1 (MQ=255)
                                                                                                 gcacaTTTCATTAAAACAGTAAATAAAATAAAAGATAAGAATAAAAAAATCATTGATATAAATTCAGTTAATATTTGTAGTGATGATAAAAATATAAAATTGAGAGTTAATAGTACTATTATGGCCATTGATGATTCTATaaa                                    <  2:1283238/139‑1 (MQ=255)
                                                                                                 cTGATTGCATTGAAACAGTAAATAAAATAAAAGATAAGAATAAAAAAATCATTGATATAAATTCAGTTAATATTTGTAGTGATGATAAAAATATAAAATTGAGAGTTAATAGTACTATTATGGCCATTGATGATTCTATAAAg                                   <  1:518803/143‑1 (MQ=255)
                                                                                                  tGATTGCATTGAAACAGTAAATAAAATAAAAGATAAGAATAAAAAAATCATTGATATAAATTCAGTTAATATTTGTAGTGATGATAAAAATATAAAATTGAGAGTTAATAGTACTATTATGGCCATTGATGATTCTATAAAGt                                  <  1:972077/143‑1 (MQ=255)
                                                                                                      ttGCATTGAAACAGTAAATAAAATAAAAGATAAGAATAAAAAAATCATTGATATAAATTCAGTTAATATTTGTAGTGATGATAAAAATATAAAATTGAGAGTTAATAGTATGATTATTGCCATTGATGATTCTATAAAGTGCa                               >  1:922151/1‑143 (MQ=255)
                                                                                                       tGCATTGAAACAGTAAATAAAATAAAAGATAAGAATAAAAAAATCCTTGATATAAATTCAGTTAATATTTGTAGTGATGATAAAAATATAAAATTGAGAGTTAATAGTACTATTATGGCCATTGATGATTCTATAAAGTGCAt                              <  1:51166/143‑1 (MQ=255)
                                                                                                          aTTGAAACAGTAAATAAAATAAAAGATAAGAATAAAAAAATCATTGATATAAATTCAGTTAATATTTGTAGTGATGATAAAAATATAAAATTGAGAGTTAATAGTACTATTATGGCAATTGATGATTCTATAAAGTGCATCGa                           >  2:562563/1‑143 (MQ=255)
                                                                                                           ttGAAACAGTAAATAAAATAAAAGATAAGAATAAAAAAATCATTGATATAAATTCAGTTAATATTTGTAGTGATGATAAAAATATAAAATTGAGAGTTAATAGTACTATTATGGCCATTGATGATTCTATAAAGTGCATCGat                          <  1:558283/143‑1 (MQ=255)
                                                                                                            tGAAACAGTAAATAAAATAAAAGATAAGAATAAAAAAATCATTGATATAAATTCAGTTAATATTTGTAGTGATGATAAAAATATAAAATTGAGAGTTAATAGTACTATTATGGCCATTGATGATTCTATAAAGTGCATCGatg                         >  2:1258994/1‑143 (MQ=255)
                                                                                                             gAAACAGTAAATAAAATAAAAGATAAGAATAAAAAAATCATTGATATAAATTCAGTTAATATTTGTAGTGATGATAAAAATATAAAATTGAGAGTTAATAGTACTATTATGGCCATTGATGATTCTATAAAGTGCATCGatga                        >  1:262244/1‑143 (MQ=255)
                                                                                                              aaaCAGTAAATAAAATAAAAGATAAGAATAAAAAAATCATTGATATAAATTCAGTTAATATTTGTAGTGATGATAAAAATATAAAATTGAGAGTTAATAGTACTATTATGGCCATTGATGATTCTATAAAGTGCATCGatgaa                       <  1:146235/143‑1 (MQ=255)
                                                                                                               aaCAGTAAATAAAATAAAAGATAAGAATAAAAAAATCATTGATATAAATTCAGTTAATATTTGTAGTGATGATAAAAATATAAAATTGAGAGTTAATAGTACTATTATGGCCATTGATGATTCTATAAAGTGCAGCGatgaat                      >  2:863278/1‑143 (MQ=255)
                                                                                                                   gTAAATAAAATAAAAGATAAGAATAAAAAAATCATTGATATAAATTCAGTTAATATCTGTAGTGATGATAAAAATATAAAATTGAGAGTTAATAGTACTATTATGGCCATTGATGATTCTATAAAGTGCAACGATGAATGATa                  >  2:5183/1‑143 (MQ=255)
                                                                                                                    taaataaaATAAAAGATAAGAATAAAAAAATCATTGATATAAATTCAGTTAATATTTGTAGTGATGATAAAAATATAAAATTGAGAGTTAATAGTACTATTATGGCCATTGATGATTCTATAAAGTGCATCGATGAATGATaa                 <  1:483267/143‑1 (MQ=255)
                                                                                                                    taaataaaATAAAAGATAAGAATAAAAAAATCATTGATATAAATTCAGTTAATATTTGTAGTGATGATAAAAATATAAAATTGAGAGTTAATAGTACTATTATGGCCATTGATGATTCTATAAAGTGCATCGATGAATGATaa                 >  1:200665/1‑143 (MQ=255)
                                                                                                                      aataaaataaAAGATAAGAATAAAAAAATCATTGATATAAATTCAGTTAATATTTGTAGTGATGATAAAAATATAAAATTGAGAGTTAATAGTACTATTATGGCCATTGATGATTCTATAAAGTGCATCGATGAATGATAACt               >  1:1357745/1‑143 (MQ=255)
                                                                                                                       ataaaataaaAGATAAGAATAAAAAAATCATTGATATAAATTCAGTTAATATTTGTAGTGATGATAAAAATATAAAATTGAGAGTTAATAGTACTATTATGGCCATTGATGATTCTATAAAGTGCATCGATGAATGATAACtt              >  1:639366/1‑143 (MQ=255)
                                                                                                                             taaaaGATAAGAATAAAAAAATCATTGATATAAATTCAGTTAATATTTGTAGTGATGATCAAAATATAAAATTGAGAGTTAATAGTACTATTATCGCCATTTATGATTCTATAAAGTGCATCCATGACACTTAACTTAAtttt        >  2:1012824/1‑143 (MQ=255)
                                                                                                                             taaaaGATAAGAATAAAAAAATCATTGATATAAATTCAGTTAATATTTGTAGTGATGATAAAAATATAAAATTGAGAGTTAATAGTACTATTATGGCCATTGATGATTCTATAAAGTGCATCGATGAATGATAACTTAAtttt        >  2:767213/1‑143 (MQ=255)
                                                                                                                              aaaaGATAAAAATAAAAAAATCATTGATATAAATTCAGTTAATATTTCTAGTGATGATAAAAATATAAAATTGAGAGTTAATAGTACTATTATGGCCATTGATGATTCTATAAAGTGCATCGATGAATGATAACTTAATttta       <  2:450614/143‑1 (MQ=255)
                                                                                                                                  gATAAGAATAAAAAAATCATTGATATAAATTCAGTTAATATTTGTAGTGATGATAAAAATATAAAATTGAGAGTTAATAGTACTATTATGGCCATTGATGATTCTATAAAGTGCATCGATGAATGATAACGTAATtttattta   >  1:526635/1‑143 (MQ=255)
                                                                                                                                   aTAAGAATAAAAAAATCATTGATATAAATTCAGTTAATATTTGTAGTGATGATAAAAATATAAAATTGAGAGTTAATAGTACTATTATGGCCATTGATGATTCTATAAAGTGCATCGATGAATGATAACTTAATtttatttga  >  1:532166/1‑141 (MQ=255)
                                                                                                                                           |                                                                                                                                       
GATGCTGGACTTTCCGAATCCTATACATGCTATTTATTAAGTAAGGGAAAGATCATAAGACCATATCTGAAAAATCTAAATCCACTCCAACTTGCCGCTGATTGCATTGAAACAGTAAATAAAATAAAAGATAAGAATAAAAAAAATCATTGATATAAATTCAGTTAATATTTGTAGTGATGATAAAAATATAAAATTGAGAGTTAATAGTACTATTATGGCCATTGATGATTCTATAAAGTGCATCGATGAATGATAACTTAATTTTATTTAA  >  NC_000913/3769527‑3769800

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: