BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3423821 =	NA (NA)	8 (0.110)	6/272	9.5	5.2%	intergenic (‑36/+57)	rrfD/rrlD	5S ribosomal RNA of rrnD operon/23S ribosomal RNA of rrnD operon
*	?	NC_000913	= 3946687	152 (1.940)	8 (0.110)	6/272	9.5	5.2%	intergenic (+81/‑12)	rrlC/rrfC	23S ribosomal RNA of rrnC operon/5S ribosomal RNA of rrnC operon
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 156 total aligned reads displayed.

GGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAAGC  >  NC_000913/3946545‑3946828

ggTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCtgat                                                                                                                                               >  1:285054/1‑143 (MQ=32)

    tgtAAGCGCGGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGACGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGaaa                                                                                                                                           <  2:410435/143‑1 (MQ=21)

      tgaGCGCAGCTATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAAcc                                                                                                                                         <  1:1003025/141‑2 (MQ=21)

      tAAGCGCGGCGATGGGCTGGGCTAAGCGGTACTGATGAGCCGTGAGGCTTAACCTTACAACGCGGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACa                                                                                                                                         <  2:1170933/143‑1 (MQ=11)

        aGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTTGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGa                                                                                                                                       <  2:267354/143‑1 (MQ=25)

              gtgATGCGTTGAGCTAAGCGGTACTAGTGAACCGTGAGGCTTGAGCTTACAGCGCCGAAGATGTTTTGGCGGGTGGGAGAAGATTTTCAGCCTGATACAGATGAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGc                                                                                                                                 <  2:1186654/141‑1 (MQ=11)

              gcggtgcgtgtggCTAGCCGGTACTAGTGATCGGTGAGGCGTGACCTTACAACGCCGACGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGc                                                                                                                                 <  2:1034778/131‑1 (MQ=11)

               cGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGCAGCGGGCTGATGCAACAGAATTTGcc                                                                                                                                >  2:508278/1‑143 (MQ=255)

               cGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCGGATGAAACAGAATTTGcc                                                                                                                                >  2:133755/1‑143 (MQ=21)

                gATGCGTTGAGCCGGCGGGTGCTAGTGAACCGGGAGGCGTAACCGTACGACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCt                                                                                                                               <  1:656872/143‑1 (MQ=11)

                    cGTTTATCTAACTGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACCGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTggcg                                                                                                                           <  1:933457/143‑1 (MQ=255)

                    cGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATCCAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTggcg                                                                                                                           >  2:190079/1‑143 (MQ=25)

                     gTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGGCTggcgg                                                                                                                          >  2:915513/1‑143 (MQ=21)

                      ttGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTGGGCGGATGGGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGCCTGAGGAAACAGAATTTGCCTggcggc                                                                                                                         >  2:682764/1‑143 (MQ=255)

                       tgtgCTAACCGGTACCAATGATCCGTGAGGCTCAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATATAGATTAAATCAGAACGCAGTAGCGGTCTGATGAAACAGAATTTGCCTGGCGGcc                                                                                                                        <  2:79360/140‑1 (MQ=11)

                          gcaaaCAGGTACTAATGAACCGTGAGGCTCAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTa                                                                                                                     <  1:496584/140‑1 (MQ=255)

                           cTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAg                                                                                                                    >  1:383084/1‑143 (MQ=35)

                             aaCCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGCTGCAACAGAATTTGCCTGGCGGCCGTcgcg                                                                                                                  >  2:509229/1‑143 (MQ=255)

                              aCCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGACGATGTTTTGGCGGATGAGAGAAGGTTTTCAGCCTGATACAGATTAAAGCAGAACGCAGAAGCGGTCTGATGAACCAGAAGTTGCCTGGCGGCCGTAgcgc                                                                                                                 >  2:1235468/1‑143 (MQ=11)

                              aCCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGTATTTGCCTGGCGGCCGTAgcgc                                                                                                                 >  2:1147542/1‑143 (MQ=25)

                               cctgTACTAATGAACCGTGATGCTTAACCTTACAACGCTGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAACTCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGcgcg                                                                                                                <  2:729971/140‑1 (MQ=255)

                               ccGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGcgcg                                                                                                                <  1:481355/143‑1 (MQ=34)

                                cGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCgg                                                                                                               <  2:1024472/143‑1 (MQ=35)

                                cGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCgg                                                                                                               <  2:263826/143‑1 (MQ=35)

                                 ggTACGGATGAACCGTGAGGCTTAGCCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCggt                                                                                                              <  2:691779/143‑1 (MQ=255)

                                 gctACTAATGAACCGTGAGGCTGAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGACTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCTGTTTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCggt                                                                                                              <  1:1150453/141‑1 (MQ=255)

                                   tACTAATGAACCGTGAGACTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACGGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGACGTAGCGCggggg                                                                                                            >  2:892446/1‑143 (MQ=255)

                                      tAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTcc                                                                                                         >  1:1317250/1‑143 (MQ=35)

                                      tAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTcc                                                                                                         >  1:7138/1‑143 (MQ=35)

                                       aaTGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTGTGGCGGATGAGAGAAGAGTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTccc                                                                                                        <  1:1089371/143‑1 (MQ=25)

                                         tGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCAc                                                                                                      >  1:544637/1‑143 (MQ=35)

                                          gAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCAcc                                                                                                     >  1:738559/1‑143 (MQ=35)

                                          gAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCAcc                                                                                                     >  2:633459/1‑143 (MQ=35)

                                          gAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGACTAGCGGCCGTAGCGCGGCGGTCCCAcc                                                                                                     >  1:552695/1‑143 (MQ=255)

                                            aCCGTGAGGCTTAACCTTACAACGCCGACGATGTTTTGGCGGATGCGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGACGCGGTCTGATGAAACAGAATTTGCCTGGCAGCCGTAGCGCGGTGGCCCCACCTg                                                                                                   >  2:766240/1‑143 (MQ=11)

                                             ccGTGATGCTTAACCTTACATCGCCGAAGATGTTTTGGCGGATGAGAGAAGATTGGCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGa                                                                                                  <  1:367619/143‑1 (MQ=255)

                                                      ttAACCTTAGAGCGCCGAAGATGGTTTGGCGGAGGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGcc                                                                                         <  1:141263/143‑1 (MQ=255)

                                                      ttAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGct                                                                                         >  1:693889/1‑142 (MQ=21)

                                                         aCCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGaa                                                                                      >  1:649822/1‑143 (MQ=35)

                                                           cTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACt                                                                                    <  2:1122443/143‑1 (MQ=34)

                                                            ttACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTc                                                                                   >  2:1068810/1‑143 (MQ=35)

                                                            ttACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTc                                                                                   >  1:772157/1‑143 (MQ=35)

                                                            tgagaaCGGCCAAGAGGTTGTGGCGGATGAGAGAAGATTCTCCGCCTGATACAGATTAAATCAGAACGCAGAAGCGTTCTGCTGAAACAGAAGTCGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTc                                                                                   <  2:498320/139‑1 (MQ=11)

                                                                accgccggcggtGTTTTGGAGGACGAGAGAGGATTTTCGGCCTGAGACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGaa                                                                               <  2:329141/132‑1 (MQ=11)

                                                                aaCGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGaa                                                                               <  1:117958/143‑1 (MQ=35)

                                                                aaCGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGaa                                                                               <  1:1140107/143‑1 (MQ=34)

                                                                aaCGCCGAAGATGATTTGGATGATGATAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGaa                                                                               <  2:215029/143‑1 (MQ=255)

                                                                  cGCCGAAGATGTGTTGGCGGATGAGAGAAGACTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGt                                                                             <  2:1236973/143‑1 (MQ=21)

                                                                   gCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTg                                                                            <  1:870033/143‑1 (MQ=35)

                                                                       aagatcgtctaggggATGAGAGACGATCTTCAGCCCGATACAGATTACACCAGAACGCAGAAGCGGTCTGATGAACCAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAAc                                                                        <  2:1010453/130‑1 (MQ=11)

                                                                       aaGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGGAAc                                                                        >  1:266587/1‑143 (MQ=25)

                                                                         gATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGc                                                                      <  2:969986/143‑1 (MQ=34)

                                                                          aTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGcc                                                                     <  1:1091684/143‑1 (MQ=33)

                                                                             ttttGGCGGACGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTa                                                                  <  1:600494/143‑1 (MQ=17)

                                                                              tttGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAg                                                                 >  2:487220/1‑143 (MQ=32)

                                                                                 ggCGGATGGGAGAGGATTTTCAGCCGGAGACAGATTAAATCAGAACGCGGAAGCGGTCTGATGAAACAGAAGTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAgcgc                                                              <  2:252055/143‑1 (MQ=11)

                                                                                 ggCGGATGAGAGAGGATTTTCAGCGTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCTGTAgcgc                                                              <  2:918578/143‑1 (MQ=12)

                                                                                 ggCGGATGAGAGAAGATGTTCAGCGTGATACAGATTAAATCAGACCGCATGAGCGGTCTGATGAAACAGAAGTCGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAgcgc                                                              <  2:770436/143‑1 (MQ=11)

                                                                                   ctgATGAGATAAGGGTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCg                                                            <  2:639823/141‑1 (MQ=12)

                                                                                   cGGATGGGCGAATATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGCCCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCg                                                            <  2:639888/143‑1 (MQ=255)

                                                                                    ggATGAGAGAAGATTTTCAGCCTGATACAGATTAGATCAGAACGCAGAAGTGGTCTGATGAAACAGAATTGGCGTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGa                                                           <  2:82044/143‑1 (MQ=255)

                                                                                    ggATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGa                                                           <  1:390576/143‑1 (MQ=32)

                                                                                    ggATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATAACGAACACAGAAGTGAAACGCCGTAGCGCAGa                                                           >  1:356762/1‑143 (MQ=255)

                                                                                         agagcgttttgtCAGCCTGATACAGATTAATTCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTa                                                      <  2:1168521/132‑1 (MQ=255)

                                                                                          gagaAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAg                                                     >  1:950761/1‑143 (MQ=32)

                                                                                             aagaTTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAGACGCCGTAGCGCCGGCGGTAgtgt                                                  >  1:47949/1‑143 (MQ=12)

                                                                                             aagaTTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAgtgt                                                  >  1:677598/1‑143 (MQ=32)

                                                                                             aagaTTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAgtgt                                                  >  2:690763/1‑143 (MQ=32)

                                                                                                attttatgtttGATTCAGATTGAATCAGAGAGAAGAAGCGGGCGGATGAAACAGAAGGGGCGGGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTggg                                               <  1:435243/133‑1 (MQ=11)

                                                                                                aTTTTAAGCCTGATACAGATTAAATCAGAACGCAGAAGTTGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTggg                                               <  1:60774/143‑1 (MQ=12)

                                                                                                   ttCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACGCAGAAGCGACACGCCGGAGCGCCGACggcccagcgggggc                                            >  2:755004/1‑131 (MQ=11)

                                                                                                       gCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGCCTTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCACATGCCGAAGCCAGCAGTGAAACGACGTAGCGCCGATGGGAGTGTCGGGGCTccc                                        >  2:88822/1‑143 (MQ=11)

                                                                                                         cTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCa                                      <  1:1015013/143‑1 (MQ=32)

                                                                                                          tGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGGAGGGTGGGGTGTCCCCac                                     >  1:257952/1‑142 (MQ=12)

                                                                                                                aGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGCCGTGTCAGTTCTCCCCATGCgaga                               >  2:214753/1‑143 (MQ=11)

                                                                                                                 gATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGagag                              >  1:1176977/1‑143 (MQ=32)

                                                                                                                   ttAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTa                            >  1:14897/1‑143 (MQ=32)

                                                                                                                     aagtgaGAACGCGGAAGCGGTCTGAGGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCCCCCCATGCGAGAGTAgg                          <  2:594258/138‑1 (MQ=11)

                                                                                                                       aTCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGa                        >  1:419714/1‑143 (MQ=32)

                                                                                                                        tCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGaa                       <  1:962237/143‑1 (MQ=32)

                                                                                                                        tCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGaa                       >  1:48482/1‑143 (MQ=32)

                                                                                                                        gcAGAGCGCGGAAGCGGTCGGATGAAACAGAATCTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGGCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGaa                       <  2:37277/142‑1 (MQ=11)

                                                                                                                             aCGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGACGTGAAACGCCGTAGCGCCGAAGGTAGTGTGGGGTCTCCCCATGCGAGAGTAAGGGACTGcc                  >  1:907531/1‑143 (MQ=255)

                                                                                                                                 aGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGc              <  1:98357/143‑1 (MQ=32)

                                                                                                                                  gAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGGAGGGAACCGCCAgggg             >  2:838048/1‑141 (MQ=12)

                                                                                                                                     gCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGACACGCCGTAGCGCCGAGGGTAGTGTGGGGGCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCa          >  1:923564/1‑143 (MQ=12)

                                                                                                                                     gCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGCTGGTACTGTGGGCTCTCCCCAGGCCAGAGCAGGGAACGGcagggacccg          >  1:567980/1‑134 (MQ=11)

                                                                                                                                     gCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGGCTCCCCATGCGAGAGTAGGGAACTGACAGGCCTCa          >  1:210231/1‑143 (MQ=12)

                                                                                                                                       ggTCTGATGAAACGGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCaaa        <  1:61551/143‑1 (MQ=17)

                                                                                                                                       ggTCTGATGAAACAGAATTTGCCGGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCaaa        <  2:933102/143‑1 (MQ=17)

                                                                                                                                          cTGATGATACATAATTTGCCTGGCGGCTGTAGCGTGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTa     <  2:441320/143‑1 (MQ=255)

                                                                                                                                           tgatgcAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAGCGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTaa    <  2:479628/143‑1 (MQ=17)

                                                                                                                                           tgatgaAACAGAATTTGCCTGGCGGCCGCAGCTCGGTGGTCCCCCCTGACCCCATGCCGAACTCAGACGTGAAACGCCGTAGCCGCGATGGTAGTGTGCGGTCTCCACATGCTACACTACAGACCTGCCAGGCaggagatgaa    >  2:388100/1‑134 (MQ=11)

                                                                                                                                            gatgaATCAGAACTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAGCCCCTGTGGTTCTTGGTTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAAg   <  1:193676/143‑1 (MQ=11)

                                                                                                                                            gatgaAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTTAAACGCCGTAGCGCCGATGGTAGTGTGGAGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAAg   <  2:285054/143‑1 (MQ=17)

                                                                                                                                            gatgaAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTCGGGAACTGCCAGGCATCAAATTCAg   >  1:1249947/1‑143 (MQ=17)

                                                                                                                                             atgaAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAAGc  >  1:962731/1‑143 (MQ=32)

                                                                                                                                             atgaAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGCGAACTGCCAGGCATCAAATTAAGc  >  1:846158/1‑143 (MQ=17)

                                                                                                                                             atgaAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGAAGGGAACTGCCAGGCATCAAATTAAGc  >  2:93222/1‑143 (MQ=17)

                                                                                                                                             atgaAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGAAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAAGc  >  1:1336646/1‑143 (MQ=17)

GGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAAGC  >  NC_000913/3946545‑3946828

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 8 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.