| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1299667 = | NA (NA) | 5 (0.080) | 5/280 | 8.2 | NA | intergenic (+422/‑1515) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1299703 = | NA (NA) | intergenic (+458/‑1479) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
ACAGAGCATCTTCCATCGCGCCATCGCTCAGGTTGTACCAATGCTGCATGCAGTGAATGCGTAGCATGGTTTCCAGCGGATAAGGTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1299810‑1299667‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccCCAAGGCTGGTAATGGCCGGCGACCTTATCCGCTGGAAACCATGCTACGCATTCACTGCATGCAGCATTGGTACAACCTGAGCGATGGCGCGATGGAAGATGCTCTGTACGAAATCGCCTCCATGCGTCTGTTTGCCCGGTT > NC_000913/1299703‑1299844 gCAGCGCCTCTTCCATCGCGGCCTCGCGCAGGTTGTACCAAGGCGGCATGCAGTGCATGCGTAGCATGGCTTACAGCGGATAAGGTCGCTGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGC < 1:723598/142‑1atacAGCAGCTTCCATCGCGCCATCGCTCAGGTTGTACCAATGCTGCATGCAGTGAATGCGTAGCATGGTTTCCAGCGGATAAGGTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGC < 1:422330/139‑1agagggcggCTTCGATCGCGCCATCGCTCAGGTTGTACCAATGCTGCATGCAGTGAATGCGTAGCATGGTTTCCAGCGGATAAGGTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGC < 1:783441/134‑1ACAGAGCATCTTTCATCGCGCCATCGCTCAGGTTGTACCAATGCTGCATGCAGTGAATGCGTAGCATGGTTTCCAGCGGATAAGGTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGC < 1:576699/143‑1ACAGAGCATCTCCCATCGCGCCATCGCTCAGGTTGTACCAATGCTGCATGCAGTGAATGCGTAGCATGGTTTCCAGCGGATAAGGTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGC < 2:587018/143‑1 CAGAGCATCTTCCATCGCGCCATCGCTCAGGTTGTCCCAATGCTGCATGCAGTGAATGCGTACCATGGTTTCCAGCGGATAAGGTCGCCGGCCATTACCAGCCTGGGGGCAACACGGCTCGACGACTCCCACCATGCTTTGCC > 2:898017/1‑143 CAGAGCATCTTCCATCGCGCCATCGCTCAGGTTGTACCAATGCTGCATGCAGTGAATGCGTAGCATGGTTTCCAGCGGATAAGGTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCC > 1:139147/1‑143 CAGAGCATCTTCCATCGCGCCATCGCTCAGGTTGTACCAATGCTGCATGCAGTGAATGCGTAGCATGGTTTCCAGCGGATAAGGTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATCACTTCCACCATGTCTTGCC > 1:1036464/1‑143 CAGAGCATCTTCCATCGCGCCATCGCTCAGGTTGTACCAATGATGCATGCAGTGAATGCGTAGCATGGTTTCCATCGGATAAGGTCGCCAGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGGTTGGCC > 1:506568/1‑143 CAGAGCATCTTCCATCGCGCCATCGCTCAGGTTGTACCAATACTGCATGCAGTGAATGCGTAGCATGGTTTCCAGCGGATAAGGTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCC < 2:974206/143‑1 CAGAGCATCTTCCATCGCGCCATCGCGCAGGTTGTACCAATGCTGCATGCAGTGAATGCGTAGCATGGTTTCCAGCGGATAAGGTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCC < 2:773359/143‑1 CAGAGCATCTTCCATCGCGCCAGCGCTCAGGTTGTACCAAGGCTGCATGCAGTGAATGCGTAGCATGGTTTCCAGCGGATAAGGTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCC < 1:352385/143‑1 AGAGCATCTTCCATCGCGCCATCGCTCAGGTTGTACCAATGCGGCATGCAGTGAATGCGTAGCATGGTTTCCAGCGGATAAGGTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCC > 2:1044532/1‑143 GCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCCCAAGGCTGGTAATGGCCGGCGACCTTATCCGCTGGAAACCATGCTACGCATTCACTGCATGCAGCATTGATACAACCTACGCCAGGTCACGATAGAAGA > 1:876146/1‑143 CTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCCCAAGGCTGGTAATGGCCGGCGACCTTATCCGCTGGAAACCATGCTACGCATTCACTGCATGCCGCATTGGTACAACCTGAGCGATGGCGCGATGGAAGATG > 2:826586/1‑143 gcggcccgttgtcCCCCTAGGCTGGTGACGGCCGGCGACCTTATCCCCTGGAGACCATGCTACGCCTTCACTGCATGCAGCATTGGTACACCCTGAGCGATGGCGCGATGGAAGATGCTCTGTACGAAATCGCCTCCATGCGT < 1:717085/130‑1 ccGTTTGGCCGCAAGGCTGGTGATGGCCGGCGACCTTATCCGCTGGAAACCATGCTAGGCATTCACTGCATGCAGCATTGGTACAACCTGAGCGATGGCGCGATGGAAGATGCTCTGTACGAAATCGCCTCCATGCGTCTGTT < 1:472377/141‑1 TGCCCCAAGGCGGGTAATGGCCGGCGACCTTATCCGCTGGAAACCATGCTACGCATTCACTGCATGCAGCATTGGTACAACCTGAGCGATGGCGCGATGGAAGATGCTCTGTACGAAATCGCCTCCATGCGTCTGTTTGCCCG < 1:399244/143‑1 CCCCCAGGCTGGTAAGGGCCGGCGACCTTATCCGCTGGAAACCATGCTACGCATTCACTGCATGCAGCATTGGTACAACCTGAGCGATGGCGCGATGGAAGATGCTCTGTACGAAATCGCCTCCATGCGTCTGTTTGCCCGGT < 2:290068/143‑1 CCCCAGGGCTGGTAATGGCCGGCGACCTCATATACTGGCAACCATGCGACGCATTCACTGCATGCAGCATTGGTACAACCTGAGCGATGGCGCGATGGAAGATGCTCTGTACGAAATCGCCTCCATGCGTCTGTTTGCCCGGT < 2:741700/143‑1 CCCCAAGGCTGGTAATGGCCGGCGACCTTATCCGCTGGAAACCATGCTACGCATTCACTGCATGCAGCATTGGTACAACCTGAGCGATGGCGCGATGGAAGATGCTCTGTACGAAATCGCCTCCGTGCGTCTGTTTGCTCGGT > 2:132479/1‑143 CCCCAACGCTGGTAATGGCCGGCGACCTTATCCGCTGGAAACCATGCTACGCATTCACTGCATGCAGCATTGGTACAACCTGAGCGCTGGCGCGATGGAAGATGCTCTGTACGAAATCGCCTCCATGCGTCTGTTTGCCCGGT < 1:238250/143‑1 CCCCAACGCGGGCAAGCGCCCGCGACCTTATCCGCTGGAAACCATGCTACGCATTCCCTGCAGGCAGCATGGGTACAACCTGAGCGATGGCGCGATGGAAGGTGCTCTGTACGAAATCGCCCCCATGCGTCTGTTTGCCCGGT < 1:699394/143‑1 CCCAAGGCTGGTAATGGCCGGCGACCTTATCCGCTGGAAACCATGCTACGCATTCACTGCATGCAGCATTGGTACAACCTGCGCGTTGGCGAGATAGCATGTGCTCTGTAGGAAATCGCCTCCATGCGTCTGTTTGCCCGGTT > 2:405556/1‑143 CCCAAGGCTGGTAATGGCCGGCGACCTTATCCGCTGGAAACCATGCTACGCATTCACTGCATGCAGCATTGGTACAACCTGAGCGATGGCGCGCTGGAAGATGCGCTGTACCAAATCGCCTCCATGCGCCTGGTTGCCCGGTc > 1:1015851/1‑142 CCCAAGGCTGGTAATGGCCGGCGACCTTATCCGCTGGAAACCATGCTACGCATTCACTGCATGCAGCATTGGTACAACCTGAGCGATGGCGCGATGGAAGATGCTCTGTCCGAAATCGCCTCCATCCGTCTGTTTGCCCGGTT > 1:758623/1‑143 CCCAAGGCTGGTAATGGCCGGCGACCTTATCCGCTGGAAACCATGCTACGCATTCACTGCATGCAGCATTGGTACAACCTGAGCGATGGCGCGATGGAAGATGCTCTGTACGAAATCGCCTCCCTGCGTCTGTTTGCCCGGTT > 2:113073/1‑143 CCCAAGGCTGGTAATGGCCGGCGACCTTATCCGCTGGAAACCATGCTACGCATTCACTGCATGCAGCATTGGTACAACCTGAGCGATGGCGCGATGGAAGATGCTCTGTACGAAATCGCCTCCATGCGTCTGTTTGCCgcgtt > 2:1078181/1‑138 CCCAAGGCTGGTAATGGCCGGCGACCTTATCCGCTGGAAACCATGCTACGCATTCACTGCATGCAGCATTGGTACAACCTGAGCGATGGCGCGATGGAAGATGCTCTGTACGAAATCGCCTCCATGCGTCTGTTTGCCCGGgt > 2:172664/1‑141 CCCAAGGCTGGTAATGGCCGGCGACCTTATCCGCTGGAAACCATGCTACGCATTCACTGCATGCAGCATTGGTACAACCTGAGCGATGGCGCGATGGAAGATGCTCTGTACGAAATCGCCTCCATGCGTCTGTTTGCCCGGct > 2:991740/1‑141 CCCAAGGCTGGTAATGGCCGGCGACCTTATCCGCTGGAAACCATGCTACGCATTCACTGCATGCAGCATTGGTACAACCTGAGCGATGGCGCGATGGAAGATGCTCTGTACGAAATCGCCTCCATGCGTCTGTTTGCCCGGTT > 2:320799/1‑143 CCCAAGGCTGGTAATGGCCGGCGACCTTATCCGCTGGAAACCATGCTACGCATTCACTGCATGCAGCATTGGTACAACCTGAGCGATGGCGCGATGGAAGATGCTCTGTACGAAATCGCCTCCATGCGTCTGTTTGCCCGGTT > 2:979052/1‑143 CCCAAGGCTGGTAATGGCCGGCGACCTTATCCGCTGGAAACCATGCTACGCATTCACTGCATGCAGCATTGGTACAACCTGAGCGATGGCGCGATGGAAGATGCTCTGTACGAAATCGCCTCAATGCGTATGTTTGCCCGGgt > 2:801344/1‑141 CCCAAGGCTGGTAATGGCCGGCGACCTTATCCGCTGGAAACCATGCTACGCATTCACTGCATGCAGCATTGGTACAACCTGAGCGATGGCGCGACGGAAGATGCTCTGTACGAAATCGCCTCCATGCGTCTGCTTGCCCGGTT > 1:762101/1‑143 CCCAAGGCTGGTAATGGCCGGCGACCTTATCCGCTGGAAACCATGCTACGCATTCACTGCATGCAGCATTGGCACAACCTGAGCGATGGCGCGAAGGGAGATGCTCTGCACGAAATCGCCTCCCTGCGTCGGTTTGCCCAGTT > 1:963044/1‑143 CCCAAGGCTGGTAATGGCCGGCGACCTTATCCGCTGGAAACCATGCTACGCATTCACTGCATGCAGCAGTGGTACAACCTGAGCGATGGCGCGGTGGAAGATGCTGTGTACGAAATCGCCTCCATGCGTCTGTTTGCCCGGgt > 2:333549/1‑141 CCCAAGGCTGGTAATGGCCGGCGACCTTATCCGCTCGCAACCATGCTACGCATTCACTGCCTGCAGCATTGGTACAACCTGAGCGATGGCGCGATGGACGATCCTCTGTACGAAATCGCCTCCCTGCGTCTGATTGCCCGGTT > 1:124428/1‑143 CCCAAGGCTGGTAATGGCCGGCGACCTTATCCGATGGAAACCATGCTACGCATTCACTGCATGCAGCATTGGTAAAACCTGAGCGATGGCGCGATGGAAGATGCTCTGTACGAAGACGGCTCCATGCGTCTGTCTGCCCGGag > 1:174148/1‑141 ACAGAGCATCTTCCATCGCGCCATCGCTCAGGTTGTACCAATGCTGCATGCAGTGAATGCGTAGCATGGTTTCCAGCGGATAAGGTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1299810‑1299667‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccCCAAGGCTGGTAATGGCCGGCGACCTTATCCGCTGGAAACCATGCTACGCATTCACTGCATGCAGCATTGGTACAACCTGAGCGATGGCGCGATGGAAGATGCTCTGTACGAAATCGCCTCCATGCGTCTGTTTGCCCGGTT > NC_000913/1299703‑1299844 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |