New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3941884	10 (0.160)	8 (0.130)	5/280	8.2	44.8%	noncoding (78/1542 nt)	rrsC	16S ribosomal RNA of rrnC operon
	?	NC_000913	= 4035619	NA (NA)					noncoding (90/1542 nt)	rrsA	16S ribosomal RNA of rrnA operon
Rejected: Coverage evenness skew score above cutoff.

GAGCATCAAACTTTTAAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAACAGGAAACAGCTTGCTGTTTCGCTGACGAGTGGCGGACGGGTGAGTAATGTCTGGGAAACTGCCTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTTCGGGCCT  >  NC_000913/3941792‑3942022                                                                                             |                                                                                                                                           gAGCATCAAACTTTTAAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAACAGGAAGCAGCTTGCTGCTTCGCTGACGAGTGGCGGACGCGCGCCGAATGTCTgcg                                                                                          >  1:317324/1‑141 (MQ=11)                              gagcATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAACAGGAAACAGCTTGCTGTTTCGCTGACGAGTGGCGGACGGGTGAGTAATGTCTGGGAAACTGCCTGATGGAGGGGGATAactact                                                             <  1:233127/140‑1 (MQ=1)                                             tGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAACAGGAAACAGCTTGCTGTTTCGCTGACGAGTGGCGGACGGGTGAGTAATGTCTGGGAAACTGCCTGATGGAGGGGGCCAGCTACGGGCGACGGTGGcgga                                              >  2:492873/1‑140 (MQ=1)                                                                          aagttgaggggTAACAGGAAACAGCTGGCTGTTGCGCGGACGAGTGGCGGACGGGTGAGTAATGTCTGGGAAACTGCCTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAgg                 <  1:398740/134‑1 (MQ=1)                                                                               caaaggaaaCAGTAAACAGCTGGTTGTTTCGCTGACGAGTGGTGGACGGGTGTGTAATGTCTGGGAAACTTCCTGATGTAGGGGGATAACTACTGGAAACGGGAGCTACCACCGCATAACGTCGCAAGACCAAAGAGGGGGAc            <  1:934510/136‑1 (MQ=1)                                                                                    ggaaCATGACACAGCTTGCTGTTGCGCTGACGAGTGGCGGACAGGTGAGTAATGTCTGGGAAACTGCCTGATGGAGGGGGATAACTACTAGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTTCg       <  1:294051/141‑1 (MQ=11)                                                                                    gTAACAGTAGACGGCCTGCGGTTGCGCTGACGAGTGGCGGACGGGTGAGGAATGTCTGGGAAACTGCCTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTTCg       <  2:799/143‑1 (MQ=11)                                                                                     ttaCATGACACCGCTTGCTGTCTCGATGACGAGTCGCGGAGGGGTGAGTTATGTCGGGGAAACTGCCTGATGTAGGGGGATAACTACTGGAAACGGGAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTTCgg      <  1:820486/141‑1 (MQ=11)                                                                                     aacaaacaaaCAGCTTGCTGTACCGAGGAAGAGTGGCGGACGGGTGAGTAATGTCTGGGAAACTGCCTTATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTTCgg      <  2:194446/136‑1 (MQ=11)                                                                                        agcgAAACAGCAAGCTGTTTC‑CTGACGAGTGGCGGACGGGTGAGTAATGTCTGGGAAACTGCCTGATGGAGGGGGATAACTACTGAATGTAAATGCTAGGACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTTCGGGCct  >  2:797388/4‑143 (MQ=11)                                                                                             |                                                                                                                                           GAGCATCAAACTTTTAAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAACAGGAAACAGCTTGCTGTTTCGCTGACGAGTGGCGGACGGGTGAGTAATGTCTGGGAAACTGCCTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTTCGGGCCT  >  NC_000913/3941792‑3942022

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.