New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 223862	7 (0.110)	8 (0.130)	5/280	8.2	53.7%	noncoding (92/1542 nt)	rrsH	16S ribosomal RNA of rrnH operon
	?	NC_000913	3428685 =	NA (NA)					noncoding (76/1542 nt)	rrsD	16S ribosomal RNA of rrnD operon
Rejected: Coverage evenness skew score above cutoff.

GAGGCCCGAGGGTCCCCCTCTTTGGTCTTGCGACGTTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAACAGCAAGCTGTTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAGCCATGATCAAACTCTTCAATTTAAAAGTTTGATGCTCAAAGAATTAAACTTCGTAATGAATTACGTGTTCA  >  NC_000913/3428544‑3428809                                                                                                                                              |                                                                                                                             gagGCCCGAGGGTCCCCCTCTTTGGTCTTGCGACGTTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAACAGCTTGCTGTTTcg                                                                                                                             <  2:720438/143‑2 (MQ=12)  ggccccGAGGGTCCCCCTCTTTGGTCTTGCGACGTTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAACAGCAAGCTGTTTCCt                                                                                                                            <  1:1085615/140‑1 (MQ=17)    gCCCGAGGGTCCCCCTCTTTGGTCTTGCGACGTTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAG‑GAAACAGCTTGCTGTTTcgctga                                                                                                                         <  2:958774/143‑6 (MQ=11)    ccccGAGGGTCCCCCTCTTTGGTCTTGCGACGTTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAG‑GAAACAGCTTGCTGTTTcgctga                                                                                                                         <  2:239031/142‑6 (MQ=11)                              ggtacggtgtGCGGTTTTAGCTGCCGTTTCCAGTAGTTAGCCCCCTCCATCAGGCCGTTTCCCAGACATTACTCCCCCGTCCGCCACTCGTCAGCGAAACAGCAAGCTGTTTCCTGTTACCGTTCGACTTGCATGTGTTAGGc                                                                                                <  1:854852/134‑1 (MQ=1)                                                                                                                            cgagataGCAAGCTGTTTCCTGTTCCCGTTCGACTGGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAGCCATGATCAAACTTTTCAATTTAAAAGTTTGCTGGTCTGGTGAGGAAACTTCGTCTTGTATTACGTGTTCa  <  1:1074582/137‑1 (MQ=1)                                                                                                                                              |                                                                                                                             GAGGCCCGAGGGTCCCCCTCTTTGGTCTTGCGACGTTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAACAGCAAGCTGTTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAGCCATGATCAAACTCTTCAATTTAAAAGTTTGATGCTCAAAGAATTAAACTTCGTAATGAATTACGTGTTCA  >  NC_000913/3428544‑3428809

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.