New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1207805	47 (0.750)	11 (0.200)	11/252	4.8	19.9%	coding (305/630 nt)	stfP	e14 prophage, uncharacterized protein
	?	NC_000913	= 1209602	47 (0.840)					pseudogene (18/501 nt)	stfE	pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATG‑GCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAAT  >  NC_000913/1209464‑1209744                                                                                                                                           |                                                                                                                                                aGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCtt                                                                                                                                             <  2:1060956/143‑1 (MQ=255)   gCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGACTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTtct                                                                                                                                           >  2:554886/1‑143 (MQ=255)      atttatttGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTccc                                                                                                                                        >  1:609570/1‑143 (MQ=255)          gttggTCGGATAAGCCTTTGCGAGTTCCGGCTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTCATGCAGAGCCTTCTCCCAAAc                                                                                                                                    <  1:467738/139‑1 (MQ=255)             tGTCGGATAAGCCCTCGCCAGTTCCGGGTATTCTTCAGCAGAAACAGCCGCACCATTGCATTTCAGCCAGCATGTTGGCGGAGTGGCTGAAGGACACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCaa                                                                                                                                 <  2:894946/143‑1 (MQ=255)              gTCGGATAAGTCTTTGCCAGTGCCGGGAACGCTGCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAAc                                                                                                                                <  2:521165/143‑1 (MQ=255)              gTCGGATAAGCCTTTGCCCGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGCTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAAc                                                                                                                                <  1:462999/143‑1 (MQ=255)               tCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGCAACGCGTCACCAACAGGTAATGCAGAGCCTTCTcccaacccaagg                                                                                                                               >  1:772544/1‑141 (MQ=255)                cGGGTAAGCCTTTGCCAGTTCCTGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATGTGAGCCAGCCGGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGt                                                                                                                              <  1:126955/143‑1 (MQ=255)                    tAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTAt                                                                                                                          <  2:1011258/143‑1 (MQ=255)                     aaGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTACTCACAAACCAAAGtgtgtg                                                                                                                         >  1:644345/1‑138 (MQ=255)                       gCCTTTGCCAGTTCTGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAAGGttttcgag                                                                                                                       <  1:196232/143‑6 (MQ=255)                       gCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAAGGttttcgag                                                                                                                       >  2:297793/1‑138 (MQ=255)                       gCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGaa                                                                                                                       >  2:290253/1‑143 (MQ=255)                       gCCTTTGCCAGTTCCGGGTAGTCCTCCGCAGAAAAAGCGGCACCATTGCATTTCCGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGaa                                                                                                                       <  1:222454/143‑1 (MQ=255)                             gCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATgaa                                                                                                                 <  2:395051/143‑1 (MQ=255)                                  ttCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAAt                                                                                                            >  2:137795/1‑143 (MQ=255)                                     cGGGTATTCTTCAGCAGAAAAAGCGGCGCCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGAAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAAc                                                                                                         <  2:1026995/143‑1 (MQ=255)                                        gtcttcaacaccagAAAAAGCGGCACCAATGCAGTGCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAg                                                                                                      <  2:497770/132‑1 (MQ=255)                                            tcttcAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCaaa                                                                                                  >  1:189355/1‑143 (MQ=255)                                            tcttcAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTAGGCGGCGTAGCTGAACGCCACGGAACAGGGACAACAACAGGTAATACAGAGCACACACCGAAAACAACGGTCATCAAAAGGAAGAAATAaaaaaccac                                                                                                  >  1:769520/1‑138 (MQ=255)                                             cttcAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCGAGACCAACGTTTATGAAAATGAAGAACTAACAAGAAAAt                                                                                                 >  2:187874/1‑143 (MQ=255)                                              ttcAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCCAACCACCGTTTATGAAAATCAAGAACTACAAAGCAAAta                                                                                                >  1:363528/1‑142 (MQ=255)                                              ttcAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAATCCAACGTTTATGAAAATGAAGAAATAACAAGCAAATg                                                                                                <  2:808731/143‑1 (MQ=255)                                                        aaaGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATG‑GCATCATTcc                                                                                     >  1:218223/1‑143 (MQ=255)                                                        aaaGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGACACGGTAACTGGAGGCCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATG‑GCATCATTcc                                                                                     >  2:1039275/1‑143 (MQ=255)                                                          aGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATG‑GCATCATTCCTg                                                                                   <  1:799486/143‑1 (MQ=255)                                                                aCCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATG‑GCATCATTCCTGCTTTTa                                                                             >  2:222613/1‑143 (MQ=255)                                                                         tttCAGCCAGCGTGTTGGGCGAGCGGCTGAAGGCCACGGAACCGGGACACCAACATGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATG‑GCATCATTCCTGCTTTTACCAGGGGGa                                                                    <  1:1045175/143‑1 (MQ=255)                                                                            cagccagcCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATG‑GCATCATTCCTGCTTTTACCAGGGGGAttg                                                                 >  2:141150/1‑142 (MQ=255)                                                                               ccagccTGTTGGCGGAGTGGCTGAAGGCCACGGACCCGGGACACCAACAGGGAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATG‑GCATCATTCCTGCTTTTACCAGGGGGATTTAAc                                                              <  1:481623/143‑1 (MQ=255)                                                                               ccagccTGGTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATG‑GCATCATTCCTGCTTTTACCAGGGGGATTTAAc                                                              <  2:160303/143‑1 (MQ=255)                                                                                 agccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCACCGTTTATGAAAATGAAGAAATAACAAGCAAATG‑GCATCATTCCTGCGTTTACCAGGGGGATTTAACAt                                                            >  2:542381/1‑143 (MQ=255)                                                                                  gccTGTTGGCGGATTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCATATG‑GCATCATTCCTGCTTTTACCAGGGGGATTTAACATg                                                           <  1:663254/143‑1 (MQ=255)                                                                                     tGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATG‑GCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCtt                                                        >  1:892083/1‑143 (MQ=255)                                                                                                  gCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGGTTATGAAAATGAAGAAATAACAAGCAAATG‑GCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGtcc                                           >  2:702996/1‑141 (MQ=255)                                                                                                   cTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAACGAAGAAATAACAAGCAAATG‑GCATCATTCCTGCTTTAACCAGGGGGATTTAACATGATTATTGGCTATGTAcg                                          >  2:56543/1‑143 (MQ=255)                                                                                                    tGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCACACCAACGTTTATGAAAATGAAGAAATAACAGGCAAATG‑GCATCATTCCTGCTCTTACCAGGGGGATTTAACATGCTTATTGGCTATGTAcgc                                         >  2:235180/1‑143 (MQ=255)                                                                                                         gCCACGGAACCGGTACACCACCAGGTAATGCACAGCCTCCTCCCAAACCAACATCTATCGACCTG‑AGAAGAGAGCGGCCAATGAATATCAGATCTGCTTTTACCAGGGGGATTTAGCATGCTTATTGGCTATGTACGCGTATc                                    <  1:485763/143‑1 (MQ=255)                                                                                                         gCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCCTCTCCCAAACCAACGTATATGAAAACGAAGAAACAACAAGCAAATG‑GCATCACTCCTGCTTTTACCAGGGGGCTCGAACAGGGCCATTGGCTCTGTGCTCGTATc                                    >  1:917160/1‑143 (MQ=255)                                                                                                           cACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATG‑GCATCATTCCTGCTTTTACAAGGGGGATTTAACATGCTCATTGGCTATGTACGCGTATcaa                                  >  1:140811/1‑143 (MQ=255)                                                                                                            aCGTAACCGGGAGACCACCAGGTAATGCAGAGCCTTCTCCCAAACCATCGTTTATGAAAATGAAGAAATAACAAGCAAATG‑GCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATcaac                                 <  2:180736/143‑1 (MQ=255)                                                                                                                aaCCGGGGCACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAGATAACAAGCAAATG‑GCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAAt                             <  1:700317/143‑1 (MQ=255)                                                                                                                aaCCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATG‑GCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACCAAt                             >  1:837018/1‑143 (MQ=255)                                                                                                                  ccGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTAGGAAAATGAAGAAATAACAAGCAAATG‑GCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGa                           >  2:416374/1‑143 (MQ=255)                                                                                                                    gggACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTGTATGAAAATGAAGAAATAACAAGCAAATG‑GCAGCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTAAGCGTAGCAACAAAtcagc                         >  1:869859/1‑139 (MQ=255)                                                                                                                     tgACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATG‑GCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCa                        <  1:301764/142‑1 (MQ=255)                                                                                                                           cAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATG‑GCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAacac                  >  2:446386/1‑143 (MQ=255)                                                                                                                            aaaatgTAATGACGACCATTCCCCCAAACCTACGTTTATGACAATGAAGAAATAACAAGCAAATG‑GCATCATTCCTGCTTTTACCACGTGGATTTAACATGCTTATTGGCTATCTACGCGTATCAACAAATGACCAGAAcaca                 <  1:150276/138‑1 (MQ=255)                                                                                                                            aaCAGGTAATGCAGAGCCTTCTCCCAAAACAACGTTTATGAAAATGAAGAAATAACAAGCAACTG‑GCATCATTACTGCTTTTACCAGGGGGATTTAACATGCTCATTGGCTATGTACGCGTATCAACAAATgtcgagtagtga                 >  1:997966/1‑132 (MQ=255)                                                                                                                                    aTGCAGAGCCTGCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATG‑GCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACa         <  1:936800/143‑1 (MQ=255)                                                                                                                                     tggagagCCTTCTCCCAAACCAGCGTTTATGAAAATGAAGGAAGAACAAGCAAATG‑GCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACaa        <  1:66967/140‑1 (MQ=255)                                                                                                                                        agagCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATG‑GCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACCACGt     >  2:762225/1‑143 (MQ=255)                                                                                                                                        agagCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATG‑GCATCATTCCTGCATTTACCAGGGGGAATTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGAACAGAACACAGATCtcacacgt     >  1:896263/1‑136 (MQ=255)                                                                                                                                           gCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATG‑GCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAAt  <  1:222613/143‑1 (MQ=255)                                                                                                                                           |                                                                                                                                                AGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATG‑GCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAAT  >  NC_000913/1209464‑1209744

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.