New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3941882	NA (NA)	8 (0.130)	5/280	8.2	31.1%	noncoding (76/1542 nt)	rrsC	16S ribosomal RNA of rrnC operon
	?	NC_000913	= 4208237	18 (0.290)					noncoding (92/1542 nt)	rrsE	16S ribosomal RNA of rrnE operon
Rejected: Coverage evenness skew score above cutoff.

AGTGAACACGTAATTCATTACGAAGTTTAATTCTTTGAGCATCAAACTTTTAAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAACAGGAAGAAGCTTGCTTCTTTGCTGACGAGTGGCGGACGGG  >  NC_000913/4208095‑4208258                                                                                                                                               |                      agTGAACACGTAATTCATTACGAAGTTTAATTCTTTGAGCATCAAACTTTTAAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAACAGGAAGAAGCTTGcttctt                       <  1:31681/143‑1 (MQ=32)  gTGAACACGTTATTCATTACGAAGTTTAATTCTTTGAGCATAAAACTTTTAAATTGAAGAGTTTGATCATGGCTCAGATTGCACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAACAGGAAGAAGCTTGCTTCttt                      <  1:886591/143‑1 (MQ=12)  gTGAACACGTAATGCATTACGAAGTTTAATTCTTTGAGCATCAAACTTTTAAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAACAGGAAGAAGCTTGCTTCttt                      <  2:718347/143‑1 (MQ=17)     aaCACGTAATTCATTACGAAGTTTAATTCTTTGAGCATCAAACTTTTAAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAACAGGAAGAAGCTTGCTTCTTTGCt                   <  2:193338/143‑1 (MQ=32)       cacGTAATTCATTACGAAGTTTAATTCTTTGAGCATCAAACTTTTAAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAACAGGAAGAAGCTTGCTTCTTTGCTGa                 >  2:496743/1‑143 (MQ=32)        acGTAATTCATTACGACGTTTAATAGTGTGCTGATCAAACTTCTAAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAACAGGAAGAAGCTTGCTTCTTTGCTGAc                <  2:454329/143‑1 (MQ=11)        acGTAATTCATTACGAAGTTTAATTCTTTGAGCATCAAACTTTTAAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAACAGGAAGAAGCGTGCCTCTTTGCTGAc                >  1:533270/1‑143 (MQ=17)          gTAATTCATTACGAAGTTTAATTCTTTGAACATCAAACTTATAAATTGAAGAGTTTGATCATGGCTCAGATTGAACACTGGCGGCAGGCCTAACACATGCAAGTCGAACGATAACAGGAAGCAGCCCGCATCTTTACTGACGa              >  1:1021144/1‑143 (MQ=11)            aaTTCATTACGAAGTTTAATTCTTTGAGCATCAAACTTTTAAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAGGTCGAACGGTAACAGGAAGAAGCTTGCTTCTTTGCTGACGAGt            >  2:513485/1‑143 (MQ=17)            aaTTCATTACGAAGTTTAATTCTTTGAGCATCAAACTTTTAAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAACAGGAAGAAGCTTGCTTCTTTGCTGACGAGt            <  2:628506/143‑1 (MQ=32)             aTTCATTACGAAGTTTAATTCTTTGAGCATCAAACTTTTAAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAACAGGAAGAAGCCTGCTTCTTTGCTGACGCGTg           >  2:382892/1‑143 (MQ=17)              ttCATTACGAAGTTTAATTCTTTGAGCATCAAACTTTTAAATTGAAGAGTTTGATCATGGCTCAGAATGAACGCTGGCGGCAGGCCTACCACATGCAAGTCGAACGCTAACAGGCAGAAGCTTGCTTCTTCACTGCCGACTgg          >  1:968696/1‑143 (MQ=11)              ttCATTACGAAGGTTCATTCTTTGGGCATCAAACTTTTAAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAATTCGAACGGTAACAGGAAGAAGCTTGCTTCTTTGCTGACGAGTgg          <  1:310745/143‑1 (MQ=255)               tCATTGCGAAGTTTAGTTCTTTGAGCAGCAAACTTTTAAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGTGTCAGGCCTAACGCATGCAAGTCGAACGGTAACAGGAAGAAGCTTGCTTCTTTGCTGACGAGTGGc         <  1:487014/143‑1 (MQ=11)               tCATTACGAAGTTTAATTCTTTGAGCATCAAACTTTTAAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAACAGGAAGAAGCTTGCTTCTTTGCTGACGAGTGGc         <  2:479091/143‑1 (MQ=32)               tCATTACGAAGTTTAATTCTTTGAGCATCAAACTTTTAAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAACAGGAAGAAGCTTGCTTCTTTGCTGACGAGTGGc         <  2:480287/143‑1 (MQ=32)                  ttACGAAGTTTAATTCTTTGAGCATCAAACTTTTAAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAACAGGAAGACGCTTGCTTCTTAGCTGACGAGTGGCGGa      >  1:1090363/1‑143 (MQ=17)                   tACGAAGTTTAATTCTTTGAGCATCAAACTTTTAAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAACAGGAAGAAGCTTGCTTCTTTGCTGACGAGTGGCGGAc     >  2:556275/1‑143 (MQ=32)                     cGAAGTTTAATTCTTTGAGCATCAAACTTTTAAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAACAGGAAGAAGCTTGCTTCTTTGCTGACGAGTGGCGGACgg   <  1:405683/143‑1 (MQ=31)                      gAAGTTTGATTCTTAGAGCATCACGCGGGTAAAGTGAAGAGTTTGATAATGGCCCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAACAGGAAGAAGCTTGCTTCTTTGCTGACGAGTGGCGGACggg  <  1:221213/143‑1 (MQ=11)                                                                                                                                               |                      AGTGAACACGTAATTCATTACGAAGTTTAATTCTTTGAGCATCAAACTTTTAAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAACAGGAAGAAGCTTGCTTCTTTGCTGACGAGTGGCGGACGGG  >  NC_000913/4208095‑4208258

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.