New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	954845 =	48 (1.070)	3 (0.070)	3/270	6.5	6.3%	intergenic (‑379/+27)	focA/ycaO	formate channel/ribosomal protein S12 methylthiotransferase accessory factor
	?	NC_000913	954864 =	44 (1.030)					intergenic (‑398/+8)	focA/ycaO	formate channel/ribosomal protein S12 methylthiotransferase accessory factor
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TAACAATATCGATCGTATTTATTAAATACAAATTACCGATATTTAACCTTATAATTACAATTATTTTATTAATGCAAATATATGTAAAGCGGGGCATTAAAAAAACGCCCCGTAATATAACTCAGACTAATCATTAAGCCTACATTGCGTAGGCTATTTGATTTTATTTTGCCCAGAATGCTGCTTTGGCGCGCTGCAGCTTTTCGTAGGCCTTCAACAACGACTGATGTGCAGCAAACGCGTGCAGATCGCTATCTACCGGTTGCAGGCCGTAAAA  >  NC_000913/954709‑954985                                                                                                                                         |                                                                                                                                             tAACAATATCGATCGTATTTATTAAATACAAATTACCGATATTTAACCTTATAATTACAATTATTTTATTAATGCAAATATATGTAAAGCGGGGCATTAAAAAAACGCTCCGAAATATAACTCAGACTAAGCATTAAGCCTAc                                                                                                                                        >  1:620086/1‑143 (MQ=255)  aaCACTATCGATCGTATTTATTAAATACAAATTACCGATATTTAACCTTATAATTACAATTATTTTATTAATGCAAATATATGTAAAGCGGGGCATTAAAAAAACGCCCCGTAATATAACTCAGACTAATCATTAAGCCTACa                                                                                                                                       <  1:211971/143‑1 (MQ=255)  aaCAATATCGATCGTATTTATTAAATACAAATTACCGATATTTAACCTTATAATTACAATTATTTTATTAATGCAAATATATGTAAAGCGGGGCATTAAAAAAACGCCCCGTAATATAACTCAGACTAATCATTAAGCCTACa                                                                                                                                       <  2:415106/143‑1 (MQ=255)      atatCGATCGTATTTATTAAATACAAATTACCGATATTTAACCTTATAATTACAATTATTTTATTAATGCAAATATATGTAAAGCGGGGCATTAAAAAAACGCCCCGTAATATAACTCAGACTAATCATTAAGCCTACATTGc                                                                                                                                   <  1:580077/143‑1 (MQ=255)       tatCGATCGTATTTATTAAATACAAATTACCGATATTTAACCTTATAATTACAATTATTTTATTAATGCAAATATATGTAAAGCGGGGCATTAAAAAAACGCCCCGTAATATAACTCAGACTAATCATTAAGCCTACATTGCg                                                                                                                                  <  2:615515/143‑1 (MQ=255)           gatcgTATTTATTAAATACAAATTACCGATATTTAACCTTATAATTACAATTATTTTATTAATGCAAATATATGTAAAGCGGGGCATTAAAAAAACGCCCCGTAATATAACTCAGACTAATCATTAAGCCTACATTGCGTAgg                                                                                                                              <  2:34262/143‑1 (MQ=255)               gTATTTATTAAATACAAATTACCGATATTTAACCTTATAATTACAATTATTTTATTAATGCAAATATATGTAAAGCGGGGCCTTAAAAAAACGCCCCGTAATATAACTCAGACTAATCATCACGCCTACACTGCGAAGGCTAt                                                                                                                          >  1:631080/1‑143 (MQ=255)                 atttattAAATACAAATTACCGATATTTAACCTTATAATTACAATTATTTTATTAATGCAAATATATGTAAAGCGGGGCATTAAAAAAACGCCCCGTAATATAACTCAGACTAATCATTAAGCCTACATTTCGTAGGCTAttt                                                                                                                        >  2:487130/1‑143 (MQ=255)                       taAATACAAATTACCGATATTTAACCTTGTAATTACAATTATTTTATTAATGCAAATATATGTAAAGCGGGGCATTAAAAAAACGCCCCGTAATATAACTCAGACTAATCATTAAGCCTACATTGAGTAAGCTACTCGatttt                                                                                                                  >  2:769232/1‑143 (MQ=255)                       taAATACAAATTACCGATATTTAACCTTATAATTACAATTATTTTATTAATGCAAATATATGTAAAGCGGGGCATTAAAAAAACGCCCCGTAATATAACTCAGACTAATCATTAAGCCTACATTGCGTAGGCTAttt                                                                                                                        >  2:605400/1‑137 (MQ=255)                       taAATACAAATTACCGATATTTAACCTTATAATTACAATTATTTTATTAATGCAAATATATGTAAAGCGGGGCATTAAAAAAACGCCCCGTAATATAACTCAGACTAATCATTAAGCCTACATTGCGTAGGCTAttt                                                                                                                        <  1:605400/137‑1 (MQ=255)                       taAAGACAAATTACCGATATTTAACCTTATAATTACAATTATTTTATTAATGCAAATATATGTAAAGCGTGGCATTAAAAAAACGCCCCGTAATATAACTCAGACTAATCATTAAGCCTACATTGCGTAGGCTATTTGacttt                                                                                                                  <  2:319453/143‑1 (MQ=255)                       aaaaTACAAAATAGCGATATTTAACCTTATAATTACAATTATTTTATTAATGCAAATATATGTAAAGCGGGGCATTAAAAAAACGCCCCGTAATATAACTCAGACTAATCATTAAGCCTACATTGCGTAGGCTATTTGatttt                                                                                                                  <  1:580463/142‑1 (MQ=255)                            aCAAATTACCGATATTTAACCTTATAATTACAATTATTTTATTAATGCAAATATATGTAAAGCGGGGCATTAAAAAAACGCCCCGTAATATAACTCAGACTAATCATTAAGCCTACATTGCGTAGGCTATTTGattttatttt                                                                                                             >  1:55647/1‑143 (MQ=255)                                aTTACCGATATTTAACCTTATAATTACAATTATTTTATTAATGCAACTATTTGTAATGCGGGGCAGTAAAAAAACGCACCGTAATATAACTCAGACTAATCATTAAGCCTACATTGCGTAGGCTATTTGATTTTATTTTGccc                                                                                                         >  1:30315/1‑143 (MQ=255)                                 ttACCGATATTTAACCTTATAATTACAATTATTTTATTAATGCAAATATATGTAAAGCGGGGCATTAAAAAAACGCCCCGTAATATAACTCAGACTAATCATTAAGCCTACATTGCGTAGGCTATTTGATTTTATTTTGCCCa                                                                                                        >  1:77945/1‑143 (MQ=255)                                              aCCTTATAATTACAATGATTTTATTAATTCAAATATATGTAAAGCGGGGCATTAAAAAAACGCCCCGTAATATAACTCAGTCTTATCATTAAGCCTACATTGCGTAGGCTATTTGATTTTATTTTGCCCAGAATGCTGCTTTg                                                                                           <  2:11204/143‑1 (MQ=255)                                                     aaTTACAATTATTTTATTAATGCAAATATATGTAAAGCGGGGCATTAAAAAAACGCCCCGTAATATAACTCAGACTAATCATTAAGCCTACATTGCGTAGGCTATTTGATTTTATTTTGCCCAGAATGCTGCTTTTGCGCGCt                                                                                    >  1:710301/1‑143 (MQ=255)                                                       ttACAATTATTTTATTAATGCAAATATATGTAAAGCGGGGCAGCAGAAAAACGCCCCGTAATATAACTCAGACTAATCATTAAGCCTACATTGCGTAGGCTATTTGATTTTATTTTGCCCAGAATGCTGCTTTGGCGCGCTGc                                                                                  <  1:106131/143‑1 (MQ=255)                                                           aaTTATTTTATTAATGCAAATATATGTAAAGCGGGGCATTAAAAAAACGCCCCGTAATATAACTCAGACTAATCATTAAGCCTACATTGCGTAGGCTATTTGATTTTATTTTTACCAGAATGCTGATTTGGCTGACTGCAGCt                                                                              >  1:201812/1‑143 (MQ=255)                                                             ttattttattAATGCAAATATATGTAAAGCGGGGCATTAAAAAAACGCCCCGTAATATAACTCAGACTAATCATTAAGCCTACATTGCGTAGGCTATTTGATTTTATTTTGCCCAGACTGCTGCTTTGTCGCGCTGCAGCttt                                                                            >  2:624414/1‑143 (MQ=255)                                                                  ttattaATGCAAATATATGTAAAGCGGGGCATTAAAAAAACGCCCCGTAATATAACTCAGACTAATCATTAAGCCTACATTGCGTAGGCTATTTGATTTTATTTTGCCCAGAATGTTGCTTTGGCGCGCTGCAGCTTTTCGTa                                                                       <  2:359645/143‑1 (MQ=255)                                                                   tattaATGCAAATATATGTAAAGCGGGGCAGTAGAAAAACGCCCCGTAATATAACTCAGACTAAACATGAAGCCTACATTGCGTAGGCTATTTGATTTTATTTTGCCCAGAATGCTGCTTTGGCGCGCTGCAGCTTTTCGTAg                                                                      <  1:449368/143‑1 (MQ=255)                                                                         tGCAAATATATGTAAAGCGGGGCATTAAAAAAACGCCCCGTAATATAACTCAGACTAATCATTAAGCCTACATTGCGTAGGCTATTTGATTTTATTTTGCCCAGAATGCTGCTTTGGCGCGCTGCAGCTTTTCGTAGGCCTTc                                                                <  2:426664/143‑1 (MQ=255)                                                                            aaaTATATGTAAAGCGGGGCATTAAAAAAACGCCCCGTAATAGAACTCAGACTAATCATTAAGCCTACATTGCGTAGGCTATTTGATTTTATTTTGCCCAGAATGCTGCTTTGGCGCGCTGCAGCTGATGGTAGGCCTTcaac                                                             >  2:682679/1‑143 (MQ=255)                                                                                   tGTAAAGCGGGGCATTAAAAAAACGCCCCGTAATATAACTCAGACTAATCATTAAGCCTACATTGCGTAGGCTATTTGATTTTATTTTGCCCAGAATGCTGCTTTGGCGCGCTGCAGCTTTTCGTAGGCCTTCAACAACGACt                                                      >  1:764909/1‑143 (MQ=255)                                                                                   tGTAAAGCGGGGCATTAAAAAAACGCCCCGTAATATAACTCAGACTAATCATTAAGCCTACATTGCGTAGGCTATTTGATTTTATTTTGCCCAGAATGCTGCTTTGGCGCGCTGCAGCTTTTCGTAGGCCTTCAACAACGACt                                                      <  1:336695/143‑1 (MQ=255)                                                                                     gaaaGCGGGGCATTAAAACAACGCCCCGTAATATAACTCAGACTAATCATTAAGCCTACATTGCGTAGGCTATGTGATTTTATTTTGCCCAGAATGCTGCTTTGGCGCGCTGCAGCTTTTCGTAGGCCTTCAACAACGACTGa                                                    <  2:747285/142‑1 (MQ=255)                                                                                      aaaGCGGGGCATTAAAAAAACGCCCCGTAATATAACTCAGACTAATCATTAAGCCTACATTGCGTAGGCTATTTGATTTTATTTTGCCCAGAATGCTGCTTTGGCGCGCTGCAGCTTTTCCTAGACCTTCAACCACGGCTGAt                                                   >  2:763135/1‑143 (MQ=255)                                                                                        aGCGGGGCATTAAAAAAACGCCCCGTAATATAACTCAGACTAATCATTAAGCCTACATTGCGTAGGCTATATGATTTTGTTTTGCCCAGAATGCTGCGTTGGCGCGCTGCAGCTTTGCGTAGGCCTACGACAACGACTGAtgg                                                 >  1:301210/1‑142 (MQ=255)                                                                                         gCGGGGCATTAAAAAAACGCCCCGTAATATAACTCAGACTAATCATTAAGCCGACATTGCGTAGGCTATTTGATTTTATTTTGCCCAGAATGCTGCTTTGGCGCGCTGCAGCTTTTCGTAGGCCTTCAACAACGACTGAtgtg                                                <  1:132089/143‑1 (MQ=255)                                                                                          cGGGGCATTAAAAAAACGCCCCGTAATATAACTCAGACTAATCATTAAGCCTACATTGCGTAGGCTATTTGATTTTATTTTGCCCAGAATGCTGCTTTGGCGCGCTGCAGCTTTTCGTAGGCCTTCAACAACGACTGATGTgc                                               <  2:620086/143‑1 (MQ=255)                                                                                              gCATTAAAAAAACGCCCCGTAATATAACTCAGACTAATCATTAAGCCTACATTGCGTAGGCTAGTTGATTTTATTTTGCCCAGAATGCTGCTTTGGCGCGCTGCAGCTTTTCGTAGGCCTTCAACAACGACTGATGTgcagca                                           >  1:704681/1‑143 (MQ=255)                                                                                                 ttAAAAAAACGCCCCGTAATATAACTGAGACTAATCATTAAACCTACATTGCGTAGGCTATTTGATTTTATTTTGCCCAGAATGCTGCTTTGGCGCGCTGCAGCTTTTCGTAGGCCTTCAACAACGACTGATGTGCAGCCAAc                                        >  2:687073/1‑143 (MQ=255)                                                                                                 ttAAAAAAACGCCCCGTAATATAACTCAGACTAATCATTAAGCCTACATTGCGTAGGCTATTTGATTTTATTTTGCCCAGAATGCTGCTTTGGCGCGCTGCAGCTTTTCGTAGGCCTTCAACAACGACTGATGTGCAGCAAAc                                        >  1:601471/1‑143 (MQ=255)                                                                                                     aaaaaCGCCCCGTAATATAACTCAGACTAATCATTAAGCCTACATTGCGTAGGCTATTTGATTTTATTTTGCCCAGAATGCTGCTTTGGCGCGCTGCAGCTTTTCTTAGGGCGTCAACAGCGACTGATGTGCAGCAAACGCGt                                    >  1:26649/1‑143 (MQ=255)                                                                                                         aCGCCCCGTAATATAACTCAGACTAATCATTAAGCCTACATTGCGTAGGCTATTTGATCTTATTTTGCCCAGAATGCTGCTTTGGCGCGCTGCAGCTTTTCGTAGGCCTTCAACAACGACTGATGTGCAGCAAACGCGTGCAg                                <  2:59695/143‑1 (MQ=255)                                                                                                            ccccGTAATATAACTCAGACTAATCATTAAGCCTACATTGCGTAGGCTATTTGATTTTATTTTGCCCAGAATGCTGCTTTGGCGCGCTGCAGCTTTTCGTAGGCCTTCAACAACGACTGATGTGCAGCAAACGCGTGCAGATc                             >  1:107876/1‑143 (MQ=255)                                                                                                             cctctAATATTACTCAGACTACTCATCAAGCCTACATTGCGTAGGCTATTTGATTTTATTTTGCCCAGAATGCTGCTTTGGCGCGCTGCAGCTTTTCGTAGGCCTTCAACAACGACTGATGTGCAGCAAACGCGTGCAGATCg                            <  2:543311/139‑1 (MQ=255)                                                                                                                  aaTATAACTCAGACTAATCATTAAGCCTACATTGCGTAGGCTATTTGATTTTATTTTGCCCAGAATGCTGCTTTGGTGCGCTGCAGCTTTTCGTAGGCCTTCAACAACGACTGATGTGCAGCAAACGCGTGCAGATCGCTATc                       <  1:119886/143‑1 (MQ=255)                                                                                                                  aaTATAACTCAGACTAATCATTAAGCCTACATTGCGTAGGCTATTTGATTTTATTTTGCCCAGAATGCTGCTTTGGCGCGCTGCAGCTTTTCGTAGGCCTTCAACAACGACTGATGTGCAGCAAACGCGTGCAGATCGCTATc                       <  1:647291/143‑1 (MQ=255)                                                                                                                       aaCTCAGACTAATCATTAAGCCTACATTGCGTAGGCTATTTGATTTTATTTTGCCCAGAATGCTGCTTTGGCGCGCTGCAGCTTTTCGTAGGCCTTCAACAACGACTGATGTGCAGCAAACGCGTGCAGATCGCTATCTACCg                  <  1:622444/143‑1 (MQ=255)                                                                                                                         cTCAGACTAATCATTAAGCCTACATTGCGTAGGCTATTTGATTTTATTTTGCCCAGAATGCTGCTTTGGCGCGCTGCAGCTTTTCGTAGGCCTTCAACAACGACTGATGTGCAGCAAACGCGTGCAGATCGCTATCTACCGGt                >  1:382769/1‑143 (MQ=255)                                                                                                                                tAATCATTAAGCCTACATTGGGTAGGCTATTTGATTTTATTTTGCCCAGAATGCTGCTTTGGCGCGCTGAAGCTTTTCGTAGGCCTTCAACAACGACTGATGTGCAGCAAACGCGTGCAGATCGCTATCTACCGGTTGCAGGc         <  2:379620/143‑1 (MQ=255)                                                                                                                                tAATCATTAAGCCTACATTGCGTAGGCTATTTGATTTTATTTTGCCCAGAATGCTGCTTTGGCGCGCTGCAGCTTTTCGTAGGCCTTCAACTACGACTGATGTGCAGCAAACGCGTGCAGGTCGCTATCTACCGGTTGCAGGc         >  2:521255/1‑143 (MQ=255)                                                                                                                                tAATCATTAAGCCTACATTGCGTAGGCTATTTGATTTTATTTTGCCCAGAATGCTGCTTTGGCGCGCTGCAGCTTTTCATAGGCCTTCAACAACGACTCATGTGCAGCAAACACGTGCCCACCCCTACCCACCGCTCGCAGGc         >  1:648918/1‑143 (MQ=255)                                                                                                                                     aTTAAGCCTACATTGCGTAGGCTATTTGATTTTATTTTGCCCAGAATGCTGCTTTGGCGCGCTGCAGCTTTTCGTCGGCCTTCAACAACGCCTGCTGTGCAGCAAACGCCTGCAGATCGCTATCTACCGGGTGCGCGCCGTaa    >  2:707639/1‑143 (MQ=255)                                                                                                                                       tAAGCCTACATTGCGTAGGCTATTTGATTTTATTTTGCCCAGAATGCTGCTTTGGCGCGCTGCAGCTTTTCGTAGGCCTTCAACCACGACTGATGTGCAGCAAACGCGTGCAGATCGCTATCTACCGGTTGCAGGCCGTaaaa  <  2:153319/143‑1 (MQ=255)                                                                                                                                         |                                                                                                                                             TAACAATATCGATCGTATTTATTAAATACAAATTACCGATATTTAACCTTATAATTACAATTATTTTATTAATGCAAATATATGTAAAGCGGGGCATTAAAAAAACGCCCCGTAATATAACTCAGACTAATCATTAAGCCTACATTGCGTAGGCTATTTGATTTTATTTTGCCCAGAATGCTGCTTTGGCGCGCTGCAGCTTTTCGTAGGCCTTCAACAACGACTGATGTGCAGCAAACGCGTGCAGATCGCTATCTACCGGTTGCAGGCCGTAAAA  >  NC_000913/954709‑954985

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.