New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1387244	38 (0.840)	3 (0.070)	3/268	6.4	7.3%	coding (525/1542 nt)	tyrR	aromatic amino acid biosynthesis and transport regulon transcriptional regulator, autorepressor, ATPase, phosphatase
	?	NC_000913	= 1387310	40 (0.940)					coding (591/1542 nt)	tyrR	aromatic amino acid biosynthesis and transport regulon transcriptional regulator, autorepressor, ATPase, phosphatase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GTTATTAATGGGCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGCCGTCAGCCCGAAAATGAAGCATGTTGTCGAACAGGCGCAGAAACTGGCGATGCTAAGCGCGCCGCTGCTGATTACGGGTGACACAGGTACAGGTAAAGATCTCTTT  >  NC_000913/1387170‑1387448                                                                                                                                             |                                                                                                                                           gTTATTAATGGGCAGAATTTCCTGATGGAGATTACGCCTGGTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCa                                                                                                                                          <  2:19809/143‑1 (MQ=255)          gggCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAg                                                                                                                                 >  2:521743/1‑143 (MQ=255)            gCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAACTGTCGCCGCCCAGGACGTCAgcg                                                                                                                               >  2:39691/1‑143 (MQ=255)            gCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAgcg                                                                                                                               >  1:673331/1‑143 (MQ=255)             cAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCTGTTGCAAAATGTCGCCGCCCAGGCCGTCAgggc                                                                                                                              >  1:200810/1‑143 (MQ=255)               gAATTTCCTGATGGAGATTACGCCTGTTTATCTTCCGTATGAAAATGATCAACACGTCCTGACCGGTCCGGCGCTGATCTTGCGATCAACGATTCGCATGGGCCGCCAGCCGCAACATGTCGCCGCCCAGCACCCCCGCGccc                                                                                                                            >  2:697382/1‑142 (MQ=255)                 atgtCCTGGTGGGGATTACGCCTGTTTAGCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGAGGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTc                                                                                                                          <  1:344663/140‑1 (MQ=255)                      cTGATGGAGGTTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCa                                                                                                                     <  2:105171/143‑1 (MQ=255)                      cTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAGATGTCGCGGCCCAGGGCGTCAGCGCCTTCAGTCa                                                                                                                     >  1:635862/1‑143 (MQ=255)                        gctGGAGATTACGCCTGTTTATCTTCCGGATGACAATGATCACCACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCaaa                                                                                                                   <  1:477223/141‑1 (MQ=255)                              gaTTACGCCTGTTTATCTTCAGGATGACAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGACGCCAAGGACGTCAGCGCCTTCAGTCAAATTGTCg                                                                                                             <  2:279479/143‑1 (MQ=255)                               cttgtgCCTGTTGATCTTCAGGATGCATATGATCAGCACGTCCTGACCGGTGCGGTGGTGACGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATGGTCGc                                                                                                            <  2:652623/138‑1 (MQ=255)                                tgaCGCCGGTTTATCTGCAGGATGAAAAGGATCAACACGTCCTGACCGGGGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGcc                                                                                                           <  1:277602/141‑1 (MQ=255)                                  aCGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGCCGt                                                                                                         <  2:171486/143‑1 (MQ=255)                                       tggatatcgacAGGAGGAAAATGCGGAACACGGCCGGCCCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGTCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGCCGTCAGcc                                                                                                    <  1:128831/133‑1 (MQ=255)                                                tCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGAAGACCAGTACGTTTGTGCCTTCAGTCAAATTGTCGCCGTCAGCCCGCAAATGa                                                                                           >  1:328994/1‑143 (MQ=255)                                                         aaaTGATCCACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAGTTGTCGCCGTCCGCCCGAAGATGAAGCAtgtcg                                                                                  >  1:785148/1‑141 (MQ=255)                                                               tcatcaCGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGCCGTCAGCCCGAAAATGAAGCATGTTGTCGAAc                                                                            <  2:712421/143‑1 (MQ=255)                                                                   cacGGCCGGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGCCGTCAGCCCGAAAATGAAGCATGTTGTCGAACAGgc                                                                        <  1:762938/143‑1 (MQ=255)                                                                      gTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGGATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGCCGCCACCCCGGAAATGAAGCATGTTGCCGAACAGgcgaa                                                                     >  2:544209/1‑141 (MQ=255)                                                                           gACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGCCGTCAGCCCGAAAATGACGCATGTTGTCGAACAGgcggcgaacc                                                                >  2:718042/1‑136 (MQ=255)                                                                                    tgtggtgATGTTGCGATGGACGATTCGTATGGGGCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGTGCCTTCAGTCAAATTGTCGCCGTCAGCCCGAAAATGAAGCATGTTGTCGAACAGGCGCAGAAACTGGCGATGc                                                       <  2:613543/142‑1 (MQ=255)                                                                                    gctggtgTTGTTGCGATAAACGTTTCCTATGCGTCGCATTTTGCAAAGTTGCGCCGCCCTGGACGTTCGCCCCTTCAGTCAAATTGTCGCCGTCAGCCCGAGTATGAAGCATGTTTTCGAACAGGCGCAGAAACTGGCGATGc                                                       <  2:189018/141‑1 (MQ=255)                                                                                     gtggtgATGTTGCGCTCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGCCGTCAGCCCGAAAATGAAGCATGTTGTCGAACAGCCCCAGAACCTGGCGAtccg                                                      >  2:644429/1‑140 (MQ=255)                                                                                       ggtgATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGCCGTCAGCCCGAAAATGAAGCATGTTGTCGAACAGGCGCAGAAACTGGCGATGCTaa                                                    <  1:521743/143‑1 (MQ=255)                                                                                             gTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGCCGTCAGCCCGAAAATGAAGCATGTTGTCGAACAGGCGCAGAAACTGGCGATGCTAAgcgcgc                                              >  2:298159/1‑143 (MQ=255)                                                                                              ttGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGCCGTCAGCCCGAAAATGAAGCATGCTGCCGAACAGGAGCAGCAACTGACGATGCTAAGCGcgcc                                             >  2:220031/1‑143 (MQ=255)                                                                                                   aTCAACGATTCGCATGGGCCGCCAGTTGCAAAAGGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGCCGTCAGCCCGAAAATGAAGCATGTTGTCGAACAGGCGCAGAAACTGGCGATGCTAAGCGCGCCgctgc                                        <  1:552787/143‑1 (MQ=255)                                                                                                    tCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCCCCTTCAGTCAAATTCTCGCCGTCAGCCCGACAACGCAGCCTGTTCTCGAACAGGCGCAGCAACTGGCGACGCTAACCGCGCCgccgct                                       >  2:174543/1‑143 (MQ=255)                                                                                                           ttCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGCCGTCAGCCCGAAAATGAAGCATGTTGTCGAACAGGCGCAGAAACTGGCGATGCTAAGCGCGCCGCTGCTGATTACg                                <  1:688949/143‑1 (MQ=255)                                                                                                              ggtgggggCGCCATTTGCAAGATGTCGCGGGCTAGGACGTCAGCGCCTTCAGTGAAATTGTCGCCGTCAGCCCGAAAATGAAGCATGTTGTCGAACAGGCGCAGAAACTGGCGATGCTAAGCGCGCCGCTGCTGATTACGGGt                             <  2:111688/139‑1 (MQ=255)                                                                                                                  gggACGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCTCCGTCAGCCCGAAAATGAAGCATGTTGTCGAACAGGCGCAGAAACTGGCGATGCTAAGCGCGCCGGTGGNGATCACGGGTGaca                         >  1:652492/1‑143 (MQ=255)                                                                                                                     ccgccAGTGGCAAAACGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGCCGTCAGCCCGAAAATGAAGCATGTTGTCGAACAGGCGCAGAAACTGGCGATGCTAAGCGCGCCGCTGCTGATTACGGGTGACacag                      <  1:718042/143‑1 (MQ=255)                                                                                                                         ctgTTGTAAGATGTCGTCGCGCAGGACGTCAGCGCCTTCAGTCAGTTTGTCGCCGTCAGCCCGAAGATGACGCATGTTGTCGAACAGGTGCAGAAGCTGGCGATGCTAAGCGCGCCGCTGCTGATTACGGGTGACacaggtac                  <  2:286269/141‑1 (MQ=255)                                                                                                                            ttGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGCCGTCAGCCCGAAAATGAAGCATGTTGTCGAACAGGCGCAGAAACTGGCGATGCTAAGCGCGCCGCTGCTGATCACGGGTGACacaggtacagg               >  2:56204/1‑143 (MQ=255)                                                                                                                                aaaaTGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGCCGTCAGCCCGAAAATGAAGCATGTTGTCGAACAGGCGCAGAAACTGGCGCTGCTAAGCGCGCCGCTGCTGATTACGGGTCACACAGGTACAGGTaaa           >  2:235715/1‑143 (MQ=255)                                                                                                                                 aaaTGTCGCCGCCCAGGACGTCAGCGCCGTCAGTCAAATTGTCGCCGTCAGCCCGAAAATGAAGCATGTTGTCGAACAGGCGCAGCAACTGGAGATGCTAAGCGCGCCCCTGCTGCTTGCGGGGAGCacagggaccagaaaag          >  2:81962/1‑135 (MQ=255)                                                                                                                                   gggTCGCCGCCCAGGGCGTCAGCGCCTTCAGTCAAATTGTCGCCGTCAGCCCGAAAATGATGCATGTTGGCGAACAGGCGCAGAAACTGGCGATGCTAAGCGCGCCGCTGCTGATTACGGGTGACACAGGTACAGGTAAAGAt        <  2:23039/141‑1 (MQ=255)                                                                                                                                      tCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGCCGTCAGCCCGAAACTGCAGCATGTTGTCGAACAGGCGCAGAAACTGGCGACGACACGCACGCCGCTGCCGCACTGGGGTGACCCAGGTACAGGTATAgcccac     >  2:721712/1‑138 (MQ=255)                                                                                                                                         cggccCAAGATGTCACCGCCTTCTGTTAAATTGGCGCCGTCAGCGCGAAAATGAAGCATGTTGTCGAACAGACGCAGATACTGGCGATGCTAAGCGCGCCGCTGCTGATTACGGGTGACACAGGTACAGGTAAAGATCTCttt  <  2:10841/141‑1 (MQ=255)                                                                                                                                         ccgccCAGGACGTCAGCGCCTTCAGTCAAATTGTCGCCGTCAGCCCGAAAATGAAGCATGTTGTCGAACAGGCGCAGAAACTGGCGATGCTAAGCGCGCCGCTGCTGATTACGGGTGACACAGGTACAGGTAAAGATCTCttt  <  1:71492/143‑1 (MQ=255)                                                                                                                                             |                                                                                                                                           GTTATTAATGGGCAGAATTTCCTGATGGAGATTACGCCTGTTTATCTTCAGGATGAAAATGATCAACACGTCCTGACCGGTGCGGTGGTGATGTTGCGATCAACGATTCGTATGGGCCGCCAGTTGCAAAATGTCGCCGCCCAGGACGTCAGCGCCTTCAGTCAAATTGTCGCCGTCAGCCCGAAAATGAAGCATGTTGTCGAACAGGCGCAGAAACTGGCGATGCTAAGCGCGCCGCTGCTGATTACGGGTGACACAGGTACAGGTAAAGATCTCTTT  >  NC_000913/1387170‑1387448

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.