New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1979489	2 (0.040)	55 (1.220)	29/284	0.5	96.5%	intergenic (‑274/‑264)	insA/uspC	IS1 repressor TnpA/universal stress protein
	?	NC_000913	= 2290111	NA (NA)					intergenic (‑32/+1)	insH1/yejO	IS5 transposase and trans‑activator/pseudogene, autotransporter outer membrane homology,putative transport, Not classified, putative ATP‑binding component of a transport system

AAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATA  >  NC_000913/2289970‑2290247                                                                                                                                              |                                                                                                                                         aaGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCa                                                                                                                                         >  2:183124/1‑143 (MQ=11)   gAAAATCTCTTTTCTGGTCTGACGGCCATACCTGCATAAATAATTGTGGGCGTAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACATTCCATa                                                                                                                                       >  1:538910/1‑143 (MQ=11)    aaaaTCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGATCCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATaa                                                                                                                                      <  2:521499/143‑1 (MQ=17)         ctctctTCTGGTCTGACGGCGCTTACTGCTGCATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTg                                                                                                                                 <  1:544232/143‑1 (MQ=255)           ctgttCTGGGCTGGCGGCGCGTGCTGCTGGGTTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTa                                                                                                                               <  2:395955/140‑1 (MQ=14)              ttCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGcc                                                                                                                            <  1:183124/143‑1 (MQ=40)                  ggTCTGACGGCGCTTGCTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGACGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGccacca                                                                                                                        <  2:648311/143‑1 (MQ=255)                       gccGGCGCGGACCGCTCAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACa                                                                                                                   <  1:103160/141‑1 (MQ=255)                       gACGGCGCTTACTGCGGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACa                                                                                                                   <  2:730190/143‑1 (MQ=255)                                tACTGCTGAATTCCCCGTCCCCCAATGTAAGTTGATGACTCATGATGGACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCg                                                                                                          <  1:65487/143‑1 (MQ=17)                                tACTGCTGAATGCACTGTCTGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCg                                                                                                          <  2:121228/143‑1 (MQ=255)                                     ctgAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCCCCGGAACAGATATTGCGGAACg                                                                                                     >  1:154252/1‑143 (MQ=255)                                       gacttCACTGTCGGCGAAGGTAAGCTGATGACTCATGATGAACCCTGTCCTATGGCTCCAGATGACAAACATGATCGCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGAc                                                                                                   <  1:130837/140‑1 (MQ=255)                                       gAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGAc                                                                                                   >  1:342845/1‑143 (MQ=255)                                        aaTTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACa                                                                                                  >  1:457282/1‑143 (MQ=255)                                          ttCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACaaa                                                                                                >  1:62231/1‑143 (MQ=255)                                          gccACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACaaa                                                                                                <  1:362971/141‑1 (MQ=255)                                             aCTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGCTGACAAACCTGATCTCATATCAGGGACTTGTTCGCAGCTTCCAGAACGCTGTAGCCACCAGAGAAGATATTGCGGACCGACAAagag                                                                                             >  1:684792/1‑143 (MQ=18)                                                    gCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGa                                                                                      <  1:659715/143‑1 (MQ=255)                                                     cGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGaa                                                                                     >  2:622130/1‑143 (MQ=255)                                                      gAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTACGGAACGACAAAGAGAAAACGAAc                                                                                    >  2:438513/1‑143 (MQ=255)                                                               ctgatgaCTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGAt                                                                           <  1:194940/142‑1 (MQ=255)                                                                    gaCTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCAtt                                                                      >  1:426021/1‑143 (MQ=255)                                                                         atgatgAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGACAAGATATTGCGGAACGACAAAGAGGAAGCGCGCCAGATTGATCCagtcacct                                                                 >  1:206684/1‑136 (MQ=18)                                                                         atgatgAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCt                                                                 >  1:754863/1‑143 (MQ=255)                                                                         atgatgAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATGGATGCATTGAGCt                                                                 >  2:521217/1‑143 (MQ=255)                                                                         atgatgAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAACCACCAGAACAGATATTGCGGAACGACAAAGAAAAACAGAACCAGATTGATGCATTGAGCt                                                                 >  2:235744/1‑143 (MQ=255)                                                                             tgaACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGAGTGATGCATTGAGATTTCa                                                             >  2:187247/1‑143 (MQ=255)                                                                             tgaACCCCTGTCTCTGGCTTCAGTTGATAAACATGATCTCATGTCAGGGACTTGGTCGCACCTTCCATCACGCTGTAGCCACCAGAACAGCTATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCa                                                             <  2:372671/143‑1 (MQ=255)                                                                              gaACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCAt                                                            >  1:605845/1‑143 (MQ=255)                                                                               tggccTGTTCTATGCCTCCAGATGACAAACATGATCTCATATCGGAGTTGTGTTCGCTCCTTCCATCACGCTGTAGCCACCAGAACAGATATTGCTTAATGACATAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATc                                                           <  2:722396/140‑1 (MQ=25)                                                                               aaCCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATc                                                           <  1:507946/143‑1 (MQ=255)                                                                                 cccTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTAATGCATTGAGCTTTCATCCt                                                         >  2:326829/1‑143 (MQ=255)                                                                                  ccTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTa                                                        >  1:56591/1‑143 (MQ=255)                                                                                  ccTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTGTCATACTa                                                        >  2:784856/1‑143 (MQ=255)                                                                                    tGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCCTTCAGCCTagg                                                      >  2:6735/1‑141 (MQ=255)                                                                                      ttCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGaa                                                    >  1:375081/1‑143 (MQ=255)                                                                                          aTGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGGagtta                                                >  1:70525/1‑143 (MQ=255)                                                                                            ggCTCCAGCTCACAATCACGATCGCCATTCAGTGACCCCCTCGCGCCTTCTAGTACGCTGTAGCCACCAGAACATATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAaattaat                                              <  1:699498/143‑1 (MQ=255)                                                                                               tCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGCGAAACAGAACCAGATTGATGCATTGAGGTTTCATCCTGTTAaattaattac                                           >  1:159811/1‑141 (MQ=255)                                                                                                      gACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCATAACAGATATTGCGGGACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCGTAGGAAATTAATTGCTGTTaaa                                    >  1:55269/1‑143 (MQ=255)                                                                                                      gACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGCAATTGATTGCTGTTaaa                                    >  1:20606/1‑143 (MQ=255)                                                                                                       aCAAACATGATGTCATAGCAGGGACTTGTTCGCACCGTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTaaaa                                   <  2:159811/143‑1 (MQ=255)                                                                                                         aaaCATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGc                                 >  2:171671/1‑143 (MQ=255)                                                                                                         aaaCATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGc                                 >  1:120020/1‑143 (MQ=255)                                                                                                         aaaCATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCAGCTGCGCTACCAACAGATTTTGCCAGAGATCTAAGAGTAACAGAACCAGATTGCTGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGc                                 >  1:364197/1‑143 (MQ=19)                                                                                                           aCATGATCTCATATCAGGGACTTGTTAGCACCTTCCATAACGCTGTAGCCACCAGAACAGAGATTGCGGACCGACAAAGAGAAACAGAACCAGATGGATCCATTGAGCCTCCATCCTATAGAACTAAGTGCTGCTCAAAGCAt                               >  2:419158/1‑143 (MQ=37)                                                                                                            cATGATCTCGTATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCAtt                              <  1:3644/143‑1 (MQ=255)                                                                                                            cATGATCTCATATCAGGGACTTGTTCGCCAATTACGTTGCTCTGTAGCTACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCAtt                              <  2:551853/143‑1 (MQ=255)                                                                                                            cATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCAtt                              <  1:171671/143‑1 (MQ=255)                                                                                                               gATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGGCAGAGAGAAACAGAACCAAAATGATTGAGGTAGCTTTCATCCTATGAAATTGATTGCTGTTAAAAGCATTggg                           >  1:534547/1‑143 (MQ=255)                                                                                                                aTCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCGCCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTAAGCTTTCATCCTATGAAATTAATTGCTAGTAAAAGAATTGGGt                          >  2:417942/1‑143 (MQ=255)                                                                                                                aTCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACAAGATTGATGCATTGAGCTTTCATCATATGAAGTTAATGGCTGTGAAAAGCAttctgt                          >  2:469151/1‑139 (MQ=255)                                                                                                                 tctcATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTa                         >  1:84907/1‑143 (MQ=255)                                                                                                                   tcATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCt                                          <  1:66167/124‑1 (MQ=255)                                                                                                                   tcATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCt                                          >  2:66167/1‑124 (MQ=255)                                                                                                                     atatCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCAGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGCGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGATACAGa                     >  2:30944/1‑143 (MQ=255)                                                                                                                               cTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCAt           <  1:87300/143‑1 (MQ=255)                                                                                                                                 tGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATCCCCATAg         >  1:602518/1‑143 (MQ=255)                                                                                                                                 cgTTTGCACCTTCCATAACGCTGTAGCCACAAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATGGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAg         <  2:151646/142‑1 (MQ=255)                                                                                                                                  gTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGCTTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGGTAAAAGCATTGGGTACAGAAAATAccccgagc        >  1:132114/1‑138 (MQ=255)                                                                                                                                        aCCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGACATTACCCATGGCTCCATa  >  1:102690/1‑143 (MQ=255)                                                                                                                                              |                                                                                                                                         AAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATA  >  NC_000913/2289970‑2290247

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.