New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1979489	0 (0.000)	17 (0.700)	13/492	NT	100%	intergenic (‑274/‑264)	insA/uspC	IS1 repressor TnpA/universal stress protein
	?	NC_000913	= 2290111	NA (NA)					intergenic (‑32/+1)	insH1/yejO	IS5 transposase and trans‑activator/pseudogene, autotransporter outer membrane homology,putative transport, Not classified, putative ATP‑binding component of a transport system

TCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTGATTGATTAATTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTTCACAGAATAAGGAACAGGTTATGAGCTATAG  >  NC_000913/1979225‑1979763                                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                                                   gtcaataatgcgtgatgcagatcacacaaaacactctattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTGTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAacaaactaaggaaggt                                                                                                                                                                                                                                                                             <  2:172670‑M2/218‑8 (MQ=255)      taatgcgggatgcagatcacacaaaacactcaattacttaacataaatgTAGAAGTCATACTTTTGTTTTGGGTTTATTGCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACGCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTAccgcacaacaaactaaggaaggtgcgaaca                                                                                                                                                                                                                                                                      <  1:153835‑M2/225‑15 (MQ=255)                ggggttgctgaaaaacgataaccaactggcgatgttattcacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAAt                                                                                                                                                                                                                                                            >  1:20806‑M1/247‑274 (MQ=255)                        tgaaaaacgataaccaactggcgatgttattcacgctggccaacctggttcgggcggaccaaatgatacgtcagtcggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcgtctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACttaat                                                                                                                                                                                                                                                   >  2:154509‑M1/239‑275 (MQ=255)                          acaaaacactcaattacttaacataaatgtataagtcatacttTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatataaaatcat                                                                                                                                                                                                                                                  >  1:10880‑M1/22‑240 (MQ=255)                                 agaaccacttggggttgttattcgcggtcgccaaccggtgtcgtgcggaccaaatgatacgtcagtgggagggatttaactaaaaactggggataacgccttgaagggcgaagaaactgtctaaataggcggattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGaa                                                                                                                                                                                                                                          >  1:125507‑M1/230‑275 (MQ=255)                                          tggcgatgttattcacgctggccaacctgtttcgggcggaacaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTAc                                                                                                                                                                                                                                 >  2:232948‑M1/221‑275 (MQ=255)                                           tgaacataaATTTATAAGTCATACTGTTGTTTTGTGTGTATTTCAATCTGTGAAAATGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCAAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagcca                                                                                                                                                                                                                                <  2:86440‑M1/271‑53 (MQ=255)                                                          gctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAAGCACACATCAAATTAAGGTTAATGACATGTTTTACATATATTAACCACTTg                                                                                                                                                                                                                 <  2:117724‑M1/71‑1 (MQ=255)                                                                   cctgtttcggggggaccaaatgatacgtcagggggagagatctaactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCg                                                                                                                                                                                                        >  1:122117‑M1/196‑275 (MQ=255)                                                                      gttgcgggcggaccaaatgctacggcagtgggagagatttcactaaaaactggggataacaccttaaatggcgaagaaacggtcgaaataggctgagtcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACATTCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCggat                                                                                                                                                                                                     >  2:221469‑M1/193‑274 (MQ=255)                                                                                             ttAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAgga                                                                                                                                                                                                                                                                                 >  2:62494‑M1/1‑173 (MQ=255)                                                                                             gtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACatatat                                                                                                                                                                                                                           <  2:7753‑M1/61‑1 (MQ=255)                                                                                                 gtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAAc                                                                                                                                                                                                                       >  1:7753‑M1/166‑230 (MQ=255)                                                                                                 aaaGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggt                                                                                                                                                                                                                                                                             <  1:62493‑M1/176‑8 (MQ=255)                                                                                                                atcgaaacgggggataacgccttaaatggcggagaaacggtctaaataggctgagtcaatgcatgtacgggaggaaaaatctgctcaaacctgaagaaattgaatggctgagtcagccgagaagcatttccccgcttattcgcaccttccCGAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCTGTACACTAGTTTCTTATAATTACATTTGAAattaga                                                                                                                                                            >  1:110698‑M1/151‑272 (MQ=255)                                                                                                                         ggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCgg                                                                                                                                                  <  1:195975‑M1/134‑1 (MQ=255)                                                                                                                         ggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTAAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTc                                                                                                                                                                                   <  1:84871‑M1/101‑1 (MQ=255)                                                                                                                             ataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTAAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTtat                                                                                                                                                                               >  2:84872‑M1/138‑242 (MQ=255)                                                                                                                               aacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGtga                                                                                                                                            >  1:66716‑M1/136‑275 (MQ=255)                                                                                                                                             tCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgca                                                                                                                              <  2:11414‑M1/275‑151 (MQ=255)                                                                                                                                                        tctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgcagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTGATTGATTAATTATCTTTACTaataat                                                                                                                   >  2:21002‑M1/111‑275 (MQ=255)                                                                                                                                                                 gctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTGATTGATTAATTATCTTTACtaa                                                                                                                       <  1:21002‑M1/161‑1 (MQ=255)                                                                                                                                                                                   gTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTCTTTTTAAACAGACACTTACCGCACAACAAACTAAgtaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggaggcatagaacagggttcatcatgagtcatcaaattaccttcgccgacagtgaattcagcagtaagcgccgtcagaacagaaaagagattttcttgtcccgcatggagcagattctgccatggaaaaacatggaggaagt                                                                                         >  2:183623‑M1/1‑87 (MQ=255)                                                                                                                                                                                    tAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGAAACTTACCGCACAACAAACTAAggaaggtaccaacaagtccctgatatgagatcatgtttgtcatctggagccatcgaacagggttcatcatgagtcatcaacttaacttcgcagacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagatactgccatggccaaccatggcggaagtc                                                                                        >  2:171663‑M1/1‑86 (MQ=255)                                                                                                                                                                                          atcattTGCTATCAATAATAACTTTCCTGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagtcatcgagc                                                                                 <  2:28513‑M1/275‑196 (MQ=255)                                                                                                                                                                                            catcTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagtcatcgagccg                                                                               >  1:14539‑M1/1‑78 (MQ=255)                                                                                                                                                                                                                 ttCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaaatccctgatatgagatcatgtttgtcatctggagccatagaacagggtgcatcatgagtcatcaacttaccttcgccgacaatgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagccgattctaccatggcaaaacatggtggaagtcatcgagccgttttaccccaaggctggtaat                                                          >  2:199043‑M1/1‑57 (MQ=255)                                                                                                                                                                                                                                aTAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagtcatcgagccgttttac                                                                         >  1:15022‑M1/1‑42 (MQ=255)                                                                                                                                                                                                                                aTAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgga                                                                                                                                                                                                                                    >  1:233475‑M1/1‑42 (MQ=255)                                                                                                                                                                                                                                aTAAGCTATTTTTAAACAGACACTTACCGCACAAAAAAGTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgggtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagtcatcgagccgttttaccccaaggctggtaatggccggcgaccttat                                           <  1:171662‑M1/275‑234 (MQ=255)                                                                                                                                                                                                                                    gCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagtcatcgagccgttttacccca                                                                     <  2:15022‑M1/245‑208 (MQ=255)                                                                                                                                                                                                                                    gCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcc                                                                                                                                  >  1:78436‑M1/1‑38 (MQ=255)                                                                                                                                                                                                                                    gCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagcca                                                                                                                                                                                                                                <  2:233477‑M1/90‑53 (MQ=255)                                                                                                                                                                                                                                        tttttAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgca                                                                                                                              <  2:78437‑M1/184‑151 (MQ=255)                                                                                                                                                                                                                                          attaAACATACCCTTTCCCCACAACAAACTAAggaaagttcgaaccaggccctgatatgagatcatgtttgtcatctggagccatcgaacagggttcatcaagagtcatcaacttaccttcgccgacagtgaattcagcagtaaccgccgtcagaccagaaaagagattttcttgtcccgtatggagcagattctgccatggcaaaacatggtggaagtcatcgagccgttttaccccaatgctggtaatggccggcgaccttatccgctggaaa                                 <  2:10880‑M1/274‑244 (MQ=255)                                                                                                                                                                                                                                                                     aCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagtcatcaagccgttttaccccaaggctggtaatggccggcgaccttatccgctggaaaccatgctacgcattcactgcatgcagc      >  2:151149‑M1/1‑5 (MQ=255)                                                                                                                                                                                                                                                                      cTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagtcatcgagccgttttaccccaaggctggtaatggccggcgaccttatccgctggaaaccatgctacgcattcactgcatgcagca     <  2:16695‑M1/275‑272 (MQ=255)                                                                                                                                                                                                                                                                         aggaaggtgcgaacaaagccctgatatgatatcatgtttgtcatctagagacatagcacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagtcatcgagccgttttaccccaaggctggtaatggccggcgaccttatccgctggaaaccatgctacgcattcactgcatgcagca     <  2:214406‑M1/272‑272 (MQ=255)                                                                                                                                                                                                                                                                         aTTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTGATTGATTAATTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTTGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTTCACAGAATAAGGAACAGGTTATGAGCTATAg  <  2:195976/275‑1 (MQ=255)                                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                                                   TCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTGATTGATTAATTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCACCTGAAGTTCACAGAATAAGGAACAGGTTATGAGCTATAG  >  NC_000913/1979225‑1979763

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.