New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2729416	29 (0.510)	8 (0.150)	7/272	5.4	22.4%	noncoding (27/76 nt)	gltW	tRNA‑Glu
	?	NC_000913	3943479 =	NA (NA)					noncoding (46/76 nt)	gltU	tRNA‑Glu
Rejected: Coverage evenness skew score above cutoff.

CCAGATTTTTAAAGAGCAAATATATCAAACAAGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAA  >  NC_000913/2729276‑2729541                                                                                                                                               |                                                                                                                              ccAGATTTTTAAAGAGCAAATATATCAAACAATACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGgtgt                                                                                                                             >  2:977812/1‑143 (MQ=255)  cAGATTTTTAAAGAGCAAATATATCAAACAAGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTc                                                                                                                            >  2:510494/1‑143 (MQ=255)   aGATTTTTAAAGAGCAAATATATCAAACAAGATTTAGCGTTCTGGTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAGCCAGCAAGTGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTcc                                                                                                                           <  1:960245/143‑1 (MQ=17)      tttttAAAGAGCAAATATAGCAAACGAGACTTACCAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCGCAACCCAGCAAGGGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTgg                                                                                                                        <  1:219114/143‑1 (MQ=18)       ttttAAAGAGCAAATATATCAAACAAGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTCTCCTggg                                                                                                                       >  2:425054/1‑143 (MQ=255)        tttACAGAGGAAATATATCAAACAAGACGTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAGCCGGCAGGTGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGc                                                                                                                      <  1:325335/143‑1 (MQ=17)        tttAAAGAGCAAATATATCAAACAAGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGc                                                                                                                      <  2:874148/143‑1 (MQ=255)           aaaGAGCAAATATATCAAACAAGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCC‑‑TAGGGGGTTCGAACCCCTGTTACCGCCGGGAAAGGGCGGTGTCCGGGGCctc                                                                                                                   >  1:456747/1‑143 (MQ=255)             agtgCAAATATTTCAAACAAGACGTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCATGTGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTa                                                                                                                 <  1:922761/140‑1 (MQ=255)             agagCAAATATATCAAACAAGACTTAACAGTCTGTTTTGAGATAGTGAGGTCGGCGACTTTTGCTGGAAAGCCCACAAAGGGCGTGCAGTTTTGTGGA‑TC‑AACCGCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTa                                                                                                                 <  2:458563/143‑1 (MQ=12)                    atatatCAAACAAGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAg                                                                                                          <  2:535367/143‑1 (MQ=255)                    atatatCAAACAAGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAg                                                                                                          <  2:529201/143‑1 (MQ=255)                           aaaCAAGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGacac                                                                                                   <  2:145857/143‑1 (MQ=255)                                    ttAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGc                                                                                          >  1:497338/1‑143 (MQ=40)                                          gTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGACAGGGCGGTGTCCTGGCCCTCTAGACGAAGGGGACACGAAAATTGCTTATCa                                                                                    >  1:60702/1‑143 (MQ=25)                                           tCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGCAAATTGCttcccac                                                                                   >  2:309540/1‑138 (MQ=255)                                               ttttGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGt                                                                               >  2:837152/1‑143 (MQ=32)                                               ttttGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGt                                                                               >  2:961573/1‑143 (MQ=32)                                                  tGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGc                                                                            <  2:822314/143‑1 (MQ=32)                                                  tGAGATATTGACGTCGGCGACTTTCACTCACAAACCAGTAAGTGGCGTCCCC‑‑TAGGGGATTCGGACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGc                                                                            <  1:935598/143‑1 (MQ=12)                                                      atatTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGa                                                                        >  1:624570/1‑143 (MQ=32)                                                      atatTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATGGCTTATCACGCGTTGCGCGa                                                                        >  1:470858/1‑143 (MQ=17)                                                         ttggaggcGGCGACTCTCCCTCACAAACCAGCAAGTGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCAACGCGTGataa                                                                     <  2:155152/136‑2 (MQ=1)                                                         ttGAGGTACGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGCGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCAACGCGTGataa                                                                     <  2:63748/143‑2 (MQ=11)                                                                                   tccagtcaggggCGTCCCC‑‑GCGGGGATCCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTaa                                           <  1:117462/133‑1 (MQ=1)                                                                                    cccgCAAGGGCCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGTAGGTTACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAAt                                          <  2:888838/140‑1 (MQ=1)                                                                                           gtcgCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGc                                   <  2:282967/140‑1 (MQ=1)                                                                                                                tcggagcccTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCTCGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTc                <  1:771321/137‑1 (MQ=0)                                                                                                                              cctccgTGAAAGGGCGGTGTCGTGGGCCTCTAGACGAATGTGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCaa  <  2:264597/140‑1 (MQ=0)                                                                                                                                               |                                                                                                                              CCAGATTTTTAAAGAGCAAATATATCAAACAAGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAA  >  NC_000913/2729276‑2729541

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.