New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2729403	33 (0.580)	7 (0.130)	6/272	5.8	18.8%	noncoding (40/76 nt)	gltW	tRNA‑Glu
	?	NC_000913	= 2729410	29 (0.530)					noncoding (33/76 nt)	gltW	tRNA‑Glu
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AGCTTGATCCAGATTTTTAAAGAGCAAATATATCAAACAAGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAA  >  NC_000913/2729268‑2729541                                                                                                                                                 |                                                                                                                                    aGCTTGATCCAGATTTTTAAAGAGCAAATATATCAAACAAGACTTAACAGTCTGTTTTGAGATATTGAGCTCGGCCACTTTCACTCACAAACCAGCAAGTGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAg                                                                                                                                     <  2:887649/143‑1 (MQ=255)    ttGATCCAGATTTTTAAAGAGCAAATATATCAAACAAGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGc                                                                                                                                  >  2:471076/1‑143 (MQ=255)    ttGACCCAGATTTTTAAAGAGCAAATATATCAAACAAGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGc                                                                                                                                  <  2:549489/143‑1 (MQ=255)       aTCCAGATTTTTAAAGAGCAAATATATCAAACAAGACTTAACAGTCTGTTTTGAGATATTGAGTTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGGGAAGGGGCgtg                                                                                                                               >  1:51461/1‑141 (MQ=255)         ccAGATTTTTAAAGAGCAAATATATCAAACAATACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGgtgt                                                                                                                             >  2:977812/1‑143 (MQ=255)          cAGATTTTTAAAGAGCAAATATATCAAACAAGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTc                                                                                                                            >  2:510494/1‑143 (MQ=255)           aGATTTTTAAAGAGCAAATATATCAAACAAGATTTAGCGTTCTGGTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAGCCAGCAAGTGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTcc                                                                                                                           <  1:960245/143‑1 (MQ=17)              tttttAAAGAGCAAATATAGCAAACGAGACTTACCAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCGCAACCCAGCAAGGGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTgg                                                                                                                        <  1:219114/143‑1 (MQ=18)               ttttAAAGAGCAAATATATCAAACAAGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTCTCCTggg                                                                                                                       >  2:425054/1‑143 (MQ=255)                tttACAGAGGAAATATATCAAACAAGACGTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAGCCGGCAGGTGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGc                                                                                                                      <  1:325335/143‑1 (MQ=17)                tttAAAGAGCAAATATATCAAACAAGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGc                                                                                                                      <  2:874148/143‑1 (MQ=255)                   aaaGAGCAAATATATCAAACAAGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCC‑‑TAGGGGGTTCGAACCCCTGTTACCGCCGGGAAAGGGCGGTGTCCGGGGCctc                                                                                                                   >  1:456747/1‑143 (MQ=255)                     agtgCAAATATTTCAAACAAGACGTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCATGTGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTa                                                                                                                 <  1:922761/140‑1 (MQ=255)                     agagCAAATATATCAAACAAGACTTAACAGTCTGTTTTGAGATAGTGAGGTCGGCGACTTTTGCTGGAAAGCCCACAAAGGGCGTGCAGTTTTGTGGA‑TC‑AACCGCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTa                                                                                                                 <  2:458563/143‑1 (MQ=12)                            atatatCAAACAAGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAg                                                                                                          <  2:535367/143‑1 (MQ=255)                            atatatCAAACAAGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAg                                                                                                          <  2:529201/143‑1 (MQ=255)                                   aaaCAAGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGacac                                                                                                   <  2:145857/143‑1 (MQ=255)                                            ttAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGc                                                                                          >  1:497338/1‑143 (MQ=40)                                                  gTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGACAGGGCGGTGTCCTGGCCCTCTAGACGAAGGGGACACGAAAATTGCTTATCa                                                                                    >  1:60702/1‑143 (MQ=25)                                                   tCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGCAAATTGCttcccac                                                                                   >  2:309540/1‑138 (MQ=255)                                                       ttttGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGt                                                                               >  2:961573/1‑143 (MQ=32)                                                       ttttGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGt                                                                               >  2:837152/1‑143 (MQ=32)                                                          tGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGc                                                                            <  2:822314/143‑1 (MQ=32)                                                          tGAGATATTGACGTCGGCGACTTTCACTCACAAACCAGTAAGTGGCGTCCCC‑‑TAGGGGATTCGGACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGc                                                                            <  1:935598/143‑1 (MQ=12)                                                              atatTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGa                                                                        >  1:624570/1‑143 (MQ=32)                                                              atatTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATGGCTTATCACGCGTTGCGCGa                                                                        >  1:470858/1‑143 (MQ=17)                                                                 ttggaggcGGCGACTCTCCCTCACAAACCAGCAAGTGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCAACGCGTGataa                                                                     <  2:155152/136‑2 (MQ=1)                                                                 ttGAGGTACGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGCGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCAACGCGTGataa                                                                     <  2:63748/143‑2 (MQ=11)                                                                                           tccagtcaggggCGTCCCC‑‑GCGGGGATCCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTaa                                           <  1:117462/133‑1 (MQ=1)                                                                                            cccgCAAGGGCCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGTAGGTTACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAAt                                          <  2:888838/140‑1 (MQ=1)                                                                                                   gtcgCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGc                                   <  2:282967/140‑1 (MQ=1)                                                                                                                        tcggagcccTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCTCGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTc                <  1:771321/137‑1 (MQ=0)                                                                                                                                      cctccgTGAAAGGGCGGTGTCGTGGGCCTCTAGACGAATGTGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCaa  <  2:264597/140‑1 (MQ=0)                                                                                                                                                 |                                                                                                                                    AGCTTGATCCAGATTTTTAAAGAGCAAATATATCAAACAAGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCC‑‑TAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAA  >  NC_000913/2729268‑2729541

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.