New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2729403	33 (0.580)	9 (0.170)	6/272	5.8	22.1%	noncoding (40/76 nt)	gltW	tRNA‑Glu
	?	NC_000913	4168403 =	32 (0.590)					noncoding (33/76 nt)	gltT	tRNA‑Glu
Rejected: Coverage evenness skew score above cutoff.

GCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGC  >  NC_000913/4168261‑4168544                                                                                                                                               |                                                                                                                                              gcggtgacgggctGGGAGTGAGTCTGACGAGAACAAGGCCGCTCGCTTTCTATTAATGAAAGCTCACCCTACACGAACATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGccc                                                                                                                                               <  1:557485/131‑1 (MQ=1)                               taagaatgCCGTTCGCTTTCTATGAAGCACAGCGTCCCCTACACGAAAATATCACGCAACGCGTGATAAGCGATTTTCGTGTCCCCCTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATccc                                                                                                                 <  1:586889/136‑1 (MQ=1)                                                    aTTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGACCAGGAGACCGCCCTTTAACGGCGGTAACAGGGGTTCGAATCCCCTACGGCGCGGCACtagtcgg                                                                                            >  1:989704/1‑137 (MQ=1)                                                         tgcaaGCTCCCCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTtgt                                                                                       <  2:507628/140‑1 (MQ=1)                                                             agatCACACTACACTATAATATCACGTAACGTGTGATAAGTACTTTGTGTATCCCCTGCGTCTAGAGGGCCAGGACACCGGCCGTGCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTgtgagt                                                                                   <  2:663543/140‑1 (MQ=1)                                                                tCACCCTACACGAAAATATCACGCCACGCGTGCTAAGCAATTTTCGTGTCCCCTTCGTCTAGAGCCACAGACCACCGCCCTTTCACGCCGGTCCCAGGGGTCCGAATCCCCTCCGGGACACAGCTTGCCgggcagtgacgaaa                                                                                >  1:380305/1‑131 (MQ=0)                                                                              aaTAGCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTa                                                                  <  2:99613/143‑1 (MQ=14)                                                                                   cACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACTGGGGTTCCAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATAtc                                                             <  2:940468/143‑1 (MQ=17)                                                                                    aCGCAACGCGTGACAAGCCATTTTCGTGTCCCCTTCGCCCAGCGGCCCAGGACACCGCCCTTTCACGGCGGTACCAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAATTCGCCGACCTTAATAtct                                                            <  2:192264/143‑1 (MQ=11)                                                                                     cGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATAtctc                                                           <  2:430644/143‑1 (MQ=32)                                                                                      gCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCAACCTTAATATCTCa                                                          >  1:624299/1‑143 (MQ=17)                                                                                            cctaagaagatgttttCGTGTCCCCGTCGTCTAGAGGCCCAGGACACCGACCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTTGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTc                                                    <  1:34488/131‑1 (MQ=11)                                                                                               gATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATACCACATAGCTCATc                                                 >  1:152083/1‑143 (MQ=255)                                                                                                  aaGCAATTCTCGTGTCCCCGGCGTCTAGAGGCCCATGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGTGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTc                                              <  1:414049/143‑1 (MQ=14)                                                                                                   aGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCg                                             <  1:178015/143‑1 (MQ=39)                                                                                                      aaTTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGt                                          <  2:435183/143‑1 (MQ=255)                                                                                                       aTTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTg                                         >  1:363187/1‑143 (MQ=255)                                                                                                             gtgtCCCCTGCGTCTAGGGGCCCAGGGCACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGttt                                   <  1:327684/143‑1 (MQ=255)                                                                                                             gtggCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGCAAGTCGCCAACCTTAATATCTCAAAACGCATCTTCGGGTGATGttt                                   <  2:188476/143‑1 (MQ=255)                                                                                                             gtctCCCCTTCGTCCAGAGGCCCAGGCCACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGCCGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGttt                                   <  1:3404/140‑1 (MQ=255)                                                                                                                  cccTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGat                              >  2:991476/1‑143 (MQ=37)                                                                                                                  cccTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGAGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAACACTCATCTTCGGGTGCTGTTTGCGat                              >  2:947315/1‑143 (MQ=255)                                                                                                                    cTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGatat                            >  2:872085/1‑143 (MQ=38)                                                                                                                     ttCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATAtt                           >  2:937372/1‑143 (MQ=39)                                                                                                                     tccGTCTGGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTTAAAACTCATCTTCGGGTGATGTTTGAGATAtt                           <  1:515003/141‑1 (MQ=255)                                                                                                                         tCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGct                       >  2:41965/1‑143 (MQ=38)                                                                                                                         tCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGAGGACGCCACGTGCTCGTTTGTGAGTGAAAGTCGCAGACCTTAATATCTCAAAACTCATCGTGGTGTGATGTTTAACATATTTGct                       >  1:309789/1‑143 (MQ=11)                                                                                                                           tAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCGCTTGCTGGTTTGTGAGTGAAAGTCGCCGGGGTTAATAGGTGAAAGCTGGTGGTCGGGGGATGGTTGAGTGATTTgatgt                     >  2:70295/1‑139 (MQ=11)                                                                                                                             gagggccaggctcgcGCTCTTTGACGGCGGTAACAGGGGTTGGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCttt                   <  1:338999/129‑1 (MQ=11)                                                                                                                             gagGCCCAGGACACCGCCCTTTAACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGGTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGGGATATTTGCTCttt                   >  2:913350/1‑143 (MQ=255)                                                                                                                              agGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTa                  <  1:210480/143‑1 (MQ=38)                                                                                                                                   cAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAAt             >  2:710706/1‑143 (MQ=39)                                                                                                                                      gACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTg          <  2:862826/143‑1 (MQ=38)                                                                                                                                          cctcccTTTCACGGCGGTAACAGTGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATc      <  2:711729/140‑1 (MQ=255)                                                                                                                                             cccTTTCGCGGCGGTACCAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGTGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAg   <  1:868174/143‑1 (MQ=255)                                                                                                                                             cccTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGAGAGTGAAACTCGCCGACCTTAATATCTCAACACTCATCTTCGGGTGATGTTTGAGACATTTGCTCTTTAAAAATATGAATCAAg   >  2:386459/1‑143 (MQ=11)                                                                                                                                              ccTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGc  >  2:972283/1‑143 (MQ=38)                                                                                                                                               |                                                                                                                                              GCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGC  >  NC_000913/4168261‑4168544

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.