| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2945952 = | 70 (1.230) | 3 (0.070) +CTTGCGAATTCAATATATTGTATGGAAATTCAG |
3/218 | 6.3 | 5.3% | noncoding (59/97 nt) | RIP206 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site | RIP206 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | 3676120 = | NA (NA) | noncoding (1/161 nt) | RIP264 (repetitive extragenic palindromic) element, contains 3 REP sequences and 1 IHF site | RIP264 (repetitive extragenic palindromic) element, contains 3 REP sequences and 1 IHF site | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GCCATATATCGCAGCCTGGTTGCAGACTAACTACGGGCTAGGTGCGGTGGGGTTATATCTGGCGGCGATGGCTGGCTTGACGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCC > NC_000913/3675978‑3676262 | gcCATATATCGCAGCCTGGTTGCAGACTAACTACGGGCTAGGTGCGGTGGGGTTATATCTGGCGGCGATGGCTGGATTCCTGAGATGCTTCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAg > 2:723223/1‑143 (MQ=255) cATATATCGCAGCCTGGTTGCAGACTAACTACGGGCTAGGTGCGGTGGGGTTATATCTGGCGGCGATGGCTGGCTTGACGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGcc > 2:488578/1‑143 (MQ=255) tatatCGCAGCCTGGTTGCAGACTAACTACGGGCTAGGTGCGGTGGGGTTCTATCTGGAGGCGCAGGCTGGCTTGACGTTAATCGCCCTGCTGCTGACCCCTGAGACGCGACCTCAGTCGTGGTGATAAGCGTGAAAAGCCtc > 1:165145/1‑142 (MQ=255) atacCGCAGCCTGGTGGCAGACTAACTACGTGCTAGGTGCGGTGGGGTTATATCTGGCGGCGATGGCTGGCTTGACGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGa < 2:669366/143‑1 (MQ=255) tCGCAGCCTGGTTGCAGACTAACTACGGGCTAGGTGCGGTGGGGTTATATCTGGCGGCGATGGCTGGCTTGACGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGGCGTTGTAATAAGAGTGAAGAGCCTGATgc > 2:604459/1‑143 (MQ=255) gCAGCCTGGTTGCAGACTAACTACGGGCTAGGTGCGGTGGGGTTATATCTGGCGGCGATGGCTGGCTTGACGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGACAAGCCTGATgcgc > 2:683257/1‑143 (MQ=255) ttGCAGACTAACTACGGGCTAGGTGCGGTGGGGTTATATCTGGCGGCGATGGCTGGCTTGACGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCttct > 2:166727/1‑141 (MQ=255) gACTAACTACGGGCTAGGTGCGGTGGGGTTATATCTGGCGGCGATGGCTGGCTTGACGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCGTAGCAGGc > 1:40929/1‑143 (MQ=255) gACTAACTACGGGCTAGGTGCGGTGGGGTTATATCTGGCGGCGATGGCTGGCTTGACGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGGCGTTGTAATACGAGTGAAAAGCCTGACGCGCTACGCTTCTCAggg > 2:459561/1‑142 (MQ=255) taCGGGCTAGGTGCGGTGGGGTTATATCTGGCGGCGATGGCTGGCTTGACGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGCCCTGAAtt > 1:295196/1‑143 (MQ=255) ggCTAGGTGCGGTGGGGATATATCTGGCGGCGATGGCTGGCTTGACGTTAATCGCCCTGCTGCTGACACATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTcga > 1:861907/1‑141 (MQ=255) tAGGTGCGGTGGGGTTATATCTGGCGGCGATGGCTGGCTTGACGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATAc > 1:65980/1‑143 (MQ=255) gTGGGGTTACATCTGGCGGCGATGGCTGGCGTGACGTTAAGCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGGGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATAtt < 1:68424/143‑1 (MQ=255) gggTTATATCTGGCGGCGATGGCTGGCTTGACGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTACTAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGACTGAGTTTCCATACAAAATATTGaa > 1:879481/1‑143 (MQ=255) gggTTATATCTGGCGGCGATGGCTGGCTTGACGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGaa < 2:267539/143‑1 (MQ=255) ttATATCTGGCGGCGATGGCTGGCTTGACGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTc > 2:202761/1‑143 (MQ=255) ggcgACGGCTGGCTGGGCGTGCATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAAGTTCCATACAATATATTGAATTCGCAAGGATTTg < 2:159068/143‑1 (MQ=255) cgATGGCTGGCTTGACGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTa < 2:719967/143‑1 (MQ=255) tggctggcTTGACGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGc > 2:396439/1‑143 (MQ=255) ggcttgttTGACTTTAATCGCTCTGCTGCTGACCCATGAGACTCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGcc < 1:372728/143‑1 (MQ=39) ctggctTGACGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTACTAAGAGTCAAAAGCATGCTGAGCTAAGCATAGCAGCCCTCAACTTACACACCATAACTTGAATTAGCCCCGCTTTGCAGGccac > 1:395389/1‑141 (MQ=255) ctTGACGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGCTaa > 1:773417/1‑143 (MQ=255) ttGACGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCCGGCCTGCATTTCCATACAATATATTGAATTCGCAAAGATTTGTAGGCCGGATAAg > 2:533326/1‑143 (MQ=255) ttGACGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGGCGGATAAg > 1:768599/1‑143 (MQ=255) ttGACGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAg > 2:833072/1‑143 (MQ=255) tGACGTTAAGCGCCCTGCTGCTGACCCATGCGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAgg < 1:782583/143‑1 (MQ=255) tGACGTCAATCGCCCTGCTGCTGACCGATGGGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAgg < 1:624542/143‑1 (MQ=255) aCGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCg < 2:514391/143‑1 (MQ=255) aCGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCg > 2:711720/1‑143 (MQ=255) gTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGtt > 2:619002/1‑143 (MQ=255) gTTAATCGCCCTGCTGCTGACACATGAGAAGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTACATACAATATATTGAATTCGCAAGGATTTGTAGCGCAGACAAGGCGtt > 1:194604/1‑143 (MQ=39) gctgctgACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATcc > 2:779495/1‑143 (MQ=255) tgACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAt > 2:394138/1‑143 (MQ=255) gACCCATGAGACGCGACATCAGTTGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTCTCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTCTTAGGCCCGCGAACGCGTTCACGCCTCATCCGGCATg > 1:982600/1‑143 (MQ=38) cccTTGAGCCGCTACATCACTCGTTGCAACGAGAGTGAAAAGCCTGATGCGCTACGCCGATCAGGCCTGAATTTCCATACAAGAGATTGAAGTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGaa < 2:68443/143‑1 (MQ=21) aTGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGCTTTGTAGGCCGGATAACGCGTTCACGCCGCATCCAGCATGAACaa > 1:670936/1‑143 (MQ=255) tGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACaaa < 2:165145/143‑1 (MQ=255) gcggcgcgACAGCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCTCTACGCTTATCAGGCCTGAATTCCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAg < 2:260471/139‑1 (MQ=255) gcgACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGCCTATATATACAATATATTGAGATCGCAAGGCTTTGTAGGCCGGATAAAGCGTTCCCGCCGCATCCGGCATGAACAAAGcacca > 1:395018/1‑141 (MQ=21) gcgACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCacac > 1:224041/1‑143 (MQ=255) gACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGTTTGCATCACGATTTAGTATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACtt > 2:185663/1‑143 (MQ=21) agcAGTCTTTGTAATAAGAGTGAGAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATCTATTGCATTCTCTATCATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGc < 1:652059/141‑1 (MQ=21) agcAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGc < 2:65980/141‑1 (MQ=255) tCAGCCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGcc < 2:554968/143‑1 (MQ=255) gTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAAt > 2:815132/1‑143 (MQ=255) ttGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGACTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGCACAAAGCACCCTTGGccggcactc > 2:384256/1‑136 (MQ=25) tGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGAATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCt < 2:834649/143‑1 (MQ=255) gTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTa > 2:349271/1‑143 (MQ=255) taataaGAGTGAAATGCCTGTTGCGCTTCTCTTATCAGGCCTGAATTTCCATACAATATAGTGAATGCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTaa < 2:593745/143‑1 (MQ=25) taataaGAGTGAAAAGCCTGATGCGCTACGCGTAGCAGGCCTGAATTTCCATACAATATATTCAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTaa < 2:498720/143‑1 (MQ=255) ataaGCGGGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATGTCCATACAATATATTGAATTCGCAACGATGAGGACGCCGTATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAAt < 1:394299/143‑1 (MQ=25) ataaGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAAt > 2:956543/1‑143 (MQ=255) gagTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCCCACTTTGCCAACAATCTCAATCTGt > 2:121358/1‑143 (MQ=255) agTTAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACACTGAACACTTTGCCTACAATCTAAATCTGtt < 1:353660/143‑1 (MQ=25) agTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGtt < 2:945838/143‑1 (MQ=255) agTGAAAAGCCTGAGGCGCTACGCGTATCAGGCTCGAATTCCCATACAAGATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACACTCTAAATCTGtt < 1:871824/143‑1 (MQ=25) gAAAAGCCTGATGCGCTACGCTTATCAGGTCGTAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTaa < 1:202761/143‑1 (MQ=255) aaaaGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAAt < 2:224041/143‑1 (MQ=255) aaaaGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAAt > 2:92602/1‑143 (MQ=255) aaaaGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCCGCCTGAACAAAGCACACTTTGCCAACCATCTAAATGTGTTTTAt > 2:341831/1‑143 (MQ=25) gCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAAGATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGcc < 2:672593/143‑1 (MQ=255) | GCCATATATCGCAGCCTGGTTGCAGACTAACTACGGGCTAGGTGCGGTGGGGTTATATCTGGCGGCGATGGCTGGCTTGACGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCC > NC_000913/3675978‑3676262 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |