New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 273955 =NA (NA)43 (1.110) 35/284 0.1 95.6% intergenic (+1/+146) ykfC/insH1 CP4‑6 prophage, conserved protein,Phage or Prophage Related/IS5 transposase and trans‑activator
?NC_000913 618513 = 2 (0.050)coding (260/1134 nt) fepE regulator of length of O‑antigen component of lipopolysaccharide chains

GGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/274095‑273955
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTAAGCTTCGTGTGCTGGATCTGGATATCAAAATTGATCGTACAGAAGCATTTAACCTGTTTATCAAGAAGTTTCAGTCGGTTAGCTTGCTGGAAGAGTACCTGCGTTCATCACCTTATGTGATGGACCAATTAAAAGAGGC  >  NC_000913/618513‑618654
                                                                                                                                                                                                                                                                                           
tgggctcactCCTTAAATGTCGAAGACACGGTCTAAAGAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATCACTGACTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCT                                                                                                                                              <  1:52259/133‑1
 ggcATAACCACTTAAATGGCGAAGACACGGTCTAAACAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTA                                                                                                                                             <  2:662925/140‑1
                      AAGGAACGGGCGAAATGGGCGGGTGCGAGGCATGTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGCAGCATTTCACCGTTTATTCGCACCTTCCCTAAGCTTCGTGTGCTGGATCTGG                                                                                                                        <  2:461683/143‑1
                      AAGAAACGGTCTAAATAGGCTGCTTCAAGGCATTTACGGGAGAAACAATCGGCTCAAACATGAAGAAATGAAATGACTGCGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGCTTCGTGTGCTGGATCTGG                                                                                                                        <  2:271561/143‑1
                      AAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTAATTCGCACCGTCCACAAGCTTCGTGTGCGGGATCTGG                                                                                                                        >  1:475620/1‑143
                      AAGAAACGGTCGAAATAGGCTGGTTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGGGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGCTTCGTGTGCTGGATCTGG                                                                                                                        <  1:119356/143‑1
                                   AATAGGCTGATTCAAGGCATTTACGGGAGAAAAAAACGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGCTTCGTGTGCTGGATCTGGATATCAAActcga                                                                                                           >  1:540683/1‑138
                                    ATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGCTTCGTGTGCTGGATCTGGATATCAAAATTGAT                                                                                                          <  2:333928/143‑1
                                        GCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTACCTAAGCGTAGTGTGCTGGGTCTGGCTACCCAAAGCGATCGca                                                                                                      >  1:637263/1‑141
                                         CTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGCGTCGGCCGAGAAGGATTTCCCCGCTTATTCGCACCTTCCCTACGCTTCGTGTGCTGGATCTGGATATCAGAATTGATCGTcc                                                                                                     >  2:77630/1‑141
                                           GATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCGGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGCTTCGTGTGCTGGATCTGGATATCAAAATTGATCGTACAG                                                                                                   >  2:438761/1‑143
                                             TTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGCTTCGTGTGCTGGATCTGGATATCAAAATTGATCGTACAGAA                                                                                                 <  2:436844/143‑1
                                                 AGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGACATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTACGCTTCGTGTGCTGGATCTGGATATCAAAACTGATCGCACAGAAGCAa                                                                                             >  1:127789/1‑142
                                                     ATTTACGGGAGAAAAAAACGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGCTTCGTGTGCTGGATCTGGATATCAAAATTGATCGTACAGAAGCATTTAA                                                                                         <  2:411835/143‑1
                                                      TTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGCTTCGTGTGCTGGATCTGGATATCAAAATTGATCGTACAGAAGCATTTAAC                                                                                        >  2:581112/1‑143
                                                       TTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGCTTCGTGTGCTGGATCTGGATATCAAAATTGATCGTACAGAAGCATTTAACC                                                                                       <  2:309814/143‑1
                                                          CGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGCTTCGTGTGAACAGCCTTAAGAGCAAAATTGATCGTACAGAAGCATTTAACCTGT                                                                                    >  1:652386/1‑143
                                                           GGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCATAAGCTTCGTGTGATGGATCTGGATATCAAACTTGAACGTGTAGAAGCAGTTAACATGTT                                                                                   >  1:538968/1‑143
                                                                 AAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGCTTCGTGTGCTGGATCTGGATATCAAAATTGATCGTACAGAAGCATTTAACCTGTTTATCAA                                                                             <  2:24594/143‑1
                                                                 AAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGCTTCGTGTGCTGGATCTGGATATCAAAATTGATCGTACAGAAGCATTTAACCTGTTTATCAA                                                                             <  1:607890/143‑1
                                                                    AATGGGCTGAAAGCTGAAGAGATGGACTGACTGAGTCAGCCGAGAAGAATTTCCCCGGTTATTCGCACCTACCCTAAGCTTCGGGGGCTGGATCTGGATATCAAAATTGATCGTACAGAAGCATGTAACCTGTGTATCAAGAA                                                                          <  1:25810/143‑1
                                                                     ATCGGCTCAATCATGAAGAAATGAAATTACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGCTTCGTGTGCTGGATCTGGATATCAAAATTGATCGTACAGAAGCATTTAACCTGTTTATCAAGAAG                                                                         <  1:207409/143‑1
                                                                     ATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTACTCGCACCTTCCCTAAGCTTCGTGTGCTGGATCTGGATATCAAAATTGATCGTACAGAAGCATTTAACCTGTTTATCAAGAAG                                                                         <  2:28899/143‑1
                                                                        GGCTCAAACATGAAGAACTGAAAGGACTGAGTCAGCCGAGAAGACTTTCCCCGCTGATTCGCACCTTCGCTAAGCTTCGTGTGCTGGATCTGGATATCAAAATTGATCGTACAGAAGCATTTAACCTGTTTATCAAGAAGTTT                                                                      <  1:192420/143‑1
                                                                          CTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGCTTCGTGTGCTGGATCTGGATATCAAAATTGATCGTACAGAAGCATTTAACCTGTTTATCAAGAAGTTTCA                                                                    <  1:281615/143‑1
                                                                             AAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGCTTCGTGTGCTGGATCTGGATATCACAATTGATCGTACAGAAGCATTTAACCGGGTTCTCCAGAAGTTGCAGTg                                                                 >  1:438208/1‑142
                                                                                CATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGCTTCGTGTGCTGGATCTGGATATCAAAATTGATCGTACAGAAGCATTTAACCTGTTTATCAAGAAGTTTCAGTCGGT                                                              <  2:229462/143‑1
                                                                                 ATGAAGAGATGAAATGACTGAGTCAGCCGAGAAGACTTTCCCCGCTTATTCGCACCTTCCCTAAGCTTCGTGTGCTGGATCTGGATATCAAAATTGATCGTACAGAAGCATTTAACCTGTTTATCAAGAAGTTTCAGTCGGTT                                                             <  2:213919/143‑1
                                                                                              ATGACTGGGTGAGCAGAGGAGGATTTCCCCGCTTGTTCGCACCTTCCGTAAGCGTCGTGTGCTGGATCTGGATATCAAAATTGATCGGACAGAAGCATTTAACCTGTTTATCAAGAAGTTTCAGTCGGTTAGCTTGCTGGAAG                                                <  1:430774/143‑1
                                                                                              ATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGCTTCGTGTGCTGGATCTGGATATCAAAATTGATCGTACAGAAGCATTTAACCTGTTTATCAAGAAGTTTCAGTCGGTTAGCTTGCTGGAAG                                                >  2:327756/1‑143
                                                                                                   TGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGCTTCGTGTGCTGGATCTGGATATCAAAATCGCTCGTACAGAAGCATTTAACCTGTTTATCAAGAAGTCTCAGACGATTCGCCTGaggccaacgtac                                           >  1:618254/1‑131
                                                                                                       TCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGCTTCGTGTGCTGGATCTGGATATCAAAATTGATCGTACAGAAGCATTTAACCTGTTTATCAAGAAGTTTCAGTCGGTTAGCTTGCTGGAAGAGTACCTGC                                       >  2:9293/1‑143
                                                                                                         AGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGCTTCGTGTGCTGGATCTGGATATCAAAATTGATCGTACAGAAGCATTTAACCTGTTTATCAAGAAGTTTCAGTCGGTTAGCTTGCTGGAAGAGTACCTGCGT                                     <  1:152752/143‑1
                                                                                                              AGAAGTATTTCCCCGCGTATTCGCACCTTCCCTAAGCTTCGTGTGCTGGATCTGGATATCAAAATTGATCGTACAGAAGCATTTAACCTGTTTATCAAGAAGTTTCAGTCGGTTAGCTTGCTGGAAGAGTACCTGCGTTCATC                                <  2:88521/143‑1
                                                                                                              AGAAGAATTGCCCCGCTTATTCGCACCTTCCCTAAGCTTCGTGTGCTGGATCTGGATATCAAAATTGATCGTACAGAAGCATTTAACCTGTTTATCAAGAAGTTTCAGTCGGTTAGCTTGCTGGAAGAGTACCTGCGTTCATC                                <  1:94264/143‑1
                                                                                                               gaacagTTTCCCCGCCTATTCGCACCTTCCCTAAGCTTCGTGTGCTGGATCTGGATATCAAAATTGATCGTACACAAGCATTTAACCTGTTTATCAAGAAGTTTCAGTCGGTTAGCTTGCTGGAAGAGTACCTGCGTTCATCA                               <  1:136592/137‑1
                                                                                                                  GAATTTCCCCGCTTATTCGCACCTTCCCTAAGCTTCGTGTGCTGGATCTGGATATCAAAATTGATCGTACAGAAGCATTTAACCTGTTTATCAAGAAGTTCCATTCGGTTAGCTTGCTGGAAGAGTACCTGCGTTCATCACCT                            >  2:213451/1‑143
                                                                                                                     ttgCCCCGCTTAGTCGCACCTTCCCTAAGCTTCGTGTGCTGGATCTGGATATCAAAATTGATCGTACAGAAGCATTTAACCTGTTTATCAAGAAGTTTCAGTCGGTTAGCTTGCTGGAAGAGTACCTGCGTTCATCACCTTAT                         <  1:122125/140‑1
                                                                                                                           ggaTTATTCGCACCTTCTCTAAGCTTCGTGTGCTGGATCTGGATATCAAAATTGATCGTACAGAAGCATTTAACATGTTTATCAAGAAGTTTCAGTCGGTTAGCTTGCTGGAAGAGTACCTGCGTTCATCACCTTATGTGATG                   <  1:306573/140‑1
                                                                                                                                 TTCGCACCTTCCCTAAGCTTCGTGTGCTGGATTTGTTTACCAAAATTGATCGTACAGAAGCATTTAACCTGTTTATCAAGAAGTTTCAGTCGGTTAGCTTGCTGGAAGAGTACCTGCGTTCATCACCTTATGTGATGGACCAA             >  1:370823/1‑143
                                                                                                                                    GCACCTTCCCTAAGCTTCGTGTGCTGGATCTGGATATCAAAATTGATCGTACAGAAGCATTTAACCTGTTTATCAAGAAGTTTCAGTCGGTTAGCTTGCTGGAAGAGTACCTGCGTTCATCACCTTCTGTTATGGCCCACTTA          >  2:365117/1‑143
                                                                                                                                         tgCCCTAAGCTTCGTGTGCTGGATCTGGATATCAAAATTGATCGTACAGAAGCATTTAACCTGTTTATCAAGAAGTTTCAGTCGGTTAGCTTGCTGGAAGAGTACCTGCGTTCATCACCTTATGTGATGGACCAATTAAAAGA     <  1:500683/141‑1
                                                                                                                                            CCTAAGCTTCGTGTGCTGGATCTGGATATCAAAATTGATCGTACAGAAGCATTTAACCTGTTTATCAAGAAGTTTCAGTCGGTTAGCTTGCTGGAAGAGTACCTGCGTTCATCACCTTATGTGATGGACCAATTAAAAGAGGC  >  1:450047/1‑143
                                                                                                                                                                                                                                                                                           
GGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/274095‑273955
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTAAGCTTCGTGTGCTGGATCTGGATATCAAAATTGATCGTACAGAAGCATTTAACCTGTTTATCAAGAAGTTTCAGTCGGTTAGCTTGCTGGAAGAGTACCTGCGTTCATCACCTTATGTGATGGACCAATTAAAAGAGGC  >  NC_000913/618513‑618654

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.