New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1207805	39 (1.010)	4 (0.120)	4/252	4.4	11.0%	coding (305/630 nt)	stfP	e14 prophage, uncharacterized protein
	?	NC_000913	= 1209602	30 (0.870)					pseudogene (18/501 nt)	stfE	pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGG  >  NC_000913/1207669‑1207946                                                                                                                                         |                                                                                                                                              ggCCTGGAGAAGGGGCTGCACGACCAGTTACTTACCGCACTGCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCaaa                                                                                                                                         <  2:105079/142‑1 (MQ=255) aGCCTGGAGAAGGAGCGGCACGAGCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCaaa                                                                                                                                         <  2:518913/143‑1 (MQ=255)  gCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACAGTGCAAACGCCGCACGAAAACCTCGGCTTGGGCGACAGAGCaaaa                                                                                                                                        >  2:107576/1‑143 (MQ=17)     tGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTCTGGCGATACTGACTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAggctctgcatta                                                                                                                                     <  2:94775/143‑11 (MQ=17)       gagaAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCGTGGTTTGGGAGAAGGAGCAAAACTCaa                                                                                                                                   >  2:555005/1‑143 (MQ=255)        agaAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAAt                                                                                                                                  >  2:404378/1‑143 (MQ=255)             gggCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGACTCCGTTTGGCGATATTCAATCCGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATgcacc                                                                                                                             >  2:491994/1‑141 (MQ=255)             gggCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGAGGGCACTGTGCAAACGGCTCGCGAAAACCTTGGTTCGGTAGCGGGAGCAAACCTCAATgcagc                                                                                                                             >  2:71806/1‑143 (MQ=18)                   cACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGc                                                                                                                       >  2:492444/1‑143 (MQ=255)                    aCGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCt                                                                                                                      >  2:414092/1‑143 (MQ=255)                             tactgacCGCACGTCGCGCGCGGCTGGTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGa                                                                                                             <  2:399638/143‑1 (MQ=255)                                gcagcgcgcgaagtgcgcTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGc                                                                                                          >  2:374029/15‑143 (MQ=255)                                 tacCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCa                                                                                                         <  2:566041/143‑1 (MQ=255)                                        cgcggcgcgcTGCTGGTAAGCCGCAAGAATCCGTTTGGCGATATGCAATCGGATGGCCCTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGttt                                                                                                  <  2:441120/139‑1 (MQ=25)                                            gcgcgcTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGCCGCCCCGGTTTCATa                                                                                              >  2:632044/1‑143 (MQ=255)                                            gcgcgcTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATa                                                                                              <  2:433322/143‑1 (MQ=255)                                            gcgcgcTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCCACATTAGGACGCACCGGTTTCATa                                                                                              >  2:158959/1‑143 (MQ=255)                                                 ctgctgTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGGTCGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGCTTTCATAGCtat                                                                                         >  1:38873/1‑143 (MQ=255)                                                 ctgctaTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACAGTAGGACGCACCGGAGTGAGAGCtat                                                                                         >  1:558436/1‑143 (MQ=21)                                                   gctgTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACAGGATGAAAAGCTATAc                                                                                       >  1:194670/1‑143 (MQ=25)                                                              gCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGCCTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGTTTTCATAGCTATATCTGTTCTGAtt                                                                            >  2:125539/1‑143 (MQ=37)                                                                   aaTCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATtggtgg                                                                       >  2:426428/1‑143 (MQ=255)                                                                     accGTTTGGCGATATCAAATCGGATGGCACTGTGCACACGGCTCTAGAAAACCTCGGTATGGGAGAAGGAGCAAAACTCAATGCAGCCACGGCTACAATAGGACGCACCGGTTTCATAGCTATACCGGATAAGACtggcggga                                                                     >  1:643015/2‑141 (MQ=255)                                                                       cgcttGGCGAGATTAAAGCGGATGGCACTGTGCAGGCGGCTCACGTAAACCGGGGTTTGGGAGAAGGAGCAAAGCTCAATGCATCAGCTGCTACAGGATGATGTTCCGGTTTGAGAGCTATACCGGTTATGATTGGTGGTAtt                                                                   <  1:265614/140‑1 (MQ=255)                                                                        gTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTg                                                                  >  2:568503/1‑143 (MQ=255)                                                                         tttGGCGATACCAAATCGGAGGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGa                                                                 <  1:535101/143‑1 (MQ=255)                                                                                     aaaTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATTGCTATACCGGTTATGATTGGTGGTATTGAGCATTCAGTAAt                                                     >  2:117532/1‑143 (MQ=255)                                                                                         cGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCATTGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGGATGGTGGTATTGAGCAATCAGGACTCAtt                                                 >  1:112754/1‑143 (MQ=39)                                                                                           gATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATCCCGGTGATGATTGGTGGTATGGAGCCATTAGAAAGCATTCa                                               >  1:612752/1‑143 (MQ=38)                                                                                           gATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCa                                               >  2:674382/1‑143 (MQ=255)                                                                                                 aCTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTgggg                                         <  2:520609/143‑1 (MQ=255)                                                                                                     tgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTAAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTgg                                     >  2:639856/1‑143 (MQ=255)                                                                                                           cGGCTCTCGAAAACCGTGGTTTGGGAGAAGGAGCAAAACTCAGTGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGcc                               <  1:218139/143‑1 (MQ=255)                                                                                                             gCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGCACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGc                             <  2:666885/143‑1 (MQ=255)                                                                                                                 tcgggcgcgggggTTGGGGAGAGGGAGTTAAACTCATTGCAGTAACGGCTACATTAGGACGCACCGGTTTCATACCTATACTGGGTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCaaaa                         <  1:71806/132‑1 (MQ=255)                                                                                                                 tcGAAAACCTTTGGTGGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGAAATTATTCAGTGGGGGTGGAATGCCGCaaaa                         <  1:589152/143‑1 (MQ=255)                                                                                                                 tcGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCaaaa                         <  2:462116/143‑1 (MQ=255)                                                                                                                         cTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTAGGATTGGTGGTATTGAGCCATCAGTAATCATTCAGTGGGGGGGGGCTGCCGCAAAAGGATCTgg                 >  2:292125/1‑142 (MQ=255)                                                                                                                                 ggtagaAGGAGCAAAATTCATTGCAGCAACGTCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTgggg         <  2:21338/140‑1 (MQ=255)                                                                                                                                        ggAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGCATGCCGCAAAAGCCTCTGCCTCTGGGGGGGATgc  >  1:83955/1‑142 (MQ=255)                                                                                                                                         |                                                                                                                                              AGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGG  >  NC_000913/1207669‑1207946

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.