| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3567518 = | 49 (1.270) | 3 (0.080) | 3/272 | 5.3 | 6.0% | coding (515/1434 nt) | glgA | glycogen synthase |
| ? | NC_000913 | 3567557 = | 47 (1.270) | coding (476/1434 nt) | glgA | glycogen synthase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GATCTCGCGAGCGTAGGTTGGACTGACCGCCGTAATGTGATCGGCATAGTA‑CAGACCGGCCTTCAGGAAAGAGATTTGTCCGTTGAATTCCAGCCCATGAATATTAAAGAATGACCATGGCAATTGGATGTCATTCATGTGATGTGCATAAAACATGCCTTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGACGCCCGCGCGCCGCCAGATACGCAGGCGCAAGGCCTGCATGCCAGTCGTGCGCATGCACCACATCAGGACGCCAGAATGGG > NC_000913/3567376‑3567658 | gATCTCGCGAGCGTAGGTTGGACTGACCGCCGTAATGTGATCGGCATAGTA‑CCGACCGGCCTTCAGGAAAGAGATTTGTCCGTTGAATTCCAGCCCATGAATATTAAAGAATGACCATGGCAATTGGATGTCATTCatgtgat > 1:274095/1‑143 (MQ=255) cgAGCGTAGTTTGGACTGTCTGCCGTACTGGGATCGGCATAGTA‑CAGACCGGCCTTCAGGAAAGAGATTTGTCCGTTGAATTCCAGCTCATGAATATTAAAGAATGACCATTGCAATTGGATGTCATTCATGTGATGTGCATa < 1:475336/143‑1 (MQ=255) gCGTAGGTTGGACTGACCGCCGTAATGTGATCGGCATAGTA‑CAGACCGGCCTTCAGGAAAGAGATTTGTCCGTTGAATTCCAGCCCATGAATATTAAAGAATGACCATGGCAATTGGATGTCATTCATGTGATGTGCATaaaa > 2:163073/1‑143 (MQ=255) tAGGTTGGACTGACCGCCGTAATGTGATCGGCATAGTA‑CAGACCGGCCTTCAGGAAAGAGATTTGTCCGTTGAATTCCAGCCCATGAATATTAAAGAATGACCATGGCAATTGGATGTCATTCATGTGATGTGCATAAAACAt > 2:290032/1‑143 (MQ=255) gTTGGACTGACCGCCGTAATGTGATCGGCATAGTA‑CAGACCGGCCTTCAGGAAAGAGATTTGTCCGTTGAATTCCAGCCCATGAATATTAAAGAATGACCATGGCAATTGGATGTCATTCATGTGATGTGCATAAAACATGcc > 1:392774/1‑143 (MQ=255) gTTGGACTGACCGCCGTAATGTGATCGGCATAGTA‑CAGACCGGCCTTCAGGAAAGAGATTTGTCCGTTGAATTCCAGCCCATGAATATTAAAGAATGAACAAAAGGTGAGGATGTCATTCATGTGATGTGCATAAAACATGcc > 2:122601/1‑143 (MQ=255) gTTGGACTGACCGCCGTAATGTG‑CCAGCCCACTAGCGCTCTGGCCTTCAGGACAGAGATTTGTCCGTTGAATTCCAGCCCATGAATATTAAAGAATGACCATGGCAATTGGATGTCATTCCTGTGATGTGCATCAAACATGcc > 1:49747/1‑143 (MQ=255) aCTGACCGCCGTAATGTGATCGGCATAGTA‑CAGACCGGCCATCACGAAAGAGATTTGTCCGTTGAATTCCAGCCCACGAATATTAAAGAATGACCATGGCAATTGGATGCACTTCATGTGATGTGCATAACACAGACCTTGAt > 1:475547/1‑143 (MQ=255) cTGACCGCCGTAATGTGATCGGCATAGTA‑CAGACCGGCCTTCAGGAAAGAGATTTGTCCGTTGAATTCCAGCCCATGAATATTAAAGAATGACCATGGCAATTGGATGTCATTCATGTGATGTGCATAAAACATGCCTTGATa < 2:47607/143‑1 (MQ=255) cTGACCGCCGTAATGTGATCGGCATAGTA‑CAGACCGGCCTTCAGGAAAGAGATTTGTCCGTTGAATTCCAGCCCATGAATATTAAAGAATGACCATGGCAATTGGATGTCATTCATGTGATGTGCATAAAACATGCCTTGATa < 2:504831/143‑1 (MQ=255) gccgccgTAATGTGATCGGCATAGTA‑CACACCGGCCTTCAGGAAAGAGATTTGTCCGTTGAATTCCAGCCCATGAATATTAAAGAATGACCATGGCAATTGGATGTCATTCATGTGATGTGCATAAAACATGCCTTGATAGGc < 2:27377/142‑1 (MQ=255) aCCGCCGTAATTTGTTCGGCATAGTA‑CAGACCGGCCTTCAGGAACGAGATTTGCCCGTTGAATTCCAGCCCATGAATATTACAGAATGACCATGGCAATTGGATGTCATTCATGTGATGTGCATAAAACATGCCTTGATAGGc < 1:525931/143‑1 (MQ=255) aCCGCCGTAATGTGATCGGCATAGTA‑CAGACCGGCCTTCAGGAAAGAGATTTGTCCGTTGAATTCCAGCCCATGAATATTAAATAATGACCATGACAAGTGGATGTCATTAATGTGATGTTCATAAAACATGCCtaaataagc > 2:539147/1‑135 (MQ=255) gccgTAATGTCATCGGCATAGTA‑CAGACCGGCCTTCACGAAAGAGATTTGTCCGTTGAATTCCAGCCCATGCATATTAAAGAATGACCATGGCAATTGGATGTCATTCATGTGATGTGCATAAAACACCCCTTGCTAGGCCAg > 1:641925/1‑143 (MQ=255) ccgTAATGTGATCGGCATAGTA‑CAGACCGGCCTTCAGGAAAGAGATTTGTCCGTTGAATTCCAGCCCATGAATATTAACGAATGACCATGGCAATTGGATGTCATTCATGTGATGTGCATAAAACATGCCTTGATAGGCCAgg < 2:459455/143‑1 (MQ=255) gATCGGCAGAGTA‑CAGACCGGCCTTCAGGAAAGAGATTTGTCCGTTGAATTCCAGCCCATGAATATTAAAGAATGACCATGGCAATTGGATGTCATTCATGTGATGTGCATAAAACATGCCTTGATAGGCCAGGTTGTGcaca < 2:444229/143‑1 (MQ=255) cATAGTA‑CAGACCCGCCTTCAGGAAAGAGATTTGTCCGTTGAATTCCAGCCCATGAATATTAAAGAATGACCATGGCAATTGGATGTCATTCATGTGATGTGCATAAAACATGCCTTGATAGGCCAGGTTGTGCACAGTAAac < 2:35930/143‑1 (MQ=255) aTAGTA‑CAGACCGGCCTTCAGGAAAGAGATTTGTCCGTTGAATTCCAGCCCATGAATATTAAAGAATGACCATGGCAATTGGATGTCATTCATGTGATGTGCATAAAACATGCCTTGATAGGCCAGGTTGTGCACAGTAAaca < 2:546791/143‑1 (MQ=255) aGTA‑CAGACCGGCCTTCAGGAAAGAGATTTGTCCGTTGAATTCCAGCCCATGAATATTAAAGAATGACCATGGCAATTGGATGTCATTCATGTGATGTGCATAAAACATGCCTTGATAGGCCAGGTTGTGCACAGTAAACAcc > 2:479051/1‑143 (MQ=255) cAGACCGGCCTTCAGGAAAGAGATTTGTCCGTTGAATTCCAGCCCATGAATATTAAAGAATGACCATGGCAATTGGATGTCATTCATGTGATGTGCATAAAACATGCCTTGATAGGCCAGGTTGTGCACAGTACACACCGACt > 2:103448/1‑143 (MQ=255) cGGCCTTCCGGAAAGTGAGTTGTCCGTTGCTTTCCAGCTTTTCGATATTAGAGAATGACCAGTGCATTTGGTTGTCATTCATGTGATGTGCATAGAACATGCCTTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGcc < 1:508240/143‑1 (MQ=255) cGGCCTTCAGGAAAGAGATTTGTCCGTTGAATTCCAGCCCATGAATATTAAAGAATGACCATGGCAATTGGATGTCATTCATGTGATGTGCATAAAACATGCCTTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGcc > 1:144667/1‑143 (MQ=255) ctccAGGAAAGAGCCTCGTCCGTTGAATTCCAGCCCAGGAATATTAAAGAATGACCATGGCAATTGGATGTCATTCATGTGATGTGCATAAAACATGCCGTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGAc < 2:131452/140‑1 (MQ=255) ggAAGGAGATGTGTCCGTTCAATTCCAGCCCATGCATATGAAATAATGACCACGGCAATTGGACGTCATTCATCTGATGCGCATAACGCATGCCTTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGACGCCcg < 2:154531/143‑1 (MQ=255) ggAAAGAGATTTGTCCGTTGAATTCCAGCCCATGAATATTAAAGAATGACCATGGCAATTGGATGTCATTCATGTGATGTGCATAAAACATGCCTTGGTAGGCCAGGTTGTGAACAGTACACACCGACTTCGCCGGACGccag > 1:203747/1‑141 (MQ=255) ggAAAGAGATTTGTCCGTTGAATTCCAGCCCATGAATAATAAAGAATGACCATGGCAATTGGATGACATTCATGTGATGTGCATAAAACATGCCTTGATAGGCCAGGTTGTACACAGTAAACACCGACCTCGCCCGACGcccc > 1:203828/1‑142 (MQ=255) gAAAGAGATTTGTCCGTTGAATTCCAGCCCATGAATATTAAAGAATGACCATGGCAATTGGATGTCATTCATGTGATGTGCATAAAACATGCCTTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGACGCCcgc > 1:153860/1‑143 (MQ=255) aaaGAGATTTGTCCGTTGAATTCCAGCCCATGAATATTAAAGAATGACCATGGCAATTGGATGTCATTCATGTGATGTGCATAAAACATGCCTTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGACGCCcgcg > 2:410001/1‑143 (MQ=255) tGTCCGTTGAATTCCAGCCCATGAATATTAAAGAATGACCATGGCAATTGGATGTCATTCATGTGATGTGCATAAAACATGCCTTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGACGCCCGCGCGCCGCCAg < 2:392774/143‑1 (MQ=255) gTCCGTTGAATTCCAGCCCATGAATATTAAAGAAGGACCATGGCAATTGGATGTCATTCATGTGATGTGCATAAAACATGCCTTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGACGCCCGCGCGCCGCCAGa < 1:623680/143‑1 (MQ=255) gTTGAATTCCAGCCCATGAATATTAAAGAATGACCATGGCACTTGAATGTCAATCATGTGATATGCATAAAAAATGCCTAGATAGGCCAGGTAGTGCACAGTAAAAACCAACGACGCAGGACGCGCGCGCGCCGCCaacaacg > 1:106691/1‑137 (MQ=255) gcttCCAGCCCTTTAATATTGAACTATGACGCTGGCAATTGGGTGTCATTCATGTGCTGTGCCTAACACACGCCTTGATAGGCCAGGTTGCGCCCAGTAAACACCGACTTCGCCGGACGCCCGCGCGCCGCCAGCTACGCAgg < 1:459312/141‑1 (MQ=255) ccATGAATATTAAAGAATGACCATGGCAATTGGATGTCATTCATGTGATGTGCATAAAACATGCCTTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGACGCCCGCGCGCCGCCAGATACGCAGGCGCAAGGcc > 1:175911/1‑143 (MQ=255) cATGAATATTAAAGAATGACCATGGCAATTGGATGTCATTCATGTGATGTGCATAAAACATGCCTTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGACGCCCGCGCGCCGCCAGATACGCAGGCGCAAGCCCt > 2:625495/1‑143 (MQ=255) atatTAAAGAATGACCATGGCAATTGGATGTCATTCATGTGATGTGCATAAAACATGCCTTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGACGCCCGCGCGCCGCCAGATACGCAGGCGCAAGGCCTGCATg < 2:157757/143‑1 (MQ=255) aagaaagaCCATGGCCATGGGATGGCATTCATGTGATGTGCAGAAAACATGCCGTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGACGCCCGCGCGCCGCCAGATACGCAGGCGCAAGGCCTGCATGCCAGTc < 2:452892/143‑1 (MQ=255) aaGAATGACCATGGCAATTGGATGTCATTCATGTGATGTGCATAAAACATGCCTTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGACGCCCGCGCGCCGCCAGATACGGAGGCGCAAGGCCTGCATGCCAGTc > 2:320837/1‑143 (MQ=255) tgagtagtgtcgCAATGGGATGTCAGGCATGTGATGTGGATAGATGATGCCTTGAGAGGCCAGGTTGTGCATAGTAAACACCGACGTCGGCGGACGCCCGCGCGCCGCCGGATTCGCAGGCGCAAGGCCTGCATGCCAGTCGt < 1:76364/132‑1 (MQ=255) tGACCATGGCAATTGGATGTCATTCATGTGATGTGCATAAAACATGCCTTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGACGCCCGCGCGCCGCCAGATACGCAGGCGCAAGGCCTGCATGCCAGTCGTgcg < 2:407034/143‑1 (MQ=255) ggCAATTGGATGTCATGCATGTGATGTGCATAAAACATGCCGTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGACGCCCGCGCGCCGCCAGATACGCAGGCGCAAGGCCTGCATGCCAGTCGTGCGCATGcac < 2:76917/143‑1 (MQ=255) ggCAATTCGATGTCATGCATGTGATGTGCATAAAGCATGCCTTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGACGCCCGCGCGCCGCCAGATACGCAGGCGCAAGGCCTGCATGCCAGTCGTGCGCATGcac < 1:257252/143‑1 (MQ=255) aaTTGGATGTCATTCATGTGATGTGCATAAAACATGCCTTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGACGCCCGCGCGCCGCCAGATACGCAGGCGCAAGGGCTGCATGCCAGTCGTGCGCATGgaccac > 1:45007/1‑143 (MQ=255) aaTTGGATGTCATTCATGTGATGTGCATAAAACATGCCTTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGACGCCCGCGCGCCGCCAGATACGCAGGCGCAAGGCCTGCATGCCAGTCGTGCGCATGcaccac > 2:164855/1‑143 (MQ=255) ggATGTCATTCATGTGATGTGCATAAAACATGCCTTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGACGCCCGCGCGCCGCCAGATACGCAGGCGCAAGGCCTGCATGCCAGTCGTGCGCATGCACCACATCa < 2:324763/143‑1 (MQ=255) tGTCATTCATGTGATGTGCATAAAACATGCCTTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGACGCCCGCGCGCCGCCAGATACGCAGGCGCAAGGCCTGCATGCCAGTCGTGCGCATGCACCACATCAGGa > 2:534930/1‑143 (MQ=255) catGTGATGTGCATAAAACATGCCTTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGACGCCCGCGCGCCGCCAGATACGCAGGCGCAAGGCCTGCATGCCAGTCGTGCGCATGCACCACATCAGGACGCCAGa < 2:151275/143‑1 (MQ=255) tgtgatgtgCATAAAACATGCCTTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGACGCCCGCGCGCCGCCAGATACGCAGGCGCAAGGCCTGCATGCCAGTCGTGCGCATGCCCCAGATCCGGACCCCAGact > 1:168088/1‑141 (MQ=255) tctgatgtgCATAAAACGCGCCTTGATAGGCCAGGTCGTGCACAGTAAACAGCGACTTCGCCGGACGCCGGCGCGCCGCCAGATACGCAGGCGCAAGGCCTGCATGCCAGTCGTGCGCATGCACCACATCAGGACGCCAGAAt < 1:459252/141‑1 (MQ=255) gatgggCATAAAACATGCCTTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGACGCCCGCGCGCCGCCAGATACGCAGGCGCAAGCCCTGCATGCCACTCGTGCGCATGCACCCCACCAGGACGCCAGAATggg > 1:515251/1‑143 (MQ=255) | GATCTCGCGAGCGTAGGTTGGACTGACCGCCGTAATGTGATCGGCATAGTA‑CAGACCGGCCTTCAGGAAAGAGATTTGTCCGTTGAATTCCAGCCCATGAATATTAAAGAATGACCATGGCAATTGGATGTCATTCATGTGATGTGCATAAAACATGCCTTGATAGGCCAGGTTGTGCACAGTAAACACCGACTTCGCCGGACGCCCGCGCGCCGCCAGATACGCAGGCGCAAGGCCTGCATGCCAGTCGTGCGCATGCACCACATCAGGACGCCAGAATGGG > NC_000913/3567376‑3567658 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |