Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 1,978,503 Δ776 bp insB1insA insB1, insA

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1978503 1979278 776 40 [0] [1] 41 insB1–insA insB1, insA

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 19785020 (0.000)35 (0.960) 29/268 0.2 100% intergenic (‑305/+16) flhD/insB1 flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
?NC_000913 1979279 = 0 (0.000)intergenic (‑64/‑474) insA/uspC IS1 repressor TnpA/universal stress protein

TGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGC  >  NC_000913/1979146‑1979418
                                                                                                                                     |                                                                                                                                           
catcccatttcgatttttcctaaatcgacgcaactgtactcgtccctacactcacatacaacggaggggggctgcgattttcaataatcggtgatgcagaccacacaaaacactcaattacttaacctaaataTATAAGTCAt                                                                                                                                    >  1:108691‑M2/134‑143 (MQ=255)
     gtgagttatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaagactcaattacttaacataaatgTTTCAGTCATACttt                                                                                                                               >  1:356500‑M2/129‑143 (MQ=255)
             tttttcctaaatcgacgcatgtgtacccgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacataaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTgg                                                                                                                       <  1:255830‑M2/23‑1 (MQ=255)
              ttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTggg                                                                                                                      <  2:448809‑M2/24‑1 (MQ=255)
                ttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGgtg                                                                                                                    >  2:474204‑M2/118‑143 (MQ=255)
                   ctaaatcgacgcaactgtactcgtcactacacgcacataccactgaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAt                                                                                                                 <  2:248188‑M2/29‑1 (MQ=255)
                       atcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCa                                                                                                             <  1:65015‑M2/33‑1 (MQ=255)
                        gcgacgcagctgtactcgtctctacactcacatacaacgggggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacacttaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCaa                                                                                                            <  1:105886‑M2/34‑1 (MQ=255)
                           acgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCt                                                                                                         >  1:573723‑M2/107‑143 (MQ=255)
                              gagctctactcctcactccactcacctacaacggtggggggctgcgattttcactaatgcgtgatgcagatcccacaaaaccctcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGtt                                                                                                      <  1:7924‑M2/40‑1 (MQ=255)
                                       tcgtctctaaatgcacatacaacgtaggagtgctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGttt                                                                                             <  1:422674‑M2/49‑1 (MQ=255)
                                        cgtcactacacgcacatacaacggaggggggatgacatttcgaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGtttt                                                                                            <  1:473701‑M2/50‑1 (MQ=255)
                                             ctacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgct                                                                                       >  1:527336‑M2/89‑143 (MQ=255)
                                                   gcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTCGGGTGTCTTATAGTCTGTTAAAAAGTTTTTcgctacgcta                                                                                 >  2:634443‑M2/83‑143 (MQ=255)
                                                   gcacagacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacgcta                                                                                 <  1:254364‑M2/61‑1 (MQ=255)
                                                             cggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCaaaa                                                                       >  2:247341‑M2/73‑143 (MQ=255)
                                                                aggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATg                                                                    >  2:90339‑M2/70‑143 (MQ=255)
                                                                aggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAGTTTAGTCTGCTATAGAGCGTGTCGCTACGCGAGCAGGAAACAATg                                                                    >  2:279155‑M2/70‑143 (MQ=255)
                                                                      gctgctatttttaataatgcattatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATATGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAg                                                              <  1:208809‑M2/80‑1 (MQ=255)
                                                                        tgcgattttctataatgcgtgatgcagatcacacaaaacactcaattacttaacataactcTATAAGTCATACTTTTGTTCTGGGTGTCTTTCAATCTGTTAAAAAGTTTTTCTCTACTTTAGCAAGCAAAAACTAAAcagta                                                            >  1:255240‑M2/62‑141 (MQ=255)
                                                                          cgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGaat                                                          >  1:262998‑M2/60‑143 (MQ=255)
                                                                          cgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGaat                                                          >  1:246710‑M2/60‑143 (MQ=255)
                                                                               ttaaatactccgtgatgcagatcacacaaaacacccaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCg                                                     <  2:71994‑M2/89‑1 (MQ=255)
                                                                                     aatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATgg                                               <  2:573723‑M2/95‑1 (MQ=255)
                                                                                         cgttatgcacatcacacaaaccacgcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGGATTTCAATCTGTTAAAAAGTGTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATg                                           <  2:108691‑M2/99‑1 (MQ=255)
                                                                                             tttgagattacataaaacactcaattacttaatattaaagTATAAGACATACGTTGGGTTTGGGGGGATTTCAATCTGTTAAAAAGTTTTTCGCTACGCGAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTgc                                       <  2:391734‑M2/103‑1 (MQ=255)
                                                                                                 agatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTTGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCACAAATGAAACAGTAATAACCGAACTGGGATAttgcgccc                                   >  1:224536‑M2/37‑141 (MQ=255)
                                                                                                      acacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCa                              >  1:176914‑M2/32‑143 (MQ=255)
                                                                                                            accactcagttacttaacctcaacgGATAAGTCATACTTTTGTTTTGGGTGGATATCAATCCGTGAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAAGCGAAATGGGATGTTGCGCACAGTCAAAATaa                        <  2:382777‑M2/118‑1 (MQ=255)
                                                                                                            aacactcaattactgaacataaatgTATAAGTCATACATTTGTGTTGGGTGTATTTCACTCTGTTAAAAAGTTCTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATaa                        <  2:458248‑M2/118‑1 (MQ=255)
                                                                                                                 tccgttacgtaacatcaaggTATAAGTCATACTATTGTTTTGGGTGTATTTCAATCTGTCAAAAAGGTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCAc                   <  2:644638‑M2/123‑1 (MQ=255)
                                                                                                                 tcaaagacttaacataaaagTATAAGTCATACTTTAGTTTTGGGTGAAATTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCAc                   <  2:356500‑M2/123‑1 (MQ=255)
                                                                                                                      ttgtgcacATTAATGTATGAGTTATGTTTTTTTTTTGGGGGTATTTCAATCTGTGAAAAAGGTTTTCGCTATGCCAGCAATCAAAAATGAAACAGGAATACTCGAAATGGGATGTTGCGCACAGTCAAAATACCTCACCGTaa              <  1:279155/136‑1 (MQ=255)
                                                                                                                      tacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTaa              <  1:90339‑M2/128‑1 (MQ=255)
                                                                                                                       acttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTaaa             >  2:94897‑M2/15‑143 (MQ=255)
                                                                                                                         ttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGCTGTTGCGAACAGTCAAAATAACTCACCGTAaata           >  2:169406‑M2/13‑143 (MQ=255)
                                                                                                                              ataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAGATAatcat      >  2:452648‑M2/8‑143 (MQ=255)
                                                                                                                              ataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACAgtaaataattaa      >  1:72529‑M2/8‑140 (MQ=255)
                                                                                                                                  atgTATAAGTCATACTTTTGTTTTGGGTGTATTTCGATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGt                                          <  2:513938‑M2/100‑1 (MQ=255)
                                                                                                                                  atgTATAAGTCATACTTTTGTTTTGGGTGTATTTCGATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGt                                          >  1:513938‑M2/4‑103 (MQ=255)
                                                                                                                                  atgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTACATAATCATCTGc  >  1:199953‑M2/4‑143 (MQ=255)
                                                                                                                                     |                                                                                                                                           
TGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGC  >  NC_000913/1979146‑1979418

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.