| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1979489 | 1 (0.030) | 67 (1.730) | 32/284 | 0.2 | 98.5% | intergenic (‑274/‑264) | insA/uspC | IS1 repressor TnpA/universal stress protein |
| ? | NC_000913 | = 2290111 | NA (NA) | intergenic (‑32/+1) | insH1/yejO | IS5 transposase and trans‑activator/pseudogene, autotransporter outer membrane homology,putative transport, Not classified, putative ATP‑binding component of a transport system | |||||
CTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCC > NC_000913/2289978‑2290244 | ctctTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACACTGTTCTAT‑GGCTACAGATGACAAACATGATATCATACCAGGGACTTGATCGCACCTTCCACAACgata > 1:486753/1‑140 (MQ=11) ctTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTa < 2:227557/143‑1 (MQ=38) ttttCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAg > 2:447780/1‑143 (MQ=38) cTGGTTTGACGGCGCTTTCTGCTGAATTCCCTGTCGGCGAAGGTAAGTTGATGACTCATGATTAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGccac < 1:374601/143‑1 (MQ=255) tGGTCTGACGGCGCTTCCTGCTGACTTCACTGTCGGCGCAGGTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑TGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGccacc < 1:29483/143‑1 (MQ=255) gTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGGCAAACATGATCTCATATCAGGGACTTGTTCGCACCACCCAAAACGCTGTAGCCACCAg > 2:599156/1‑143 (MQ=255) gcTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCCGGGACTTCTCCGCACCTCCCAAAACGCTGTAGCCACCAGAACCGATAtt > 1:312157/1‑143 (MQ=17) gAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTG‑TCTATCCGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGAc < 2:489825/143‑1 (MQ=255) tCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCCCCAGAACAGATATTGCGGAACGACAAag > 1:374228/1‑143 (MQ=255) tGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGaa > 2:333840/1‑143 (MQ=255) gTCGGCGAAGGTAAGTTGATGCCTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCCTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGaaa < 2:199204/143‑1 (MQ=255) tCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCGCCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGaaaa > 2:601316/1‑142 (MQ=255) ggCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGTACGACACAGAGAAACAg > 2:552766/1‑143 (MQ=255) gCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGa < 2:359163/143‑1 (MQ=255) gCGAAGGTAAGTTGATGACTCATGATGAACCCTGCTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGCGCGACAAAGCGAAACAGa > 2:143335/1‑143 (MQ=255) cGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGaa < 1:56172/143‑1 (MQ=255) gAAGGTAAGTTGATGACTCATGAAGAACCCTGTTCTAT‑GGCTACAGATGACAAACATGATCACATATCAGGGACTTGTTCACACCTTACATAACGCTGTAGCCACCAGAACAGAAATTGCGAAAAAACAAAGAGAAACAAAAc > 1:211847/1‑143 (MQ=18) aGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAAGGACAAAGCGAAACAGAACCAGATTg > 2:211743/1‑143 (MQ=255) aGTGGATGACGCATGATGAACCCTGGTCTAT‑GGCTCCAGATGACAAACAGGATCTCATAGCAGGGACTTGTCCGCATCTTCCATAACGCGGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTg < 1:442597/143‑1 (MQ=25) ttGATGACTCATGAGGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGAt < 2:221179/143‑1 (MQ=255) gatgaCTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGACTGATGc > 1:117747/1‑143 (MQ=255) atgaCTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCCCCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCa > 2:25300/1‑143 (MQ=255) tCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAg > 1:4187/1‑143 (MQ=255) gaCCCTGTTCTAT‑CGCTCCATATTACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATc < 1:46851/142‑1 (MQ=255) cccTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCt > 2:360538/1‑143 (MQ=255) ccTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGGAACAGAACCAGATTGATGCATTGAGCTTTCATCCTa < 2:434805/143‑1 (MQ=255) ccTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTa > 1:283320/1‑143 (MQ=255) cttttCTAT‑TGTTTCAGATGACTTATTTGATCTCATTTCAGGGACTTGTTCGTACCTTCTATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGCGCTTTTCTCCttt < 1:332230/140‑3 (MQ=255) tGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGACCGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATg > 2:511363/1‑143 (MQ=255) ggCTCCAGATGACAAACATGATCTCATATCAGTGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAaattaat < 1:380968/143‑1 (MQ=255) ccAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCt < 1:18612/143‑1 (MQ=255) gATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGtt > 2:502926/1‑143 (MQ=255) cATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCAtt > 2:345608/1‑143 (MQ=255) tGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTgg < 2:582390/143‑1 (MQ=255) gATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTggg < 2:500143/143‑1 (MQ=255) caTCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTggg < 2:292553/142‑1 (MQ=255) tctcATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGGAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTa > 1:372417/1‑143 (MQ=255) atatCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGa > 2:67477/1‑143 (MQ=255) tatCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGaa > 1:594394/1‑143 (MQ=255) atCAGGGACTTCTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGaaa < 1:393136/143‑1 (MQ=255) tCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCGCCAGAACAGATATTGCGGAACGACAAAGAGGAGCAGACCCAGATTGATGCATTGAGCTTTCATCCTATGAAATTGATTGCTGTTAAGAGGCTTGATTACAGaaag > 2:209387/1‑142 (MQ=255) acagACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATa < 1:50979/140‑1 (MQ=255) aGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATa < 1:595057/143‑1 (MQ=255) cgatttGTGCGCACCTGCAAGAAGCCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATAcc < 2:360182/139‑1 (MQ=255) cGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTcc > 1:471799/1‑143 (MQ=255) | CTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCC > NC_000913/2289978‑2290244 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |