| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2290111 | NA (NA) | 30 (0.780) | 28/284 | 0.3 | 90.9% | intergenic (‑32/+1) | insH1/yejO | IS5 transposase and trans‑activator/pseudogene, autotransporter outer membrane homology,putative transport, Not classified, putative ATP‑binding component of a transport system |
| ? | NC_000913 | = 2876679 | 3 (0.080) | coding (101/1038 nt) | iap | aminopeptidase in alkaline phosphatase isozyme conversion | |||||
AAAAAATTTGCATGGTATTTAAGGACTCACTATGTTTTCCGCATTGCGCCACCGTACCGCTGCCCTGGCGCTCGGCGTATGCTTTATTCTCCCCGTACACGCCTCGTCACCTAAACCTGGCGATTTTGCTAATACTCAGGCACGACATATTGCTACTTTCTTTCCGGGACGCATGACCGGAACTCCTGCAGAAATGTTATCTGCCGATTATATTCGCCAACAGTTTCAGCAAATGGGTTATCGCAGTGATATTCGGACATTTAATAGTCGGTA > NC_000913/2876548‑2876820 | aaaaaaTCTGCATGGTATTTAAGGACTCACTATGTTTTCCGCATTGCGCCACCGTACCGCTGCCCTGGCGCTCGGCGTATGCTTTATTCTCCCCGTACACGCCTCGTCACCTAAACCTGGCGATTTTGCTAAggaaggtgcga > 2:181939‑M2/1‑132 (MQ=255) aaaaaTTTGCATGGTATGTACGGGCTCACTATGTTCTCCGCAGTGTGCCGCCGTGCCCCTGCCCTGGCTCGCGGCGTATGCTTTATTCTCCCCGTACACGCCTCGTCACCTAAACCTGGCGATTTTGCTAAggaaggtgcgaa > 1:399917‑M2/1‑131 (MQ=255) agtcgcgaagaaacgatctaaaaggggttattccaggcatttactggagaaaaaatgggctcaaacatgaacaaatgaaatgactgagtcacccgagaagaatttccccgcttattcgcaccttccCTAATCCTCAGGCACGa < 1:139947‑M2/17‑1 (MQ=255) aaTTTGCATGGTATTTAAGTTCTCTCTATGTTTTCCGCATTGCGCCACCGTACCGCTGCCCTGGCGCTCGGTGTATGCTTTATTCTCCCCGTACACGCCTCGTCACCTATACCTGGCGATTTTGCTAAggaaggtgcgaacaa > 1:330346‑M2/1‑128 (MQ=255) ggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttcaccgcttattcgcaccttccCTAATACTCAGGCACgacgt > 1:570463‑M2/124‑141 (MQ=255) tttGCATGGTATTTCAGGGCTCACTATGTTTTCCGCATTGCGCCACCGTACCGCTGCCCTGGCGCTCGGCGTATGCTTTATTCTCCCCGTACACGCCTCATCACCTAAACCTGGCGATTTTGCTAAggaaggtgcgaacaagt > 2:639681‑M2/1‑126 (MQ=255) gcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatatccccgattatacccaccttccCTAATACTCAGGCACGCCata > 1:137271‑M2/123‑143 (MQ=255) cgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTCATACTCAGGCACGACatat > 2:569789‑M2/122‑143 (MQ=255) aagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATACTCAGGCACGACATATTg > 2:324771‑M2/120‑143 (MQ=255) aagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATACTCAGGCACGACATATTg < 2:407102‑M2/24‑1 (MQ=255) tGGTATTTAAGGACTCACTATGTTTTCCGCATTGCGCCACCGTACCGCTGCCCTGGCGCTCGGCGTATGCTTTATTCTCCCCGTACACGCCTCGTCACCTAAACCTGGCGCTTTTGCTAAggaaggtgcgaacaagtacctga < 2:484841‑M2/143‑24 (MQ=255) tttAAGGACTCACTATGTTTTCCGCATTGCGCCACCGTACCGCTGCCCTGGCGCTCGGCGTATGCTTTATTCTCCCCGTACACGCCTCGTCACCTAAACCTGGCGATTTTGCTAAggaaggtgcgaacaagtccctgatatga > 2:441394‑M2/1‑115 (MQ=255) gtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcgtattcgcaccttccCTAATACTCAGGCACGACATATTGCTActttc > 1:401930‑M2/112‑143 (MQ=255) tAAGGACTCACTATGTTTTCCGCATTGCGCCACCGTACCGCTGCCCTGGCGCTCGGCGTATGCTTTATTCTCCCCGTACACGCCTCGTCACCTAAACCTGGCGATTTTGCTAAggaaggtgcgaacaagtccctgatatgaga > 2:58223‑M2/1‑113 (MQ=255) ggACTCACTATGTTTTCCGCATTGCGCCACCGTACCGCTGCCCTGGCGCTCGGCGTATGCTTTATTCTCCCCGTACACGCCTCGTCACCTACACCTGACCATTTTGCAAAagaaagtgcgaacaagaccatgatatgagatag < 2:502457‑M2/143‑34 (MQ=255) tCACCATGTCTGCCGCATTGCGCCACCGGACCGCTGCCCTGGCGCTCGGCGTATGCTTTATTCTCCCCGTACACGCCTCGTCACCTAAACCTGGCGATTTTGCTAAggaaggtgcgaacaagtccctgatatgagatcatgtt > 2:273410‑M2/1‑106 (MQ=255) gctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttagtcgcaccttccCTCATACTCAGGCACACCATATTGCGAATTTCTGtgcggagc > 1:407331‑M2/102‑140 (MQ=255) tgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATACTCAGGCACGACCTATTGCTACTTTCTTTCCGGgaccc > 2:194974‑M2/100‑141 (MQ=255) ggcatttacggcagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATACTCAGGCACGACATATTGCTACTTTCTTTCCGGGACGCATGACCgg < 2:80426‑M2/52‑1 (MQ=255) catttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATACTCAGGCACGACATATTGCTACTTTCTTTCCGGGACGCATGACCGGaa < 1:420775‑M2/54‑1 (MQ=255) atttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATACTCAGGCACGACATATTGCTACTTTCTTTCCGGGACGCATGACCggacc > 1:443062‑M2/89‑141 (MQ=255) ttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATACTCAGGCACGACATATTGCTACTTTCTTTCCGGGACGCATGACCGGAACTc < 2:373610‑M2/57‑1 (MQ=255) aTTGCGCCACCGTACCGCTGCCCCGGCGCTCGGCGTATGCTTTATTCTCCCCGTAGGCGCCTCGTCACCTACACCTGGCGATTTTGCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccat > 1:308053‑M2/1‑90 (MQ=255) ttGCGCCACCGTACCGCTGCCCTGGCGCTCGGCGTATGCTTTATTCTCCCCGTACACGCCTCGTCACCTAAACCCGGCGATTTTGCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccata > 2:608663‑M2/1‑89 (MQ=255) gggggaaaaaatcggctgaaacatgaagaaatgaaatgactgagtcagccgagaagaattgccccgcttatgcgcacctgccCTAAGAGTCAGGCACGACATATTGCTACTTTCTTGCCGGGACGCATGATCGGAACTCCTGc < 1:125069‑M2/61‑1 (MQ=255) gggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATACTCAGGCACGACATATTGCTACTTTCTTTCCGGGACGCATCACCGGAactccgtc > 1:613236‑M2/83‑140 (MQ=255) gagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATACTCAGGCACGACATATTGCTACGTTCTTTCCGGGACGCATGACCGGAACTCCTGCAg > 2:225258‑M2/81‑143 (MQ=255) cACCGTACCGCTGCCCTGGCGCTCGGCGTATGCTTTATTCTCCCCGTACACGCCTCGTCACCTAAACCTGGCGATTTTGCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacag < 1:22597‑M2/143‑61 (MQ=255) gaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATACTCAGGCACGACATATTGCTACTTTCTTTCCGGGACGCATGACCGGCACTCCCGCAGaa > 1:173196‑M2/79‑143 (MQ=255) gaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATACTCAGGCACGACATATTGCTACTTTCTTTCCGGGACGCATGACCGGAACTCCTGCAGaa < 2:405493‑M2/65‑1 (MQ=255) aagaatcggctcaaacatgaagaaatgaaatgactgcgtcagccgagaagaatttccccgcttattcgcaccttccCTAATACTCAGGCACGACATATTGCTACTTTCTTTCCGGGACGCATGACCGGAACTCCTGCAGAAAt < 1:455013‑M2/67‑1 (MQ=255) ccGCTGCCCTGGCGCTCGGCGTATGCTTTATTCTCCCCGTACACGCCTCGTCACCTAAACCTGGCGATTTTGCTCAggaaggttcgaacatgtccctgatatgaggtcatgtttgtcatctggagccatagaaccggatttat < 2:92073‑M2/143‑68 (MQ=255) ccGCTGCCCTGGCGCTCGGCGTATGCTTTATTCTCCCCGTACACGCCTCGTCACCTAAACCTGGCGATTTTGCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcat > 1:590270‑M2/1‑76 (MQ=255) ccGCTGCCCTGGCGCTCGGCGTATGCTTTATTCTCCCCGTACACGCCGCGTCACCTGAACCTGGCGATTTTGCTAAggaaggtgcgaaaaagtgccggatatgagatcatgtgtggcatggggagcactagaacagggttcca < 1:184615‑M2/143‑68 (MQ=255) ggctcaagcatgcagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATACTCAGGCACGACATATTGCTACTTTCTTTCCGGGACGCATGACCGGAACTCCTGCAGAAATGTTATCt < 1:494150‑M2/74‑1 (MQ=255) gCCCTGGCGCTCGGCGTATGCTATATTCTCCCCGTACACGCCTCGTCACCTAAACCTGGCGAGTTTGCTAAggaaggtgcgaacaagtcccttatatgagatcatgtttgtcatctggagccatagaacagggttcatcatga > 2:7941‑M2/1‑71 (MQ=255) tGGCGCTCGGCGTATGCTTTATTCTCCCCGTCCACGCCTCGTCACCTAAACCTGGCGATTTTGCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtca > 1:113375‑M2/1‑67 (MQ=255) tGGCGCTCGGCGTATGCTTTATTCTCCCCGTACACGCCTCGTCACCTAAACCTGGCGATTTTGCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtca > 2:479013‑M2/1‑67 (MQ=255) agaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATACTCAGGCACGACATATTGCTACTTTCTTTCCGGGACGCATGACCGGAACTCCTGCAGAAATGTTATCTGCCGATTATATTc > 2:522980‑M2/57‑143 (MQ=255) gCTTTATTCTCCCCGTACACGCCTCGTCACCTAAACCTGGCGATTTTGCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggtgcatcatgagtcatcaacttaccttcgc < 2:546311‑M2/143‑92 (MQ=255) tcCCCGTACACGCCTCGTCACCTAAACCTGGCGATTTTGCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtga < 1:121993‑M2/143‑101 (MQ=255) tcagccgagaagaatttccccgcttattcgcaccttccCTAATACTCAGGCACGACATATTGCTACTTTCTTTCCGGGACGCATGACCGGAACTCCTGCAGAAATGTTATCTGCCGATTATACTCGCCAACAGTTTCAgcaca > 1:90954‑M2/39‑141 (MQ=255) ccccGTACATGCCTCGTCTCCTGAACTTGTCGATTTTGCTAAggaaggtgcgaacaagtacctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaa > 2:418517‑M2/1‑42 (MQ=255) cagccgagaagaatttccccgcttattcgcaccttccCTAATACTCAGGCACGACATATTGCTACTTTCTTTCCGGGACGCATGACCGGAACTCCTGCAGAACTGTTCTCTGCCCACGATAGCCGCCCACAGCTTCAGCAAAt > 1:91081‑M2/38‑143 (MQ=255) gccgagaagaatgtccccgcttattcgcaccttccCTAATACTCAGGCACGACATATTGCTACTTTCTTTCCGGGACGCATGACCGGAACTCCTGCAGAAATGTTATCTGCCGATTATATTCGCCAACAGTTTCAGCAAATgg < 2:570463‑M2/108‑1 (MQ=255) ccgagaagaatttccccgcttattcgcaccttccCTAATACTCAGGCACGACATATTGCTACTTTCTTTCCGGGACGCATGACCGGAACTCCTGCAGAAATGTTATCTGCCGATTATATTCGCCAACAGTTTCAGCAAATggg < 2:586947‑M2/109‑1 (MQ=255) tACACGCCTCGTCACCTACACCTGGCGATTTTGCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcag > 2:42198‑M2/1‑37 (MQ=255) cccgcCTCGTCACCTATACCTGTCGATTTTGCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagca > 1:413452‑M2/3‑35 (MQ=255) ccTCGTCACCTAAACCTCGCGATTTTGCTAAggagggtgcgaacaagtccctgataggagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaa > 1:57029‑M2/1‑31 (MQ=255) tCACCTAAACCTGGCGATTTGGCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgcc > 2:666519‑M2/1‑26 (MQ=255) aCCTGAACCTGGCGATTTTGCTAAggaaggtgcgaagaagtctctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgt > 1:55635‑M2/1‑24 (MQ=255) cgcttattcgcaccttccCTAATACTCAGGCACGACATATTGCTACTTTCTTTCCGGGACGCATGACCGGAACTCCTGCAGAAATGTTATCTGCCGATTATATTCGCCAACAGTTTCAGCAAATGGGTTATCGCAGTGATAtt < 1:324771‑M2/125‑1 (MQ=255) gcttattcgcaccttccCTAATACTCAGGCACGACATATTGCTACTTTCTTTCCGGGACGCATGACCGGAACTCCTGCAGAAATGTTATCTGCCGATTATATTCGCCAACAGTTTCAGCAAATGGGTTATCGCAGTGATATTc < 2:443062‑M2/126‑1 (MQ=255) atgcctggCGAGTTGGCTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatacaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcaga > 1:440768‑M2/4‑20 (MQ=255) ttcgcaccttccCTAATACTCAGGCACGACATATTGCTACTTTCTTTCCGGGACGCATAACCGGAACTCCTGCAGAAATGTTATCTGCCGATTATATTCGCCAACAGTTTCAGCAAATGGGTTATCGCAGTGatattccgcca > 2:252459‑M2/13‑138 (MQ=255) tGGCGATTTTGCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagacatagaacagggttcatagagagctcgcaatggacgttcgccgacagtgaattcagcagtaagcgccgtcagaccaga < 2:152578‑M2/143‑129 (MQ=255) ggCGAGTTGGCTAAggaaggtgcgaacaggtccctgatatgagatcatgtttgtcagctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaa > 1:602711‑M2/1‑14 (MQ=255) accttccCTAATACTCAGGCACGACATATTGCTACTTTCTTTCCGGGACGCATGACCGGAACTCCTGCAGAAATGTTATCTGCCGATTATATTCGCCAACAGTTTCAGCAAATGGGTTATCGCAGTGATATTCGGACATTTaa < 2:401930‑M2/136‑1 (MQ=255) accttccCTAATACTCAGGCACGACATATTGCTACTTTCTTTCCGGGACGCATGACCGGAACTCCTGCAGAAATGTTATCTGCCGATTATATTCGCCAACAGTTTCAGCAAATGGGTTATCGCAGTGATATTCGGACATTTaa < 1:146837‑M2/136‑1 (MQ=255) gttgCTGAgggaggtgcgaccacgtccccgcaagtagttcatgtttgtcatctggagccatagagcagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagaga > 1:472552‑M2/2‑8 (MQ=255) ccCTAATACCCAGGCACGACATAGTGCTACTTGCTTACCGGGACGCATGACCGGAACTCCTGCAGAAATGTTATCTGCCGATTAGATTCGCCAACAGTTTCAGCAAATGGGTTATCGCAGTGATATTCGGACATTTAATAGTc < 2:101243‑M2/141‑1 (MQ=255) tAATACTCAGGCACGACATATTGCTACTTTCTTTCCGGGACGCATGACCGGAACTCCTGCAGAAATGTTAt < 1:535859/71‑1 (MQ=255) tAATACTCAGGCACGACATATTGCTACTTTCTTTCCGGGACGCATGACCGGAACTCCTGCAGAAATGTTAt > 2:535859/1‑71 (MQ=255) aaTACTCAGGCACGACATATTGCTACTTTCTTTCCGGGACGCATGACCGGAACTCCTGCAGAAATGTTATCTGCCGATTATATTCGCCAACAGTTTCAGCAAATGGGTTATCGCAGTGATATTCGGACATTTAATAGTCGCta > 2:544277/1‑143 (MQ=255) | AAAAAATTTGCATGGTATTTAAGGACTCACTATGTTTTCCGCATTGCGCCACCGTACCGCTGCCCTGGCGCTCGGCGTATGCTTTATTCTCCCCGTACACGCCTCGTCACCTAAACCTGGCGATTTTGCTAATACTCAGGCACGACATATTGCTACTTTCTTTCCGGGACGCATGACCGGAACTCCTGCAGAAATGTTATCTGCCGATTATATTCGCCAACAGTTTCAGCAAATGGGTTATCGCAGTGATATTCGGACATTTAATAGTCGGTA > NC_000913/2876548‑2876820 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |