New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3946823	6 (0.160)	4 (0.100)	4/280	4.9	15.4%	intergenic (+5/‑48)	rrfC/aspT	5S ribosomal RNA of rrnC operon/tRNA‑Asp
	?	NC_000913	= 4171800	38 (1.000)					intergenic (+45/‑256)	rrfB/murB	5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGC  >  NC_000913/4171659‑4171921                                                                                                                                              |                                                                                                                          gtCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAAACTGGGCCAATCGTTTTa                                                                                                                          >  1:538272/1‑143 (MQ=255) gtCCCACCGGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTa                                                                                                                          <  1:553683/143‑1 (MQ=25)   cccACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCGCAGTCGAAAGACTGGGCCGTTCGGTGTATc                                                                                                                        >  1:461249/1‑143 (MQ=255)     cACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGCGAGCAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCtg                                                                                                                      >  1:211930/1‑143 (MQ=21)             cccATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGttgtttgt                                                                                                              <  2:965/143‑1 (MQ=35)              ccATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGTAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTc                                                                                                             <  2:644177/143‑1 (MQ=25)                             aaGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCt                                                                                              >  1:524182/1‑143 (MQ=35)                               gtgacatgcggcaGCGCGGATGCGAGGGAGGGGAATCCGCATGCGAGGGTAGGGAACGGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAGAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGa                                                                                            <  1:363961/131‑1 (MQ=11)                               gTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGa                                                                                            <  2:660182/143‑1 (MQ=35)                                      gCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCAAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGAc                                                                                     >  1:644418/1‑143 (MQ=25)                                       ccGTAGCGCCGATGGTAGTGTGGGGTCTCCCCAGGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACa                                                                                    <  2:184037/143‑1 (MQ=21)                                                cggtGGTAGTGCTGGGTCTCCCCATGCGAGGGTAGGGAACTGCCAGGCGTCAAATAGATCGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATccgccg                                                                           <  1:304157/140‑1 (MQ=11)                                                cGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAGCGAAAGGCTAAGTCGAAAGGCTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATccgccg                                                                           >  2:638079/1‑143 (MQ=255)                                                  aTGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGCGTAGGACAAATCCGCCggg                                                                         >  1:255708/1‑143 (MQ=25)                                                         tgtgGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAGGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGCGTCGGACACATCCGCCGGGAGCGGAt                                                                  >  2:14999/1‑143 (MQ=255)                                                         tgtcGGGTCTCCCGAGGCGAGAGTAGGGAGCTTCCAGGCATCAGATAAAACGAAAGGCTCAGTCGAAAGACTGGGCTTTGCGTTTTATCTGTTGTTTGTAGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGAt                                                                  <  1:608656/143‑1 (MQ=11)                                                          gctgcgTCTCCCCGTGCGAGAGTAGGGAACTGCCAGGCATCAAATAAGACGAAAGGCGCAGTCGAAAGACGGGGCCTTTCGGTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCACCGGGAGCGGAtt                                                                 <  1:245774/138‑1 (MQ=11)                                                           tgGGGTCTTCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAACGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGGGCGGAatt                                                                >  2:454317/1‑143 (MQ=255)                                                             gcgTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCAGCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGGGTGTGACAAATCCGCCGGGAGCGGATTTGa                                                              <  1:239469/141‑1 (MQ=255)                                                                    cccATGCGAGAGTAGGGAACTGCCAGGCATCCAATCAAACGAAAAGCTCAGTGGAAAGACTGGGCCTTTCGTATTATCTGTTGTTTGCCGGTAAACGCTCTCCTGAGCAGGACAAATCCGCCGGGAGCGGATCTGGACGTTGc                                                       >  1:480416/1‑143 (MQ=11)                                                                     ccATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGACGGGAGCGGCTTTGAAAGTTggg                                                      >  2:19502/1‑141 (MQ=255)                                                                       gatcGAGAGTGGGGAAGTGCCAGGCGTCAAACAAAACGGTAGGCGCTGTCGAAAGGCTGGGCCTTTCGTTTGATCTGTTGTTTGTCGGTGAACGCTCGCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGaa                                                    <  1:236409/140‑1 (MQ=11)                                                                            agagTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAAc                                               >  2:144890/1‑143 (MQ=32)                                                                                tAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGcc                                           >  1:34956/1‑143 (MQ=32)                                                                                tAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGcc                                           >  2:639593/1‑143 (MQ=32)                                                                                   ggAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGCGCGGCTTTGAACGTTGCGCCGCTACGGCCCgg                                        >  2:266806/1‑143 (MQ=11)                                                                                   ggAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCgg                                        >  1:374419/1‑143 (MQ=32)                                                                                      accgcctcggcccAAATACAGTGAGAGGTTCAGTCGAACGACTGGGCCTTTGGTTTTATCTGTTGTTTGTCGGTGAACGCTCGCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAgg                                     <  1:585715/131‑1 (MQ=11)                                                                                      aCTGCCAGGCAGCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCTGGAgg                                     <  2:569301/143‑1 (MQ=17)                                                                                      aCTGCCAGGCAGCAAAGAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAgg                                     <  2:150955/143‑1 (MQ=17)                                                                                        tGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGACTTGCACGTTGCGACGCCAACGCCCTGGGGGt                                   >  2:285842/1‑143 (MQ=11)                                                                                             ggCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTACAACTGGTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCgg                              <  2:58671/143‑1 (MQ=255)                                                                                                aTCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCa                           <  2:494428/143‑1 (MQ=32)                                                                                                 tCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGGGGCGGGCAg                          >  2:266410/1‑143 (MQ=17)                                                                                                        aaaCGAAAGGCTCAGTCGAAAGACTGGGCCGTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGAcgccc                   <  2:189906/143‑1 (MQ=17)                                                                                                                ggCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGCGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCACGCAATaaa           >  1:60958/1‑143 (MQ=12)                                                                                                                ggCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATaaa           >  1:468485/1‑143 (MQ=32)                                                                                                                ggCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATaaa           >  1:465636/1‑143 (MQ=32)                                                                                                                  cTCAGTCGAAAGACTGGGCCTTTCGTTTTATATGTTGTTAGTCGGAGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACt         >  2:284566/1‑143 (MQ=12)                                                                                                                         gAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGc  >  2:606678/1‑143 (MQ=31)                                                                                                                                              |                                                                                                                          GTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGC  >  NC_000913/4171659‑4171921

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.