New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 12078058 (0.110)33 (0.490) 25/250 2.6 85.6% coding (305/630 nt) stfP e14 prophage, uncharacterized protein
?NC_000913 = 1209602 4 (0.060)pseudogene (18/501 nt) stfE pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related

AATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGT  >  NC_000913/1209460‑1209741
                                                                                                                                              |                                                                                                                                           
aaTCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCATCCAGCCTGTTGGCAGGATGGCTGAAGGCCACGGAACCGGAAAAAGAACATGGAATGCagag                                                                                                                                             >  2:384128/1‑143 (MQ=255)
aaTCAGGCAAGTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCAGTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCagag                                                                                                                                             <  2:468929/143‑1 (MQ=255)
 aTCCGGCAATTTATTTGTCGGAGAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGc                                                                                                                                            >  2:1138644‑M2/1‑142 (MQ=255)
  tCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGcc                                                                                                                                           <  1:1209444‑M2/143‑3 (MQ=255)
  tCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGcc                                                                                                                                           >  1:826850‑M2/1‑141 (MQ=255)
  tCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATGGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGcc                                                                                                                                           >  1:75407‑M2/1‑141 (MQ=255)
    aGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGACGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGcctt                                                                                                                                         <  1:45740‑M2/143‑5 (MQ=255)
    aGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGcctt                                                                                                                                         <  1:362677‑M2/143‑5 (MQ=255)
    aGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGcctt                                                                                                                                         <  1:391650‑M2/143‑5 (MQ=255)
    aGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGcctt                                                                                                                                         >  2:569696‑M2/1‑139 (MQ=255)
      gCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttct                                                                                                                                       <  1:655194‑M2/143‑7 (MQ=255)
       cAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctc                                                                                                                                      <  1:85295‑M2/143‑8 (MQ=255)
         atttatttGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGCCACCAACAGGTAATGCAGAGccttctccc                                                                                                                                    <  2:504300‑M2/143‑10 (MQ=255)
          tttatttGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCACCAGCTACGGCAGAGcccgctcgca                                                                                                                                   <  2:668601‑M2/143‑11 (MQ=255)
             atttGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaac                                                                                                                                <  2:1178179‑M2/143‑14 (MQ=255)
                tGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaa                                                                                                                             <  1:468661‑M2/143‑17 (MQ=255)
                 gTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTACTGCAGAGcctccgcccaagccgag                                                                                                                            <  2:71473‑M2/143‑18 (MQ=255)
                  tCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATGTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGCCACCAACAGGGAATGCAGAGccgtctcccaaagcacgg                                                                                                                           <  2:920428‑M2/143‑19 (MQ=255)
                                  cAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgttt                                                                                                           <  2:263673‑M2/143‑35 (MQ=255)
                                         gggTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCCAACCAACGTTTATGTCTGTGATGAAATAACa                                                                                                    >  1:333807/1‑143 (MQ=255)
                                                  tcAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGGACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccga                                                                                           <  1:723076‑M2/143‑51 (MQ=255)
                                                   cagcagAAAAAGCGGCACCATGGCATTGCAGCCGTCCTGGTGGCGGAGTGGCTGAAGGCCACGGAAGCGGGACACCAACAGTTAAGGCAGAGcctgctcccaatccaaggttttcgagagccgtttgcacagtgccatccgat                                                                                          >  1:1224479‑M2/1‑92 (MQ=255)
                                                    agcagAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgcttgcacagtgccatccgatt                                                                                         <  2:452067‑M2/143‑53 (MQ=255)
                                                           aaaGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatgtgatatc                                                                                  <  2:711884‑M2/143‑60 (MQ=255)
                                                            aaGCGGCACCATTGCATTTCCGCGAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcg                                                                                 >  2:626856‑M2/1‑83 (MQ=255)
                                                                    ccATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacgt                                                                         >  1:435778‑M2/1‑75 (MQ=255)
                                                                        tGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgggagccgtttgcacagtgccatccgatttgatatcgccaaacggagtc                                                                     <  1:774653‑M2/143‑73 (MQ=255)
                                                                           aTTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACAGAACCGGGACACCAACAGGAAATGCAGAGCCTTCTCCCAAACCAACGATTCAGAACACAATGAATTAACAAGCAAAGGCCATCAGTCATGCTTATACAAggggt                                                                  >  2:783914/1‑142 (MQ=255)
                                                                            tttCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgc                                                                 >  1:211447‑M2/1‑67 (MQ=255)
                                                                                agccagccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACACGTAATGCAGAGccttcgcccaaaccacggctttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggct                                                             >  1:1076431‑M2/1‑63 (MQ=255)
                                                                                 gccagccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACAACAACAGGTCATGCAGAGccttctcccaaaccaaggttttcgcgagacgtccgcacagtgccatccgatttgatatcgccaaacggattcttgcggctt                                                            <  2:522195‑M2/143‑82 (MQ=255)
                                                                                 gccagccTGTTGGCGGAGTGGCTGAAGGCCACGCGACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgctgctg                                                            <  1:1322522‑M2/143‑82 (MQ=255)
                                                                                        tGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagca                                                     >  1:71473‑M2/1‑55 (MQ=255)
                                                                                        tGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagca                                                     >  1:36375‑M2/1‑55 (MQ=255)
                                                                                           tGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcg                                                  >  1:249598‑M2/1‑52 (MQ=255)
                                                                                                      cTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAAAGCAGAAATAACAAGCAAAGGGCATCATTCCTGCTTTTACGAGGGGGATTTAACATGCTGATTGGCTATGTCcg                                       >  1:451883/1‑143 (MQ=255)
                                                                                                        gAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcaccgtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggt                                     >  1:628489‑M2/1‑39 (MQ=255)
                                                                                                        gAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggt                                     >  1:622755‑M2/1‑39 (MQ=255)
                                                                                                         aaGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtg                                                                                                   >  2:832283‑M2/1‑38 (MQ=255)
                                                                                                         aaGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtg                                                                                                   <  1:832283‑M2/80‑43 (MQ=255)
                                                                                                              cACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaa                               <  1:168777‑M2/143‑111 (MQ=255)
                                                                                                              cACGGAACCGGGACACCAAAAGGTAATGCATAGccttctcccaaaccaaggttttcgagagccgtttgcccagggccatccgatttgatatcgccaaacggattcttcaggcttaacagcagcgcgctgagtgcggtacatac                               <  2:659921‑M2/143‑111 (MQ=255)
                                                                                                                   aaCCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcggagtgcggtaagtaactggt                          <  1:635599‑M2/143‑116 (MQ=255)
                                                                                                                     cgtggtcaGCAACAGGGAAGGCAGAGccttctcccaagccaaggtgttcgagagccgtgtgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcg                        >  2:117968‑M2/4‑26 (MQ=255)
                                                                                                                     ccGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACCAATGa                        >  2:1192712/1‑143 (MQ=255)
                                                                                                                        ggACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtcc                     <  1:356994‑M2/143‑121 (MQ=255)
                                                                                                                        ggACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgagttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtacctggtcgtgc                     <  1:7806‑M2/143‑121 (MQ=255)
                                                                                                                           cacCAACAGGTAATGCAGGGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaccggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgc                  >  2:115177‑M2/1‑20 (MQ=255)
                                                                                                                           cacCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgc                  >  1:139111‑M2/1‑20 (MQ=255)
                                                                                                                                   ggTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgccgtaagtaactggtcgtgccgccccttctc          <  2:489291‑M2/143‑132 (MQ=255)
                                                                                                                                     tAATGCAGAGccttctcccaaaacaaggttttcgagagccgtttgcacagttccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctcca        <  1:69563‑M2/143‑134 (MQ=255)
                                                                                                                                      aaTGCAGGGccttctcccaaaccaaggttttcgagagccgttttcatagtgccattcgatttgatattgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccag       >  1:502152‑M2/1‑9 (MQ=255)
                                                                                                                                       aTGCCGAGccttctcgcgcaccgaggtgttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccagg      >  2:1209444‑M2/1‑8 (MQ=255)
                                                                                                                                           agagccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggctgg  >  1:504300‑M2/1‑4 (MQ=255)
                                                                                                                                           agagcctgctcccaaacctaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggctgg  >  1:1226349‑M2/1‑4 (MQ=255)
                                                                                                                                              |                                                                                                                                           
AATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGT  >  NC_000913/1209460‑1209741

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.