New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 227052	20 (0.360)	11 (0.210)	4/272	7.5	27.8%	noncoding (1294/2904 nt)	rrlH	23S ribosomal RNA of rrnH operon
	?	NC_000913	= 4038791	38 (0.720)					noncoding (1274/2905 nt)	rrlA	23S ribosomal RNA of rrnA operon
Rejected: Coverage evenness skew score above cutoff.

ACGGGGCTAAACCATGCACCGAAGCTGCGGCAGCGACACTATGT‑GTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCC  >  NC_000913/4038651‑4038866                                                                                                                                              |                                                                            aCGGGGCTAAACCATGCACCGAAGCTGCGGCAGCGACACTATGT‑GTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAg                                                                           <  2:259885/143‑1 (MQ=255)  cGGGGATAAACCATGCACCGAAGCTGCGGCAGCGACACTATGT‑GTTGTTGGGTAAGAGAGCGGTTTGGAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACAGAAGTAACGATAAAGc                                                                          >  2:36646/1‑143 (MQ=14)   ggggCTAAACCATGCACCGAAGCTGCGGCAGCGACACTATGT‑GTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCg                                                                         >  2:150335/1‑143 (MQ=255)    ggggTAAACCATGCACCGAGGCTGCGGGAGCGGCACTATGT‑GTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCgg                                                                        <  2:888431/143‑1 (MQ=255)    gggCTAAACGATGCACCGAAGCTGCGGCAGCGACACTATGT‑GTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCgg                                                                        <  1:952801/143‑1 (MQ=255)    gggCTAAACCATGCACCGAAGCTGCGGCAGCGACACTATGT‑GTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCgg                                                                        <  2:371363/143‑1 (MQ=255)      gCTAAACCATGCACCGAAGCTGCGGCAGCGACACTATGT‑GTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGt                                                                      <  2:716605/143‑1 (MQ=255)       cTAAACCATGCACCGAAGCTGCGGCAGCGACACTATGT‑GTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAGGTAACGATAAAGCGGGTg                                                                     >  2:122758/1‑143 (MQ=255)       cTAAACCATGCACCGAAGCTGCGGCAGCGACACTATGT‑GTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTg                                                                     >  2:295163/1‑143 (MQ=255)          aaCCATGCACCGAAGCTGCGGCAGCGACACTATGT‑GTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACTTAAGTAACGATAAAGCGGGTGaaa                                                                  >  1:637643/1‑143 (MQ=255)            ccATGCACCGAAGCTGCGGCAGCGACACTATGT‑GTTGTTGGGTAGGGGAGCGCTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAg                                                                >  2:403546/1‑143 (MQ=255)              aTGCACCGAAGCTGCGGCAGCGACACTATGT‑GTTGTTGGGTAGGGGAGCGTTCTGTAAGCGTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAGGcc                                                              >  2:888681/1‑143 (MQ=255)               ggCACGGAAGCTGCGGCAGCGACACTATGT‑GTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGccc                                                             <  2:250943/142‑1 (MQ=255)                gCACCGAAGCTGCGGCAGCGACACTGTGT‑GTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCg                                                            <  2:531112/143‑1 (MQ=255)                gCACCGAAGCTGCGGCAGCGACACTATGT‑GTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGACTGCTTACATGAGTAACGATAAAGCGGGTGAAAAGCCCg                                                            >  2:274050/1‑143 (MQ=255)                  aCCGAAGCTGCGGCAGCGACACTATGT‑GTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCgggcttttcacccgct                                                          <  2:25918/143‑14 (MQ=255)                   ccGAAGCTGCGGCAGCGACACTATGT‑GTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTc                                                         >  1:232298/1‑143 (MQ=255)                         cttcGGTAGCGACACTATGT‑GTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGa                                                   <  1:753486/140‑1 (MQ=255)                         cTGCGGCAGCGACACTATGT‑GTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGa                                                   <  1:574529/143‑1 (MQ=255)                          tGCGGGAGCGACA‑TTTGTGGTGGTTGGGTGGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGaa                                                  <  1:731603/143‑1 (MQ=11)                          tGCGGCAGCGAGACGCGGT‑GTTGTTGGGTAGGGGAGCGTGCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGaa                                                  <  2:164127/143‑1 (MQ=11)                               cAGCGACACTATGT‑GTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATCATGGCACCGCCATATGTGCGCCTCGATACGTAAGTAACGATAAAGCGGGTGGAGAGCCCGCTCGCCGGAAGACCa                                             >  1:423184/1‑143 (MQ=9)                                aGCGACACTATGT‑GTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCaa                                            <  1:750844/143‑1 (MQ=255)                                  cGACGCTATGG‑GGTGTTTGGTAGGGGAGCGTTCTGGAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAgg                                          <  1:930706/143‑1 (MQ=11)                                  cGACACTATGG‑GTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAgg                                          <  2:328327/143‑1 (MQ=38)                                   gACACTATGT‑GTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGCTAAAGCGGGTGAAAAGCCCGCTCGCCGCCAGACCAAggg                                         >  2:897296/1‑143 (MQ=255)                                    acacTATGT‑GTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGt                                        >  2:925933/1‑143 (MQ=38)                                      acTATGT‑GTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTCTGAACGTGTGCTGTGAGGCATGCTGGAGGCACCAGAAGCGCGAATCCCTACATAAGTAACGATAAAGCGCGCAAGAAGCCCCCCCCCCGCAACACCAAgcgccc                                      >  1:109310/1‑138 (MQ=2)                                        tATGT‑GTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCACGGGTGCCt                                    >  1:206065/1‑143 (MQ=25)                                              gttgttGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGCGGTCTCCGAACTCCGAATGCTGACATAAGTAACGATAAAGCGGGTGACAAGCCCGCTCGCCGGAAGCCCAAGGGATCCTGTCCa                               >  2:342071/1‑143 (MQ=11)                                                tgttgGTGAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACTATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAAc                             <  2:107293/143‑1 (MQ=12)                                                tggtgGGTAGGGGGGCGTTCTGTAGGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAAc                             <  1:605705/140‑1 (MQ=12)                                                 gtgtggTAGGGGAGCGGTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACg                            <  1:31980/139‑1 (MQ=17)                                                  ttgGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAACGGTTCCTGTCCAACGt                           >  1:784254/1‑143 (MQ=17)                                                        aGGGGAGCGTTCTGTAAGCTCGTGAAGGTGTGCTGTGAAGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGACAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCg                     <  2:660471/143‑1 (MQ=255)                                                        aGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCg                     >  2:928085/1‑143 (MQ=32)                                                          gggAGCGTTCTGTGAGCGTGTGATGGTGTGCTGTGAGTCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCggg                   <  1:567319/143‑1 (MQ=255)                                                          gggAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCggg                   <  2:609341/143‑1 (MQ=32)                                                               cggtCTGGAAGCTTGTGACGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAgg              <  1:31806/140‑1 (MQ=255)                                                               cGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAgg              >  1:318567/1‑143 (MQ=32)                                                                gtgcTGTAAGCCTGTGAACGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAggg             <  1:667624/140‑1 (MQ=17)                                                                  taggTAAGGCTGTGAAGGGGTGCGGTGAGGCATGCGGGAGGGAGCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTg           <  2:775359/140‑1 (MQ=11)                                                                         gCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCCACGTGAATCGGGGCAGGGTGAGTCGAc    >  1:915539/1‑143 (MQ=17)                                                                         gCCTGTGAAGGTGAGCTCTTTTGCATTCTGGAGGTAGCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGAc    <  1:150335/143‑1 (MQ=11)                                                                           cTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGAccc  <  2:318567/143‑1 (MQ=32)                                                                                                                                              |                                                                            ACGGGGCTAAACCATGCACCGAAGCTGCGGCAGCGACACTATGT‑GTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCC  >  NC_000913/4038651‑4038866

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.