New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1303239 =0 (0.000)31 (0.780) 26/284 0.5 100% coding (341/921 nt) oppB oligopeptide ABC transporter permease
?NC_000913 = 1979270 NA (NA)intergenic (‑55/‑483) insA/uspC IS1 repressor TnpA/universal stress protein

AAACAACTGGCGCACGGTGATTTCGGTCCATCGTTTAAATATAAAGATTATTCGGTCAATGACTTGGTTGCATCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCGGGGTTGTTATCCCCAGTTTTGTGGTTGCACCATTATTAGTCATGATATTTGCG  >  NC_000913/1303100‑1303363
                                                                                                                                           |                                                                                                                            
ctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGTGc                                                                                                                           <  2:167895‑M1/4‑1 (MQ=255)
     gtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatcgaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGTGCTGGCg                                                                                                                      <  2:484318‑M1/9‑1 (MQ=255)
        cggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGTGCTGGCGTTa                                                                                                                   <  1:601680‑M1/12‑1 (MQ=255)
        cggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagctggcagcatcaccGTGCTGGcgtga                                                                                                                   <  2:525785‑M1/12‑3 (MQ=255)
             tgttgcttgccgttacgcacccccccgtcattagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGTGCTGGCGTTATTGcc                                                                                                              >  2:73272‑M1/127‑143 (MQ=255)
                 ttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGTGCTGGCGTTATTGCCGCAt                                                                                                          <  2:163637‑M1/21‑1 (MQ=255)
                 ttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGTGCTGGCGTTATTGCCGCAt                                                                                                          <  2:529634‑M1/21‑1 (MQ=255)
                 ttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagcagatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaaacagaaagatggtagcacaacaGTGCAGACGTTATtgcagcag                                                                                                          <  2:217651‑M1/21‑2 (MQ=255)
                           acgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGTGCTGGCGTTATTGCCGCATTaaaacaaaa                                                                                                <  1:84245‑M1/31‑1 (MQ=255)
                           acgcaccaccccggcagtagcggaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGTGCTGGCGTTATTGCCGCATTaaaacaaaa                                                                                                >  1:150662‑M1/113‑143 (MQ=255)
                                 caccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacgctaaatcagtaagttggcagcatcaccGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCaa                                                                                          <  2:52638‑M1/37‑1 (MQ=255)
                                         cagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGTGCTGGCGTTATTGCCGCATTAAAACCAAACACCAAATGGGACt                                                                                  <  1:517457‑M1/45‑1 (MQ=255)
                                                  aacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGa                                                                         <  1:393389‑M1/54‑1 (MQ=255)
                                                    cagcagggcaagcagatagaaacagaagcaactggagcacctcaaaaacaccatcataaactaaatcagtaagttgacagcatcaccGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATg                                                                       >  2:667730‑M1/88‑143 (MQ=255)
                                                               gccaatagaaaccgaagccaccggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAAt                                                            >  1:417072‑M1/77‑143 (MQ=255)
                                                                       acccagcagccactggagcacctcaaaacccccctcatacactcaatcagtaagttggcagcatcaccGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCgggg                                                    >  1:8653‑M1/69‑143 (MQ=255)
                                                                       aaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtacgttggcagcatcaccGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAAGGACCgggg                                                    <  2:581740‑M1/75‑1 (MQ=255)
                                                                               gccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCGGGGTTGTTATc                                            >  1:529634‑M1/61‑143 (MQ=255)
                                                                                ccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGTACTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCGGGGTTGTTATcc                                           <  2:699118‑M1/84‑1 (MQ=255)
                                                                                 cactgcagcacctcaaaaacacctgcatacactaaatcagtaagttggcagcatcaccGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCGGGGTTGTTATccc                                          >  2:170198‑M1/59‑143 (MQ=255)
                                                                                      gagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCGGGGTTGTTATCCCCAGtt                                     <  1:499695‑M1/90‑1 (MQ=255)
                                                                                          acctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCGGGGTTGTTATACGCAGTTTtgt                                 <  2:216303‑M1/94‑1 (MQ=255)
                                                                                           gctcaaaaacaccgtcatacactaaatcagtaagtgggcagcatcaccGCGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCGGGGTTGTTATCCCCAGTTTtgtg                                >  1:340864‑M1/49‑143 (MQ=255)
                                                                                           cctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGTGCTGGCGTTATTGCCGCATTAAAATAAAACTCCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCGGGGTTGTTATCCCCAGTTTtgtg                                >  1:163637‑M1/49‑143 (MQ=255)
                                                                                           ccgcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCGGGGTTGTTATCCCCAGTTTtgtg                                >  1:371653‑M1/49‑143 (MQ=255)
                                                                                            ctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGTGCTGGCGTTATTGCCGCATTAAAACAAAGCACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCGGGGTTGTTATCCCCAGTTTTGTgg                               <  1:546506‑M1/96‑1 (MQ=255)
                                                                                             tcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGGGATGGGGCTGGCAATGACCGGGGTTGATatcaccagtatggcggt                              <  2:354857‑M1/97‑9 (MQ=255)
                                                                                                  aacaccatcattcactaaatcagtaagttggcagcatcaccGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCGGGGTTGTTATCCCCAGTTTTGTGGTTGCAc                         >  2:199630‑M1/42‑143 (MQ=255)
                                                                                                       catcatacactaaatcagtaagttggcagcatcaccGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCGGGGTTGTTATCCCCAGTTTTGTGGTTGCACCatta                    <  1:573055‑M1/107‑1 (MQ=255)
                                                                                                                        gtaagttggcagcatcaccGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCGGGGTTGTTATCCCCAGTTTTGTGGTTGCACCATTATTAGTCATGATATTTGc   <  1:130515‑M1/124‑1 (MQ=255)
                                                                                                                         taagttggcagcatcaccGTGCTGGCGTTATTGCCTCATTAAAACGAAACACAAAATGGGTCTATACCGTGAGGTGGCTGGCAAGGACCAGGGTGGTTATCTCCAGTTTTGTGGTTGCACTATTATCAGTCATGATATTTGCg  <  2:496253‑M1/125‑1 (MQ=255)
                                                                                                                                           |                                                                                                                            
AAACAACTGGCGCACGGTGATTTCGGTCCATCGTTTAAATATAAAGATTATTCGGTCAATGACTTGGTTGCATCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCGGGGTTGTTATCCCCAGTTTTGTGGTTGCACCATTATTAGTCATGATATTTGCG  >  NC_000913/1303100‑1303363

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.