| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1303239 = | 0 (0.000) | 31 (0.780) | 26/284 | 0.5 | 100% | coding (341/921 nt) | oppB | oligopeptide ABC transporter permease |
| ? | NC_000913 | = 1979270 | NA (NA) | intergenic (‑55/‑483) | insA/uspC | IS1 repressor TnpA/universal stress protein | |||||
AAACAACTGGCGCACGGTGATTTCGGTCCATCGTTTAAATATAAAGATTATTCGGTCAATGACTTGGTTGCATCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCGGGGTTGTTATCCCCAGTTTTGTGGTTGCACCATTATTAGTCATGATATTTGCG > NC_000913/1303100‑1303363 | ctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGTGc < 2:167895‑M1/4‑1 (MQ=255) gtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatcgaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGTGCTGGCg < 2:484318‑M1/9‑1 (MQ=255) cggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGTGCTGGCGTTa < 1:601680‑M1/12‑1 (MQ=255) cggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagctggcagcatcaccGTGCTGGcgtga < 2:525785‑M1/12‑3 (MQ=255) tgttgcttgccgttacgcacccccccgtcattagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGTGCTGGCGTTATTGcc > 2:73272‑M1/127‑143 (MQ=255) ttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGTGCTGGCGTTATTGCCGCAt < 2:163637‑M1/21‑1 (MQ=255) ttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGTGCTGGCGTTATTGCCGCAt < 2:529634‑M1/21‑1 (MQ=255) ttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagcagatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaaacagaaagatggtagcacaacaGTGCAGACGTTATtgcagcag < 2:217651‑M1/21‑2 (MQ=255) acgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGTGCTGGCGTTATTGCCGCATTaaaacaaaa < 1:84245‑M1/31‑1 (MQ=255) acgcaccaccccggcagtagcggaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGTGCTGGCGTTATTGCCGCATTaaaacaaaa > 1:150662‑M1/113‑143 (MQ=255) caccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacgctaaatcagtaagttggcagcatcaccGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCaa < 2:52638‑M1/37‑1 (MQ=255) cagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGTGCTGGCGTTATTGCCGCATTAAAACCAAACACCAAATGGGACt < 1:517457‑M1/45‑1 (MQ=255) aacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGa < 1:393389‑M1/54‑1 (MQ=255) cagcagggcaagcagatagaaacagaagcaactggagcacctcaaaaacaccatcataaactaaatcagtaagttgacagcatcaccGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATg > 2:667730‑M1/88‑143 (MQ=255) gccaatagaaaccgaagccaccggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAAt > 1:417072‑M1/77‑143 (MQ=255) acccagcagccactggagcacctcaaaacccccctcatacactcaatcagtaagttggcagcatcaccGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCgggg > 1:8653‑M1/69‑143 (MQ=255) aaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtacgttggcagcatcaccGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAAGGACCgggg < 2:581740‑M1/75‑1 (MQ=255) gccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCGGGGTTGTTATc > 1:529634‑M1/61‑143 (MQ=255) ccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGTACTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCGGGGTTGTTATcc < 2:699118‑M1/84‑1 (MQ=255) cactgcagcacctcaaaaacacctgcatacactaaatcagtaagttggcagcatcaccGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCGGGGTTGTTATccc > 2:170198‑M1/59‑143 (MQ=255) gagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCGGGGTTGTTATCCCCAGtt < 1:499695‑M1/90‑1 (MQ=255) acctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCGGGGTTGTTATACGCAGTTTtgt < 2:216303‑M1/94‑1 (MQ=255) gctcaaaaacaccgtcatacactaaatcagtaagtgggcagcatcaccGCGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCGGGGTTGTTATCCCCAGTTTtgtg > 1:340864‑M1/49‑143 (MQ=255) cctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGTGCTGGCGTTATTGCCGCATTAAAATAAAACTCCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCGGGGTTGTTATCCCCAGTTTtgtg > 1:163637‑M1/49‑143 (MQ=255) ccgcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCGGGGTTGTTATCCCCAGTTTtgtg > 1:371653‑M1/49‑143 (MQ=255) ctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGTGCTGGCGTTATTGCCGCATTAAAACAAAGCACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCGGGGTTGTTATCCCCAGTTTTGTgg < 1:546506‑M1/96‑1 (MQ=255) tcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGGGATGGGGCTGGCAATGACCGGGGTTGATatcaccagtatggcggt < 2:354857‑M1/97‑9 (MQ=255) aacaccatcattcactaaatcagtaagttggcagcatcaccGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCGGGGTTGTTATCCCCAGTTTTGTGGTTGCAc > 2:199630‑M1/42‑143 (MQ=255) catcatacactaaatcagtaagttggcagcatcaccGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCGGGGTTGTTATCCCCAGTTTTGTGGTTGCACCatta < 1:573055‑M1/107‑1 (MQ=255) gtaagttggcagcatcaccGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCGGGGTTGTTATCCCCAGTTTTGTGGTTGCACCATTATTAGTCATGATATTTGc < 1:130515‑M1/124‑1 (MQ=255) taagttggcagcatcaccGTGCTGGCGTTATTGCCTCATTAAAACGAAACACAAAATGGGTCTATACCGTGAGGTGGCTGGCAAGGACCAGGGTGGTTATCTCCAGTTTTGTGGTTGCACTATTATCAGTCATGATATTTGCg < 2:496253‑M1/125‑1 (MQ=255) | AAACAACTGGCGCACGGTGATTTCGGTCCATCGTTTAAATATAAAGATTATTCGGTCAATGACTTGGTTGCATCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCGGGGTTGTTATCCCCAGTTTTGTGGTTGCACCATTATTAGTCATGATATTTGCG > NC_000913/1303100‑1303363 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |