| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,815,858 | Δ82 bp | [rph]–[rph] | [rph], [rph] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3815858 | 3815939 | 82 | 38 [0] | [0] 38 | [rph]–[rph] | [rph], [rph] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3815857 | 0 (0.000) | 36 (0.970) | 32/264 | 0.1 | 100% | pseudogene (24/48 nt) | rph | ribonuclease PH (defective),enzyme, Degradation of RNA, RNase PH |
| ? | NC_000913 | 3815940 = | 0 (0.000) | pseudogene (609/669 nt) | rph | ribonuclease PH (defective),enzyme, Degradation of RNA, RNase PH | |||||
CCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCG > NC_000913/3815719‑3815994 | ccTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAGAAAAAGGCGACTCATCAGTGGCCTTAAAAATCAGTTTGCTAGCGCCGCATTTTGCcgcc > 1:82439‑M1/1‑139 (MQ=255) cttgctAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTATACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccct < 2:443472‑M1/143‑9 (MQ=255) gctAAGCTCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgca < 1:577164‑M1/143‑12 (MQ=255) cgcAAATTCAATAGACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTAAAAAAAAAAAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaa < 2:31547‑M1/143‑18 (MQ=255) aaaTTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCACCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCCCCTAAAAAATCAGTTTGCCAGCGCCCCCTTCGGCcgtctcatgcccttctatga > 1:313413‑M1/1‑123 (MQ=255) atattctggcgCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTCCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgccc < 1:517438‑M1/138‑28 (MQ=255) aTAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgccc > 1:685094‑M1/1‑116 (MQ=255) tGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcactgctgcgcccggcttc > 1:296839‑M1/1‑110 (MQ=255) cgcTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggt < 2:180381‑M1/143‑37 (MQ=255) cgcTGATATGGTGGCATGCCTTCGCTCCTCATCTTACTGTTCTACAGACAAAAGAAAGGCGACGCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggt < 2:337303‑M1/143‑37 (MQ=255) tGATATGGTTTCATTCCTTCGCTCCTCATCTTACTTTTCTACAGACAAGAAAAAGGCGACTCATCAGGCGCCTTAAAAATCTGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcat < 1:279686‑M1/143‑40 (MQ=255) tttCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCATAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcagtgatgcgcccgtcttcggtcatcactacgt > 2:58410‑M1/1‑96 (MQ=255) tCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAACTCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgctcttcactgatgcgcccctcttcgttcttcactactttc > 1:100835‑M1/1‑94 (MQ=255) cATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcctcactacgttca > 1:562646‑M1/1‑93 (MQ=255) atcctttcgctcCTTATCCTCCTTTTCTACAGACAGAAAACTGGCGACTCACCAGTCGCCTTAAAATTCAGTTTGCCGGCGCCTCCTTCTGCcgtcccctgcccttcaatgatgcgcccgtcttcggtcatcactacgttcat < 2:77427‑M1/138‑52 (MQ=255) gCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgccggtcttcggtcatcactacgttcatgt > 1:20839‑M1/1‑90 (MQ=255) gCCCTCTCTCCTCATCTTATTTGTCTACATACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgt < 2:519678‑M1/143‑54 (MQ=255) tcctcATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctct > 1:156104‑M1/1‑82 (MQ=255) tcATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactaccttcatgtcggtctctgcg > 2:125012‑M1/1‑79 (MQ=255) tCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggca < 1:641128‑M1/143‑68 (MQ=255) ttttCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagaggat > 1:122631‑M1/1‑70 (MQ=255) ttttCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgctcatgtcggtctcagcggcagaggct > 2:558129‑M1/1‑70 (MQ=255) ttCTCCAGACAAAAAAAAGGCGACTCGTCAGTCGCCTTAAAACGCAGTTTGCCAGCGCCGCCGTTGGCcgtcccctgcacttccatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttc < 1:623526‑M1/143‑76 (MQ=255) tACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTCAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgctgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagccttcaac > 1:372347‑M1/1‑65 (MQ=255) tACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaac < 1:566608‑M1/143‑79 (MQ=255) aCAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttccgtcatcactacgttcatgtcgctctctgcgtccgcgacttctacgtctt > 2:675239‑M1/1‑60 (MQ=255) aaaaaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattcc > 1:21045‑M1/1‑58 (MQ=255) ttaaggCGACTGATGAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgctgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaccgtattccagcc > 2:273148‑M1/3‑54 (MQ=255) cGACTCACCAGTCGCGTGAAAAACCAGTTTGCCAGCGCCGGCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaa < 2:619203‑M1/143‑96 (MQ=255) gCCTTAAAACTCTGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgctgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagttcgcaaaccgcttcgccgtt < 2:24602‑M1/143‑109 (MQ=255) cTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggccgagtcttcaacgtattccagatcgcaaaccgcttcgccgttca > 1:671645‑M1/1‑33 (MQ=255) cTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttca > 1:652100‑M1/1‑33 (MQ=255) ttAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcac > 1:383298‑M1/1‑32 (MQ=255) tCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtctccaacgtattccagatcgcaaaccgcttcgccggtcaccgttccg > 1:642535‑M1/1‑25 (MQ=255) cAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcctcggtcatcactacgttcatgtcggtgtctgcggcagagcctcccacgtctcccagctcgcacaccgcctcgcccctcaccatcccga > 2:627995‑M1/1‑24 (MQ=255) gccgccTTCTGCcggccctctcactgcactggtgcgcccgtgtccggtcatcactacgtgcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcgg < 2:535550‑M1/143‑132 (MQ=255) cgccTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcccaattccggcagcacctgcggct > 1:73929‑M1/1‑10 (MQ=255) ttCTGCcgtcccctgcacttcaatgatgcgcccgtcttcagtcatcactacgttcatgtcggtctccgcggcagagtcttcaacgtcttccagatcgcaagccgcttcgccgtgcaccataccgacagaaacgcagggaacaa > 2:441786‑M1/1‑6 (MQ=255) | CCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCG > NC_000913/3815719‑3815994 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |