New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1207790 =	31 (0.780)	5 (0.140)	5/252	4.3	14.0%	coding (290/630 nt)	stfP	e14 prophage, uncharacterized protein
	?	NC_000913	1209619 =	34 (0.960)					pseudogene (1/501 nt)	stfE	pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAG  >  NC_000913/1209477‑1209760                                                                                                                                               |                                                                                                                                              gTCTGATAAGCCGTGTCCATTTTCGCGTATGCTTCAGCAGAAAAAGGGGCTCCATTTCATTTCAGCCATGCTGTTGGCGGAGTGTCTGAAGGCCACGTAACCGGGACACCAACATGTAATGCAGAGCCTTCTCCCAAACCAAc                                                                                                                                               <  2:592343/143‑1 (MQ=255)  tCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGTATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCCACAGGTAATGCAGAGCCTCCTCCCAAACCAACg                                                                                                                                              >  2:51659/1‑143 (MQ=255)       tAAGCCTTTGCCAGATCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTAt                                                                                                                                         <  1:581718/143‑1 (MQ=255)           ccTTTCCCAGTTGCGGGTATTCGTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGGCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGaaa                                                                                                                                     <  2:520575/143‑1 (MQ=255)                  cAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGACAGTgcaga                                                                                                                              >  2:410011/1‑143 (MQ=255)                           gTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTGTATGAAAATGGAGCAATAACAAg                                                                                                                     >  1:571712/1‑143 (MQ=255)                                    gctggAAAAAGCGGTACCATTGCATTTCAGCCAGCCTTTTGGCGGAGGGGATGAAGGCCACCGAACAGGGACACCAACATGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGca                                                                                                            <  2:607078/139‑1 (MQ=255)                                                 taactaTTGCATTTCAGCCAGCTTGTTGGCGGAGTGGCGGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCttt                                                                                               <  1:69842/138‑1 (MQ=255)                                                  cACGATTGCACTTGAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCtttt                                                                                              <  2:278759/143‑1 (MQ=255)                                                      cttGCATGTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGTACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCa                                                                                          <  2:536961/142‑1 (MQ=255)                                                        tGCATTTCAGCCAGCCTGTTGGCGGAGCGACTGAAGTCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAgg                                                                                        >  2:463195/1‑143 (MQ=255)                                                            tttCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGGAGAGCCTTCTCCCAAACCACCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAgggggc                                                                                    >  2:603752/1‑142 (MQ=255)                                                                agccagccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAGTTa                                                                                >  2:654501/1‑143 (MQ=255)                                                                    agccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACGAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACAt                                                                            <  2:496819/143‑1 (MQ=255)                                                                       cTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGATATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCt                                                                         >  2:592912/1‑143 (MQ=255)                                                                         gTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTATCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTa                                                                       >  2:420654/1‑143 (MQ=255)                                                                            ggggtgggggCGGAATGCCACGGAAGCGGGACACCGTTAGGTAATGGAGGGCCTTTTCGCAATTCAACGTTTATGATAATGAAGAAATAAGAAGGAAGTGTTGTTGGGCTTGCTTTTACCAGGGGGATTTAACATGCTTATTg                                                                    <  2:211174/135‑1 (MQ=255)                                                                              ttccgtggccttcagCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGc                                                                  >  1:651673/15‑143 (MQ=255)                                                                               ggAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATACATATTGGCt                                                                 >  1:166603/1‑143 (MQ=255)                                                                                gcgTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTa                                                                <  1:499745/141‑1 (MQ=255)                                                                                 agcggCTGAAGCCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTAt                                                               <  1:8101/140‑1 (MQ=255)                                                                                  gTGGCTGAAGGCCACGGAACCGGGACACCAACAGGCAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATg                                                              >  2:664254/1‑143 (MQ=255)                                                                                       tGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTAcgc                                                         >  1:555423/1‑143 (MQ=255)                                                                                         aaGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAAAGGCAAACAACCTGGTTTTGCCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGt                                                       >  1:95291/1‑143 (MQ=255)                                                                                           ggCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGCTTACGAAAATGAAGAAATCACAAGCAAATGGCATCATTCCCGCGTGTACCAGGGGGGATAAACATGCACATTAGCCATATAcgggacg                                                     >  2:523571/1‑138 (MQ=255)                                                                                            gCCACGGAACCGGGACACCAACAGGTGATGCAGAGCCTTCTCCCAAACCAACGTTGATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACTAGGAGGATTTAACATGCTTATTGGCTATGTGCGCGTATc                                                    >  2:667244/1‑143 (MQ=255)                                                                                                   aaCCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAAt                                             <  1:130238/143‑1 (MQ=255)                                                                                                       gggACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAAAGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCTGATCACCACATGAcc                                         >  1:446574/1‑143 (MQ=255)                                                                                                        gaacacCATCTGTTAATGCAGATTCTTCTCACAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCa                                        <  1:255651/141‑1 (MQ=255)                                                                                                            acCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGTGTATCAACAAATGACCAGAac                                    >  1:141894/1‑143 (MQ=255)                                                                                                            acCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGTGTATCAACAAATGACCAGAac                                    >  1:141888/1‑143 (MQ=255)                                                                                                                     tAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTa                           >  2:235785/1‑143 (MQ=255)                                                                                                                      aaTGCAGAGCCTTCTGCCAAAGCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTAc                          <  2:391813/143‑1 (MQ=255)                                                                                                                            gagCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTa                    >  2:250193/1‑143 (MQ=255)                                                                                                                             ctccTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCCGAACACAGATCTACAACTTaa                   >  1:530996/3‑143 (MQ=255)                                                                                                                               ccTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATg                 >  2:192945/1‑143 (MQ=255)                                                                                                                                      ccAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTGTCAACAAATGAACAGACCACAGACGTAACACGCAATGCGCCGaa          >  2:450899/1‑143 (MQ=255)                                                                                                                                       cAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGCAc         >  1:153036/1‑143 (MQ=255)                                                                                                                                             aaCATTTATGAAAATGAAGAAATAATCAGCTAATGGCATCTTTTTTGGTGTTCCCACACCCACTTGATATTCTTATTGGCTATGTACGCGTATCAACAAATGGCCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCa   <  2:680619/143‑1 (MQ=255)                                                                                                                                              ccGTGTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAg  <  1:215302/142‑1 (MQ=255)                                                                                                                                               |                                                                                                                                              GTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAG  >  NC_000913/1209477‑1209760

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.