New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1207790 =	41 (1.070)	3 (0.090)	3/252	5.1	8.1%	coding (290/630 nt)	stfP	e14 prophage, uncharacterized protein
	?	NC_000913	1209619 =	32 (0.940)					pseudogene (1/501 nt)	stfE	pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGC  >  NC_000913/1207654‑1207931                                                                                                                                         |                                                                                                                                              gAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTCAGCCCCAAGAATGCGTTTGGCGGTATCAAATCGGATGGCACAGTGCAAACCGCTCTCGCAAAGCGTGGtcg                                                                                                                                         >  1:518363/1‑141 (MQ=17)  cggccgccGGTGCCAGCCTGGAGAAGGGGCTGCCCGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAACCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTg                                                                                                                                        <  1:621608/137‑1 (MQ=17)   ggCAGCCGGTGCCAGCCTGGAGAGGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTgg                                                                                                                                       <  1:370528/143‑1 (MQ=255)   ggCACCCGGGGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTgg                                                                                                                                       <  2:129376/143‑1 (MQ=255)    gCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTCTGGCGATATCACATCGGATGGCACTGTGCAAACGGCTCGCGGAAACCGTGGCTTggg                                                                                                                                      >  1:211027/1‑143 (MQ=17)     cATCCGGGGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGga                                                                                                                                     <  2:221768/143‑1 (MQ=255)      gtCCGGTGCCAGCCTGGCGAGGGGGCGGCACGACCAGTGACTGACCGCACTTCGCGTGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAGATCGGATGGCACTGTGCAAACGGATGTCGAAAACCTTGGTTTGGgag                                                                                                                                    <  1:410657/142‑1 (MQ=17)       gccGGTGCGGGCCTGGAGAAGGGGCGGCACGACCAGTTAGTTACCGCTCTCCGTGCGTTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGgaga                                                                                                                                   <  1:439509/142‑1 (MQ=14)        ccGGTGCCAGCCGGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGaa                                                                                                                                  <  2:468077/143‑1 (MQ=255)                     gtggaggtcgcagcACGACCAGTTAGTTCGTGCACTTTGCGCGTTGTTGTTAAGCCGCGAGAATCCGGTTGGCGATCTCAAATCGGATGGCACTGTGCAAACGGCTCTCGAACACCTTGGTTTGGGAGAAGGAGCAAAACTCa                                                                                                                     <  1:134415/131‑1 (MQ=255)                      gagaAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAAGCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCaa                                                                                                                    <  2:611641/143‑1 (MQ=255)                      aagcaGGGTCGGCACGACCAGTTACGTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCaa                                                                                                                    <  2:519682/139‑1 (MQ=255)                       agaTGGGGCGGTACGACTAGTTACTTACCGCACTTGGCGCGCTGCTGTTATGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAAt                                                                                                                   <  1:363493/143‑1 (MQ=18)                              gcggcACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAACTCGGATGGCACTGTGCAAACGGCTCCCGCAAACCTTGGTTTGGGAGAAGGAGCAAAACTCACTgcagcca                                                                                                            >  1:442796/1‑141 (MQ=255)                                  cACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCCACGGc                                                                                                        >  2:257103/1‑143 (MQ=255)                                     gagcagtaccatacCGCACTACGCGCACGGCGGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTAc                                                                                                     <  2:229827/132‑1 (MQ=21)                                            tacttacCGCACTTCGCGCGCTGCTGTTAAGCCGCACGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCCCGAAAACCTTAGATTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGa                                                                                              >  1:12319/1‑143 (MQ=255)                                             acttacCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGAc                                                                                             <  2:441204/143‑1 (MQ=255)                                                               gctgctGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATGAGGACGCCCCGGGTTCATAGcga                                                                           >  2:220861/1‑141 (MQ=255)                                                                       tAAGCCGCAAGAACCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGtt                                                                   <  2:182534/143‑1 (MQ=255)                                                                         aggcgcgAGAATCCGTTTGGCGATATCAGATCGGGTGGCACTGTGCAATCGGCTCTCGACAACCTTGGTTTGGGAGAAGGAGCAAAACTCAAGGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTAt                                                                 <  1:296525/140‑1 (MQ=37)                                                                           ccGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATgc                                                               >  2:321955/1‑142 (MQ=255)                                                                             gCACGAAGCGGTTTGGCGTTATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGTAGTAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATCCCGGTTATGAtt                                                             <  1:207880/143‑1 (MQ=37)                                                                              cAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGCTtg                                                            >  2:141484/1‑143 (MQ=255)                                                                                aGAATCCGTTTGGCGATACCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATtggt                                                          <  2:105195/143‑1 (MQ=255)                                                                                 gAATCCGGTGGGCGATATCACATCGTATGGCACTGTGCAAACGGCTCTCGAAACCCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATtggtg                                                         <  1:250661/143‑1 (MQ=255)                                                                                    tCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGCCGCACCGGCTTCATCGCTATACCGGTTATGATTGGTGGTa                                                      >  2:275352/1‑143 (MQ=255)                                                                                        tttGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGa                                                  <  2:657227/143‑1 (MQ=255)                                                                                        gttGTCGATATCTAGTCGGATGCCATTTTGCAAACGGCTCTCGAAAGCCTTGGTTTGGGAGAAGGAGCACAACTCAATGCAGCAACGGCGACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGa                                                  <  1:436994/142‑1 (MQ=255)                                                                                         gtGGCCATATCGAATCGGATGGCACTATGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGACCAAAACTTTTTGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAg                                                 <  1:326234/142‑1 (MQ=38)                                                                                             cggtgtcgaaTCGGAGGGGAGTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAAt                                             <  1:257103/135‑1 (MQ=39)                                                                                                tatCAAATCGGATGGCACTGGGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACTGGGTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAg                                          <  1:620746/143‑1 (MQ=255)                                                                                                 atCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACGTTGGTTTGGGAGAAGGAGCAAACCTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGt                                         <  2:257626/143‑1 (MQ=255)                                                                                                 atCAAATCGGATGGCACGGTGCAAACGGCGCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGt                                         <  2:442796/143‑1 (MQ=255)                                                                                                          gATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCa                                <  2:615225/143‑1 (MQ=255)                                                                                                               cACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTCTTGAGCAATCAGTAATCATTCAGTggg                           >  1:67818/1‑143 (MQ=255)                                                                                                                      cAAGCGGCTCTGGGAGAGCGTGGTTTGGGGGAAGGAGGAAATCTCAATGCAGCAACGGCTACATTAGGACGCAGCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGaa                    <  1:337245/143‑1 (MQ=255)                                                                                                                          cGGCTTTCGAAAATCTTGGTTTGGGAGAAGGAGCAAAACTCAAGGCAGCAACGGCTACATGAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGcc                <  2:512345/143‑1 (MQ=255)                                                                                                                              tctcGAAAACATTGGTTTGGGAGAAGGAGCAAAACTCAATCCAGCAACGGCTACATTAGGACGCAACGGTTTCATCGCTATACCGGTTATGGATGGTGGTATTGAGCAATCAGTAAGCAGTCAGCGTGGGTGGGAGGCCGCac            >  1:145088/1‑142 (MQ=255)                                                                                                                                    aaaCCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATCGCCATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAACAGCAt      >  1:186725/1‑143 (MQ=255)                                                                                                                                      acgttGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCt    >  2:447310/4‑143 (MQ=255)                                                                                                                                        cTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTCATGAGTGGTGGTATTGAGCAATCAGTCACCCTTCAGTGGGGGGGGAATGCCGCCAAAGCAACTGc  >  1:311278/1‑143 (MQ=255)                                                                                                                                         |                                                                                                                                              GAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGC  >  NC_000913/1207654‑1207931

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.