New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1303239 =	0 (0.000)	30 (0.780)	24/284	0.6	100%	coding (341/921 nt)	oppB	oligopeptide ABC transporter permease
	?	NC_000913	= 1979270	NA (NA)					intergenic (‑55/‑483)	insA/uspC	IS1 repressor TnpA/universal stress protein

TGAAACAACTGGCGCACGGTGATTTCGGTCCATCGTTTAAATATAAAGATTATTCGGTCAATGACTTGGTTGCATCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCGGGGTTGTTATCCCCAGTTTTGTGGTTGCACCATTATTAGTCATGATATTTGCGATCATTTTGCATTGG  >  NC_000913/1303098‑1303378                                                                                                                                              |                                                                                                                                            cgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGt                                                                                                                                            <  2:541688‑M1/2‑1 (MQ=255)              cggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGTGCTGGCGTTATTg                                                                                                                               >  2:145856‑M1/129‑143 (MQ=255)                     tttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGTGCTGGCGTTATTGCCGCAtt                                                                                                                        <  2:244109‑M1/22‑1 (MQ=255)                         ctgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGTGCTGGCGTTATTGCCGCATTaaaa                                                                                                                    >  1:635266‑M1/118‑143 (MQ=255)                                gcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtacgttcgcagcatcaccGCGCTGGCGTTATCGCCGCATTAacacaaaaca                                                                                                             <  1:536585‑M1/33‑1 (MQ=255)                                 caccaccccgtcagtagctgaacaggagggacagctgatagaaaccgaaggcactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGTGCTGGCGTTATTGCCGCATTAAAACAAAacac                                                                                                            >  2:668694‑M1/110‑143 (MQ=255)                                 caccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacacaatcatacactaaatcagtaagttggcagcatcaccGTGCTGGCGTTATTGCCCCATTaaaacaaaacaa                                                                                                            <  1:289361‑M1/34‑2 (MQ=255)                                       cccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGTGCTGGCGTTATTGGCGCATTAAGACAAAACagcaactg                                                                                                      <  2:4478‑M1/40‑4 (MQ=255)                                              gtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtcagttggcaccatcaccATGCTGGCGTTATTGCCGCATTAAAACAACCAACCAAATAGGACtat                                                                                               <  1:218080‑M1/47‑1 (MQ=255)                                                                 agctgataggaacagaagccaccggagcaccgcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCaa                                                                            >  1:354986‑M1/78‑143 (MQ=255)                                                                    tgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGa                                                                         <  2:116621‑M1/69‑1 (MQ=255)                                                                    tgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaaccagtaagttggcagcatccccGTGCTGGCGTTATCGCCGCATTAAAACAAAACACCAAATGGGACTACACCGTCATGGGGCTGACAAtgc                                                                         <  1:244246‑M1/69‑2 (MQ=255)                                                                    tgatagaaacagaagccactagagcacctcaaaaacaccatcatacactacatcagtaagttggcagcatcaccGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGCAGCAggcaacga                                                                         <  1:210284‑M1/69‑4 (MQ=255)                                                                         gaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAACGGGACTATACCGCGCTGGGGCTGGCAATGCCCggg                                                                    <  1:448524‑M1/74‑1 (MQ=255)                                                                           aacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGTGCTGGCGTTATTACCGCATTAAAACCAAACACCAAATGGGACTATACCGTGATGGGGCTG‑CAATGAccggggct                                                                 <  1:585304‑M1/76‑3 (MQ=255)                                                                           aacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGTGCTGGCGTTATCGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACcggggg                                                                  <  1:663587‑M1/76‑2 (MQ=255)                                                                            acagaagccgctggagcacctcaaaaacaccatcatacactaaagcagtaagttggcagcaacaccGTGCTGGCGATATTGCCGCATTAAAACAAAACACCACATGGGACTATACCGTGATGAGGCCGGCAATGCCCGGGgtt                                                                 <  1:66068‑M1/77‑1 (MQ=255)                                                                            acagaagccactggagcacctcaaaacccacttcttacactaaatcagtaagttggcagcatcaccGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCGGGgtt                                                                 >  1:652269‑M1/67‑143 (MQ=255)                                                                            acagaagccactggagcacctcaaaaacaccatcatacgctaaaaccattatctaagatcatcaccGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCGGGgtt                                                                 >  2:490624‑M1/67‑143 (MQ=255)                                                                                                tcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCGGGGTTGTTATCCCGAGTTTTGTGGt                                             <  2:177316‑M1/97‑1 (MQ=255)                                                                                                 caaaaacaccatcatacactaaatcagtaagttggcagcatcaccGTGCTGGCGTTATTGCCGGATTAAAACAAAACACCAAATGGGACTATACCGGGATGGGGCTGGCAATGACCGGGGGTGTTATCCCCAGTTTTGTGgtg                                            <  1:555431‑M1/98‑2 (MQ=255)                                                                                                 caaaaacaccatcatacactaaatcagtaagttggcagcatcaccGTGCTGATGTTATTGCCGCATTAACACAAGACACCAAGTGGGACTATACCGTGAGGGGGCTGGCAATGACCGGGGGTGTTACCCCCAGGTTTgtgggg                                            <  1:518631‑M1/98‑3 (MQ=255)                                                                                                                    taaatcagtaagttggcagcatcaccGTGCTGGCGTTATTGCCGAATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCGGGGTTGTTATCCACAGTTGTGTGGTTGCACCATGAAGAGTCAtgc                         <  1:608643‑M1/117‑2 (MQ=255)                                                                                                                          agtaagttggcagcatcaccGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCGGGGTTGTTATCCCCAGTTTTGTGGTTGCACCATTATTAGTCATGATATTTg                   <  2:380416‑M1/123‑1 (MQ=255)                                                                                                                                  ggcagcatcaccGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATCCCGTGATGGGGCTGGCAATGACCGGGGTTGTTATCCCCAGTTTTGTGGTTGCACCATTATTAGTCATGATATTTGCGATCAtt           >  2:432023‑M1/13‑143 (MQ=255)                                                                                                                                    cagcatcaccGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCGGGGTTGTTATCCCCAGTTTTGTGGTTGCACCATTATTAGTCATGATATTTGCGATCAtttt         >  2:434354‑M1/11‑143 (MQ=255)                                                                                                                                    cagcagcaccGTGCTGGCGTGATTGCCGCATTAAAACAAAACACCAAATGGTACTATACCGTGATGGGGCTGGCAATGACCGGGGTTGTTATCCCCAGTTTTGTGGTTGCACCATTATTAGTCATGATATTTGCGATCAtttt         >  2:536585‑M1/11‑143 (MQ=255)                                                                                                                                       catcaccGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCGGGGTTGTTATCCCCAGTTTTGTGGTTGCACCATTATTAGTCATGATATTTGCGATCATTTTGCa      <  2:320824‑M1/136‑1 (MQ=255)                                                                                                                                           accGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCGGGGTTGTTATCCCCAGTTTTGTGGTTGCACCATTATTAGTCATGATATTTGCGATCATTTTGCATTgg  >  2:362509‑M1/4‑143 (MQ=255)                                                                                                                                           accGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCGGGGTTGTTATCCACAGTCTTGTGGTTGCACCATTATTAGTCATGATATTTGCGCTcgttttggatggg  <  2:554629‑M1/140‑7 (MQ=255)                                                                                                                                              |                                                                                                                                            TGAAACAACTGGCGCACGGTGATTTCGGTCCATCGTTTAAATATAAAGATTATTCGGTCAATGACTTGGTTGCATCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCGGGGTTGTTATCCCCAGTTTTGTGGTTGCACCATTATTAGTCATGATATTTGCGATCATTTTGCATTGG  >  NC_000913/1303098‑1303378

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.