New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1303239 =0 (0.000)30 (0.780) 24/284 0.6 100% coding (341/921 nt) oppB oligopeptide ABC transporter permease
?NC_000913 = 1979270 NA (NA)intergenic (‑55/‑483) insA/uspC IS1 repressor TnpA/universal stress protein

TGAAACAACTGGCGCACGGTGATTTCGGTCCATCGTTTAAATATAAAGATTATTCGGTCAATGACTTGGTTGCATCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCGGGGTTGTTATCCCCAGTTTTGTGGTTGCACCATTATTAGTCATGATATTTGCGATCATTTTGCATTGG  >  NC_000913/1303098‑1303378
                                                                                                                                             |                                                                                                                                           
cgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGt                                                                                                                                            <  2:541688‑M1/2‑1 (MQ=255)
             cggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGTGCTGGCGTTATTg                                                                                                                               >  2:145856‑M1/129‑143 (MQ=255)
                    tttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGTGCTGGCGTTATTGCCGCAtt                                                                                                                        <  2:244109‑M1/22‑1 (MQ=255)
                        ctgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGTGCTGGCGTTATTGCCGCATTaaaa                                                                                                                    >  1:635266‑M1/118‑143 (MQ=255)
                               gcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtacgttcgcagcatcaccGCGCTGGCGTTATCGCCGCATTAacacaaaaca                                                                                                             <  1:536585‑M1/33‑1 (MQ=255)
                                caccaccccgtcagtagctgaacaggagggacagctgatagaaaccgaaggcactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGTGCTGGCGTTATTGCCGCATTAAAACAAAacac                                                                                                            >  2:668694‑M1/110‑143 (MQ=255)
                                caccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacacaatcatacactaaatcagtaagttggcagcatcaccGTGCTGGCGTTATTGCCCCATTaaaacaaaacaa                                                                                                            <  1:289361‑M1/34‑2 (MQ=255)
                                      cccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGTGCTGGCGTTATTGGCGCATTAAGACAAAACagcaactg                                                                                                      <  2:4478‑M1/40‑4 (MQ=255)
                                             gtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtcagttggcaccatcaccATGCTGGCGTTATTGCCGCATTAAAACAACCAACCAAATAGGACtat                                                                                               <  1:218080‑M1/47‑1 (MQ=255)
                                                                agctgataggaacagaagccaccggagcaccgcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCaa                                                                            >  1:354986‑M1/78‑143 (MQ=255)
                                                                   tgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGa                                                                         <  2:116621‑M1/69‑1 (MQ=255)
                                                                   tgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaaccagtaagttggcagcatccccGTGCTGGCGTTATCGCCGCATTAAAACAAAACACCAAATGGGACTACACCGTCATGGGGCTGACAAtgc                                                                         <  1:244246‑M1/69‑2 (MQ=255)
                                                                   tgatagaaacagaagccactagagcacctcaaaaacaccatcatacactacatcagtaagttggcagcatcaccGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGCAGCAggcaacga                                                                         <  1:210284‑M1/69‑4 (MQ=255)
                                                                        gaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAACGGGACTATACCGCGCTGGGGCTGGCAATGCCCggg                                                                    <  1:448524‑M1/74‑1 (MQ=255)
                                                                          aacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGTGCTGGCGTTATTACCGCATTAAAACCAAACACCAAATGGGACTATACCGTGATGGGGCTGCAATGAccggggct                                                                 <  1:585304‑M1/76‑3 (MQ=255)
                                                                          aacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGTGCTGGCGTTATCGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACcggggg                                                                  <  1:663587‑M1/76‑2 (MQ=255)
                                                                           acagaagccgctggagcacctcaaaaacaccatcatacactaaagcagtaagttggcagcaacaccGTGCTGGCGATATTGCCGCATTAAAACAAAACACCACATGGGACTATACCGTGATGAGGCCGGCAATGCCCGGGgtt                                                                 <  1:66068‑M1/77‑1 (MQ=255)
                                                                           acagaagccactggagcacctcaaaacccacttcttacactaaatcagtaagttggcagcatcaccGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCGGGgtt                                                                 >  1:652269‑M1/67‑143 (MQ=255)
                                                                           acagaagccactggagcacctcaaaaacaccatcatacgctaaaaccattatctaagatcatcaccGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCGGGgtt                                                                 >  2:490624‑M1/67‑143 (MQ=255)
                                                                                               tcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCGGGGTTGTTATCCCGAGTTTTGTGGt                                             <  2:177316‑M1/97‑1 (MQ=255)
                                                                                                caaaaacaccatcatacactaaatcagtaagttggcagcatcaccGTGCTGGCGTTATTGCCGGATTAAAACAAAACACCAAATGGGACTATACCGGGATGGGGCTGGCAATGACCGGGGGTGTTATCCCCAGTTTTGTGgtg                                            <  1:555431‑M1/98‑2 (MQ=255)
                                                                                                caaaaacaccatcatacactaaatcagtaagttggcagcatcaccGTGCTGATGTTATTGCCGCATTAACACAAGACACCAAGTGGGACTATACCGTGAGGGGGCTGGCAATGACCGGGGGTGTTACCCCCAGGTTTgtgggg                                            <  1:518631‑M1/98‑3 (MQ=255)
                                                                                                                   taaatcagtaagttggcagcatcaccGTGCTGGCGTTATTGCCGAATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCGGGGTTGTTATCCACAGTTGTGTGGTTGCACCATGAAGAGTCAtgc                         <  1:608643‑M1/117‑2 (MQ=255)
                                                                                                                         agtaagttggcagcatcaccGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCGGGGTTGTTATCCCCAGTTTTGTGGTTGCACCATTATTAGTCATGATATTTg                   <  2:380416‑M1/123‑1 (MQ=255)
                                                                                                                                 ggcagcatcaccGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATCCCGTGATGGGGCTGGCAATGACCGGGGTTGTTATCCCCAGTTTTGTGGTTGCACCATTATTAGTCATGATATTTGCGATCAtt           >  2:432023‑M1/13‑143 (MQ=255)
                                                                                                                                   cagcatcaccGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCGGGGTTGTTATCCCCAGTTTTGTGGTTGCACCATTATTAGTCATGATATTTGCGATCAtttt         >  2:434354‑M1/11‑143 (MQ=255)
                                                                                                                                   cagcagcaccGTGCTGGCGTGATTGCCGCATTAAAACAAAACACCAAATGGTACTATACCGTGATGGGGCTGGCAATGACCGGGGTTGTTATCCCCAGTTTTGTGGTTGCACCATTATTAGTCATGATATTTGCGATCAtttt         >  2:536585‑M1/11‑143 (MQ=255)
                                                                                                                                      catcaccGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCGGGGTTGTTATCCCCAGTTTTGTGGTTGCACCATTATTAGTCATGATATTTGCGATCATTTTGCa      <  2:320824‑M1/136‑1 (MQ=255)
                                                                                                                                          accGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCGGGGTTGTTATCCCCAGTTTTGTGGTTGCACCATTATTAGTCATGATATTTGCGATCATTTTGCATTgg  >  2:362509‑M1/4‑143 (MQ=255)
                                                                                                                                          accGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCGGGGTTGTTATCCACAGTCTTGTGGTTGCACCATTATTAGTCATGATATTTGCGCTcgttttggatggg  <  2:554629‑M1/140‑7 (MQ=255)
                                                                                                                                             |                                                                                                                                           
TGAAACAACTGGCGCACGGTGATTTCGGTCCATCGTTTAAATATAAAGATTATTCGGTCAATGACTTGGTTGCATCCAGTTTTCCCGTTTCTGCCAAACTGGGAGCCGCAGCATTTTTCCTTGCGGTAATACTGGGTGTTAGTGCTGGCGTTATTGCCGCATTAAAACAAAACACCAAATGGGACTATACCGTGATGGGGCTGGCAATGACCGGGGTTGTTATCCCCAGTTTTGTGGTTGCACCATTATTAGTCATGATATTTGCGATCATTTTGCATTGG  >  NC_000913/1303098‑1303378

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.