| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2662364 | 37 (0.960) | 4 (0.110) | 3/270 | 5.4 | 11.1% | noncoding (58/266 nt) | REP184 (repetitive extragenic palindromic) element, contains 6 REP sequences | REP184 (repetitive extragenic palindromic) element, contains 6 REP sequences |
| ? | NC_000913 | = 2662474 | 29 (0.790) | noncoding (168/266 nt) | REP184 (repetitive extragenic palindromic) element, contains 6 REP sequences | REP184 (repetitive extragenic palindromic) element, contains 6 REP sequences | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTC‑‑ACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCA > NC_000913/2662333‑2662614 | cGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCGGTTC‑‑ACTGTAGGCCTGATAAGACGCATTACGCGTCGCa > 2:86/1‑143 (MQ=255) ttCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTC‑‑ACTGTAGGCCTGATAAGACGCCTTACGCGTCGCACCCGGCCACg > 2:205915/1‑143 (MQ=255) cTGATGAGCCGCGTTACGCGTCGCCTCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTC‑‑ACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGt < 1:562654/143‑1 (MQ=255) ggtgcgccgcggctCAGGCAACGGGCGTCGGGTGCGGCGTGAACGCCGTATCCGCCCTGGGGTTCTGTTC‑‑ACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATc < 1:109684/130‑1 (MQ=11) gcgTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTC‑‑ACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCCGCGTGCACGCCTTATCCGccc > 2:614771/1‑143 (MQ=255) gCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTC‑‑ACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGCATGCGGCGTGCACGCCTTATCCGACCTACgg > 2:394824/1‑143 (MQ=255) aTCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTC‑‑ACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGCACGGCGCGGGAACGCTTTATCTGAcgcccgata > 1:609911/1‑135 (MQ=11) cAGGCGACGGCTGTCGGGTGCGGCGTGAACGCCGTATCCGACCTACGGTTCTGTTC‑‑ACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCt < 2:672052/143‑1 (MQ=255) atgCAACGGTTGTCGGATGCGGCGTGAACGCCTTATCCGCCCTACGGTTCTGTTC‑‑ACTGTAGGCCTGATAAGACGCAGTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTg < 1:149363/141‑1 (MQ=255) gCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGCCCTACGGTTCTGTTC‑‑ACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGtt < 2:321397/143‑1 (MQ=255) tGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTC‑‑ACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCCGACGCCGCGTGTACCCCTTATCCGACCGACGGtccaaaccggacgag > 1:405753/1‑129 (MQ=14) ggtttGCGGCTTGTTCGCCTTTTCTTACCTACGGTTATGTCCCGTTTGTAGGCCTGATAAGTCGC‑TCA‑GCGTCGCGTCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTctggctcgttg < 1:18496/139‑11 (MQ=14) ggATCCGGCGTGAACGCCTTACCCGACCTACGGTTCTGTTC‑‑ACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCt < 2:48462/143‑1 (MQ=255) gcgTGAACGCCGTAGCCGAGCTACGGTTCTGTTC‑‑ACTGTAGGCCTGATAAGACGCATTACGCGTCGCAGCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGa < 1:369844/143‑1 (MQ=255) gTGAACGCCTTATCCGACCTACGGTTCTGTTC‑‑ACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGCTGCGGCGCGCGCGCCTTCTCCGCCCTCCCGCTCTCTCCACTCTTGGCCGCATAAGACg > 2:21697/1‑143 (MQ=14) gAACGCCTTATCCGACCTACGGTTCTGTTC‑‑ACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGCCCTGCTCAGACGcc > 2:564989/1‑142 (MQ=255) aCGCCTTACCCGTCCTACGGTTCTCTTC‑‑ACTGTAGTCCTGATAAGACGCATTTCGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCAtt < 1:369797/143‑1 (MQ=14) cTTATCCGACCTACGGTTCTGTTC‑‑ACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTCCGGTTCTGTCCCCTGTAGGCCTGATCAGACGCATCAcgc > 2:518589/1‑143 (MQ=14) cTTATCCGACCTACGGTTCTGTTC‑‑ACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGCCTGTTGTGTGCCGCGTGTACGCCTTATCCGACCCACGGTACTGTTCACTATAGGCCGGAGAAGAAGCATGAcac > 1:79983/1‑141 (MQ=14) acccGGCCTGCGGTTCTGTTC‑‑ACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTc < 1:640923/141‑1 (MQ=12) tCTGTTC‑‑ACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACgg < 2:136183/143‑1 (MQ=32) tGTTC‑‑TCTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACAGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCt < 1:540745/143‑1 (MQ=17) tGTTC‑‑ACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATCAGACGCATTACGCGTCTCAGCAGGCAACGGCt > 2:246822/1‑143 (MQ=12) cagtGTAGGCCTAATGAGACGCATTACGTGTCGCATTAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGTCCTAGGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTa < 1:57079/140‑1 (MQ=11) tgtgGGCCTGTGAGGACGCGTTACGGGTCGCGTCGGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTc < 1:40444/143‑1 (MQ=11) ggCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTGATCCGACCTACGGTTCTGTTCACTGTGGGCCTGATAAGACGCATTACGCGTCGCATCAGGCGACGGCTGTTaaacgcgc > 1:69643/1‑136 (MQ=11) tAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGCTGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGATAc > 2:70711/1‑143 (MQ=255) cATTCCGCGTCGCCTCCGGCAACCGCCGTCGGGTGCGGCGTGAACGCCTTATCCGACCTCCGGTTCTGTTCACTGTAGGCCTGATAAGACGCATCACGCGTCGTATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTAtt < 1:11875/143‑1 (MQ=17) gTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGACCTGATAAGACGCCATACGCGTCGCATCAGGCAACGGCGGTTATTCGGCCCTGTTACCGCTCTTctgcccct > 1:324482/1‑139 (MQ=14) gTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGAAGGCATGATAAGACGCATTACGCGACGCATCAGGCAACGGCTGTTGTACGGACTTGTGCCCTATATTctgctaat > 1:52448/1‑140 (MQ=11) tgCATCTGGCACCGGCTGTCGGATGCGGCGTGAACGCCTTATCCGCCCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCa < 1:275164/142‑1 (MQ=255) | CGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTC‑‑ACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTACCTTTATTCTGCTGCTCA > NC_000913/2662333‑2662614 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |