Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
MC JC	NC_000913	1,978,503	Δ776 bp	100%		insB1–insA	insB1, insA

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	1978503–1979269	1979278	10–776	58 [0]	[8] 66	insB1–insA	insB1, insA

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1978502	0 (0.000)	55 (0.620)	39/484	NT	100%	intergenic (‑305/+16)	flhD/insB1	flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
	?	NC_000913	1979279 =	0 (0.000)					intergenic (‑64/‑474)	insA/uspC	IS1 repressor TnpA/universal stress protein

ATGCGGTTTCACCGCACCCCGTGATGTCGCCGGGAAGCCCCGGTAAAAAATAATTAGCATTAGAATAGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACA‑TACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAGCTTTCCCTTCAGGCGGGATTCATACAGCGGCCAGCCATCCGTCATCCATAT  >  NC_000913/1978230‑1978733                                                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                        aTGCCGTTTCACCGCACCCCGTGATGTCGCCGGGAAGCCCCGGTAAAAAATAATTAGCATTAGAATAGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACA‑TACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGta                                                                                                                                                                                                                                       <  1:598042‑M1/275‑3 (MQ=255)  tGCGGTTTCACCGCACCCCGTGATGTCGCCGGGAAGCCCCGGTAAAAAATAATTAGCATTAGAATAGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTAACTACCAGAACA‑TACAACGGAGGGGGCCTGCGATTTTCAATCATGCGTTATGCAGATAACACAAACCACCAAATTACTTAACATCAATGtaa                                                                                                                                                                                                                                      >  1:474041‑M1/1‑272 (MQ=255)  tGCGGTTTCACCGCACCCCGTGATGTCGCCGGGAAGCCCCGGTAAAAAATAATTAGCATTAGAATAGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATAGGTCTTTACACTTATCTAAGATTTTTCCTAAATCCACGCACCTGTACTCGTCACTACACGCACA‑TCCAACGGAGGGGGGCCGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATACCTTAACTTAAATGttt                                                                                                                                                                                                                                      >  1:75567‑M1/1‑272 (MQ=255)        ttCACCGCACCCCGTGATGTCGCCGGGAAGCCCCCGGAAAAAATAATTAGCATTAGAATAGTTGCGATAAGCTGCAATAAGCATAACCACCTTGTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCGAAATCGACGAAACTGTACTCGTCACTACACGCCCA‑TACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtca                                                                                                                                                                                                                                <  1:573847‑M1/275‑10 (MQ=255)                    cGTGATGTCGCCGGGAAGCCCCGGTAAAAAATAATTAGCATTAGAATAGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTCCACTTATCTAAGATTTTTCCTAAATCGCCGCAACTGTACTCGTCACTACACGCACA‑TACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCCATTACTTAACATAAATGtataagtcatacttttgtttt                                                                                                                                                                                                                    >  1:266471‑M1/1‑254 (MQ=255)                    cGTGATGTCGCCGGGAAGCCCCGGTAAAAAATAATTAGCATTAGAATAGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACA‑TACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgtttt                                                                                                                                                                                                                    >  1:829462‑M1/1‑254 (MQ=255)                     gTGATGTCGCCGGGAAGCCCCGGAAAAAAATAATTAGCGTTAGAATAGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTTGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAAGCGACGCAACTGTACTCGTCACTACACGGACA‑TACAACGGAGGGAGGCTGCGATTTTAAATAATGCGTGATGCAGATCACACAAAACACTCAAGTACTTAACATAAATGtataagtcatacttttgtttt                                                                                                                                                                                                                    <  2:299546‑M1/274‑22 (MQ=255)                                  gAAGCCCCGGTAAAAAATAATTAGCATTAGAATAGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACA‑TACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaat                                                                                                                                                                                                      <  2:717376‑M1/275‑36 (MQ=255)                                  gAAGCCCCGGTAAAAAATAATTAGCATTAGAATAGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAAAATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACA‑TACAACGGAGGGGGGCGGCGATTTGCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaat                                                                                                                                                                                                      <  2:308526‑M1/275‑36 (MQ=255)                                  gAAGCCCCAGTAAAAAATAAGTAGCATTAGAATAGTGTCGAGAAGATGCAATAAGCAGAACCACCTTGTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACA‑TACAACGGAGGGTGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacgtttgttttgggtgtatttcaat                                                                                                                                                                                                      <  1:279159‑M1/275‑36 (MQ=255)                                       cccGGTAAAAAATAATTAGCATTAGAATAGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACA‑TACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgtttt                                                                                                                                                                                                                    >  1:715819‑M1/1‑235 (MQ=255)                                           gTAAAAAATAATTAGCATTAGAATAGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACA‑TACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggt                                                                                                                                                                                                                <  2:715820‑M1/256‑26 (MQ=255)                                                          cATTAGAATAGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACA‑TACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacg                                                                                                                                                                               <  1:867545‑M1/274‑59 (MQ=255)                                                                      tGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACA‑TACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaa                                                                                                                                                                  >  1:161432‑M1/1‑204 (MQ=255)                                                                       gCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACA‑TACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaa                                                                                                                                                                 >  1:299846‑M1/1‑203 (MQ=255)                                                                       gCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACA‑TACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaa                                                                                                                                                                 >  1:641664‑M1/1‑203 (MQ=255)                                                                          aTAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACA‑TACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatga                                                                                                                                                              >  2:493375‑M1/1‑200 (MQ=255)                                                                                         cAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGGTATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACA‑TACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgcgacgctagcaagcaaaaatgaaacaggaataatcg                                                                                                                                                <  2:481699‑M1/274‑90 (MQ=255)                                                                                          aGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATTGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACA‑TACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaa                                                                                                                                              <  2:654101‑M1/275‑92 (MQ=255)                                                                                               caccTTTTTGGTTTAATATGTCCCTACAAATAGAAATGTGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACA‑TACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatggg                                                                                                                                         <  2:269468‑M1/275‑97 (MQ=255)                                                                                                 ccTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACA‑TACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggat                                                                                                                                       >  2:812071‑M1/1‑177 (MQ=255)                                                                                                      ttGGTTTAATATGTCCTTACACATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACA‑TACAACGGAGGGGGGCTGCGATTTTCAATAATGCGAGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaagtgggatgtggc                                                                                                                                  >  2:646448‑M1/1‑172 (MQ=255)                                                                                                           ttAATATGTCCTTACAAATAGTAATGGGTATTTACAATTATCTAAGATTTTTCCTAAATCGACGCCACTGTACTCGTCACTACACGCACA‑TACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTTATGCAGATCACACAAAACACTCAAATACTTAACATAAATGtataagtcatacttgtgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataattgaaatgggatgttgcgca                                                                                                                               <  2:736470‑M1/273‑107 (MQ=255)                                                                                                                   tCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACA‑TACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaat                                                                                                                     >  1:558468‑M1/1‑159 (MQ=255)                                                                                                                        aCAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACA‑TACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatg                                                                                                                                                               >  1:45202‑M1/1‑154 (MQ=255)                                                                                                                           aaTAGAAATGTGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACA‑TACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcacc                                                                                                             <  2:829463‑M1/275‑125 (MQ=255)                                                                                                                            aTAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACA‑TACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaac                                                                                                                                                           <  2:45202‑M1/228‑79 (MQ=255)                                                                                                                             tAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACA‑TACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcaccgtcaaaataactcacc                                                                                                             >  1:177390‑M1/1‑149 (MQ=255)                                                                                                                              aGAAATGGGTCTTTACACTTATCTAAGATTATTCCTAAATCGACGCAACTGTACTCGTCACTCCACGCACA‑TAAAACGGAGGGGGGCTGCGATTTTCAATAATTCGTGATGCAGATCACACAAAACAATAAATTCCTTAACATAAAAGtataagtcatacttttgttttgggtgtatttcaatctgttaaaacgtttatcgctacgctagcaagaaaaaatgaaaacggaataatcgaaatgggatgtggtgcacagtaaaactacatcacaaga                                                                                                          >  1:818616‑M1/1‑148 (MQ=255)                                                                                                                                aaaTGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACA‑TACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaat                                                                                                                     >  2:212966‑M1/1‑146 (MQ=255)                                                                                                                                  attggtctTTTACCTTATCTAACACTTTTCCTAAATCGACGCAACTTGAACCGTCACTACACGCACA‑TACAACGGAGGGGGGCTGCTATTTTCAATAATGCGTGATGCAGATAACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaatagtttttctctacgctagcaagcaaaaatgaaacaggaataatcgaaaggggatgttgcgcacaggcaaaataactcaccgtaaat                                                                                                       <  2:16563‑M1/271‑131 (MQ=255)                                                                                                                                    gggTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACA‑TACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataact                                                                                                                 <  1:212966‑M1/262‑121 (MQ=255)                                                                                                                                       tcattacaCATATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCTTCACTACACG‑ACACTACAACGGGGGGGGGCTGCGATTTTCAATAATGCGTGATTCAGATCACCCAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcat                                                                                                 <  2:22725‑M1/272‑137 (MQ=255)                                                                                                                                       tCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACA‑TACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcat                                                                                                 <  2:161432‑M1/275‑137 (MQ=255)                                                                                                                                       tCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACGGTACTCGTCACTACACGCACA‑AACAACGGAGGGGGGCGGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttgtgggtgtatttcaatctgttaaaaagttgttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcat                                                                                                 <  2:30604‑M1/275‑137 (MQ=255)                                                                                                                                       tCTTTACACTTATCTAAGATTTTTCCGAAATCGGCGCAAATGGACTCGGCACTACCCGCACA‑TACAACGGAGGGAGGCTGAGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcat                                                                                                 <  2:75567‑M1/275‑137 (MQ=255)                                                                                                                                          ttACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACA‑TACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaa                                                                                                                                             >  1:595956‑M1/1‑136 (MQ=255)                                                                                                                                              acTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACA‑TACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatggg                                                                                                                                         <  2:595957‑M1/228‑97 (MQ=255)                                                                                                                                               cTTATCTAAGATTTGTCCTAAAGCGAAGCAACTGTACTCGTCACTACACGCACA‑TACAACGGATGGGGGCTGTGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgcta                                                                                           <  2:319721‑M1/273‑143 (MQ=255)                                                                                                                                                 tATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACA‑TACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaggcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaa                                                                                       >  1:448630‑M1/1‑129 (MQ=255)                                                                                                                                                 tATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACA‑TACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaa                                                                                       >  2:791073‑M1/1‑129 (MQ=255)                                                                                                                                                 tATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACA‑TACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttg                                                                                                                                                                                                                        >  1:866560‑M1/1‑129 (MQ=255)                                                                                                                                                     tAAGAGTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACA‑TACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgtttt                                                                                                                                                                                                                    <  2:866561‑M1/146‑22 (MQ=255)                                                                                                                                                           ttttCCTAAATCGACGCAACTGTACTCGTCACTACACGCACA‑TGCAACGTAAGGTGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTAAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggattttgcgcacagtcaaaataactcaccgtaaataatcatctgctatcaataatcacttt                                                                             <  2:359078‑M1/275‑157 (MQ=255)                                                                                                                                                             ttCCTAAATCGACGCAACTGTACTCGTCACTACACGCACA‑TACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtatacgtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaatacctcaccgtaaataatcatctgctataattaaccactttca                                                                           >  1:4854‑M1/1‑117 (MQ=255)                                                                                                                                                             ttCCTAAATCGACCGAACTGTATTCGTAACTAAACGCACA‑TACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaataatcactttca                                                                           <  1:646447‑M1/275‑159 (MQ=255)                                                                                                                                                               ccTAAATCGACGCAACTGTACTCGTCACTACACGCACA‑TACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaataatcactttcatg                                                                         <  2:641665‑M1/275‑161 (MQ=255)                                                                                                                                                                         cGCAACTGTACTCGTCACTAAACGCACA‑TACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaataatcactttcatgcaataccaga                                                               <  2:643445‑M1/275‑171 (MQ=255)                                                                                                                                                                                             cacGCACA‑TACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaataatcactttcatgcaataccagataagctatttttaaacagac                                           >  1:359989‑M1/1‑85 (MQ=255)                                                                                                                                                                                             cacGCACA‑TACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaata                                                                                                                                                    >  1:651811‑M1/1‑85 (MQ=255)                                                                                                                                                                                                 caca‑TACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaataatcactttcatgcaataccagataagctatttttaaacagacact                                        <  2:181087‑M1/274‑194 (MQ=255)                                                                                                                                                                                                 caca‑TACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcg                                                                                                                                                <  2:651812‑M1/170‑90 (MQ=255)                                                                                                                                                                                                           cGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaataatcactttcatgcaataccagataagctatttttaaacagacacttaccgcacaa                              <  1:812070‑M1/275‑204 (MQ=255)                                                                                                                                                                                                              aGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaataatcactttcatgcaataccagataagctatttttaaacagacacttaccgcacaacaa                           <  2:177390‑M1/275‑207 (MQ=255)                                                                                                                                                                                                               ggggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataa                                                                                                     >  1:546419‑M1/1‑68 (MQ=255)                                                                                                                                                                                                                   ggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcat                                                                                                 <  2:546420‑M1/200‑137 (MQ=255)                                                                                                                                                                                                                      tGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaataatcactttcatgcaataccagataagctatttttaaacagacacttaccgcacaacaaactaagga                   <  2:314234‑M1/275‑215 (MQ=255)                                                                                                                                                                                                                                       cGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaagatgaaacaggcataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaataatcactttcatgcaataccagataagctatttttaaacagacacttaccgcacaacaaactaaggaaggtgcgaacaagtccc  <  2:266471‑M1/275‑232 (MQ=255)                                                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                        ATGCGGTTTCACCGCACCCCGTGATGTCGCCGGGAAGCCCCGGTAAAAAATAATTAGCATTAGAATAGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACA‑TACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAGCTTTCCCTTCAGGCGGGATTCATACAGCGGCCAGCCATCCGTCATCCATAT  >  NC_000913/1978230‑1978733

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑