New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 455375421 (0.620)3 (0.090) 3/468 NT 8.5% coding (853/1461 nt) uxuB D‑mannonate oxidoreductase, NAD‑dependent
?NC_000913 = 4554836 45 (1.410)coding (260/774 nt) uxuR fructuronate‑inducible hexuronate regulon transcriptional repressor, autorepressor

GCGAAGGTCGCGGTACTGGGGCTGGCTCAGGCGCGTGACCCGCAGCTGGCGGCATGGATTGAAGAAAATGTCACCTTCCCGTGCACCATGGTTGACCGCATCGTTCCGGCGGCGACGCCAGAAACCTTACAGGAAATTGCTGACCAGCTGGGTGTTTACGACCCGTGCGCCATTGCCTGCGAACCGTTCCGTCAGTGGGTGATTGAAGATAACTTCGTTAATGGTCGCCCGGATTGGGATAAAGTGGGCGCACAGTTCGTTGCAGACGTTGTGCCGTTCGAAATGATGAAGCTGCGTATGCTGAACGGCAGCCACTCTTTTCTGGCGTACCTCGGTTACCTCGGCGGCTATGAAACCATTGCCGACACCGTGACTAACCCGGCTTATCGCAAAGCGGCCTTTGCCCTGATGATGCAGGAACAAGCGCCAACGCTGTCGATGCCGGAAGGTACAGACCTGAACGCCTATGCGACGCTGCTGATCGAGCGTTTCAGCAACCCGTCTCTGCGTCACCGTACCTGGCAGATTGCGATGGACG  >  NC_000913/4553484‑4554021
                                                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                                           
gCGAAGGTCGCGGTACTGGGGCTGGCTCAGGCGCGTGACCCGCAGCTGGCGGCATGGATTGAAGAAAATGTCACCTTCCCGTGCACCATGGTTGACCGCATCGTTCCGGCGGCGACGCCAGAAACCTTACAGGAAATTGCTGACCAGCTGGGTGTTTACGACCCGTGCGCCATTGCCTGCGAACCGTTCCGTCAGTGGGTGATTGAAGATAACTTCGTTAATGGTCGCCCGGATTGGGATAAAGTGGGCGCACAGTTCGTTGCAGACGTTGTGCCGTTCGAAatgatg                                                                                                                                                                                                                                                            <  2:209542/288‑1 (MQ=255)
                          tCAGGGGCGTGACCCGCAGCTGGCGGAATGGATTGAAGAAAATGTCACCTTCCCGTGCACCATGGTTGACCGCATCGTTCCGGCGGCGACGCCAGAAACCTTACAGGAAATTGCTGACCAGCTGGGTGTTTACGACCCGTGCGCCATTGCCTGCGAACCGTTCCGTCAGTGGGTGATTGAAGATAACTTCGTTAATGGTCGCCCGGATTGGGATAAAGTGGGCGCACAGTTCGTTGCAGACGTTGTGCCGTTCGAAATGATGAAGCTGCGTATGCTGAACGGCAGCCa                                                                                                                                                                                                                                  <  2:179909/288‑1 (MQ=255)
                                           aGCTGGCGGCATGGATTGAAGAAAATGTCACCTTCCCGTGCACCATGGTTGACCGCATCGTTCCGGCGGCGACGCCAGAAACCTTACAGGAAATTGCTGACCAGCTGGGTGTTTACGACCCGTGCGCCATTGCCTGCGAACCGTTCCGTCAGTGGGTGATTGAAGATAACTTCGTTAATGGTCGCCCGGATTGGGATAAAGTGGGCGCACAGTTCGTTGCAGACGTTGTGCCGTTCGAAATGATGAAGCTGCGTATGCTGAACGGCAGCCACTCTTTTCTGGCGTAcc                                                                                                                                                                                                                 <  2:87452/288‑1 (MQ=255)
                                                                                    aCCATGGTTGACCGCATCGTTCCGGCGGCGACGCCAGAAACCTTACAGGAAATTGCTGACCAGCTGGGTGTTTACGACCCGTGCGCCATTGCCTGCGAACCGTTCCGTCAGTGGGTGATTGAAGATAACTTCGTTAATGGTCGCCCGGATTGGGATAAAGTTGGCGCACAGTTCGTTGCAGACGTTGgcatccggactgtctgtgttctggctgcctgagttatcaagaacatagataccggcaccccggcgtacttccaccagccctttgatctccagcatgatcagc                                                                                                                                                                       >  1:70132‑M1/1‑187 (MQ=255)
                                                                                              aCCGCATCGTTCCGGCGGCGACGCCAGAAACCTTACAGGAAATTGCTGACCAGCTGGGTGTTTACGACCCGTGCGCCATTGCCTGCGAACCGTTCCGTCAGTGGGTGATTGAAGATAACTTCGTTAATGGTCGCCCGGATTGGGATAAAGTGGGCGCACAGTTCGTTGCAGACGTTGTGCCGTTCGAAATGATGAAGCTGCGTATGCTGAACGGCAGCCACTCTTTTCTGGCGTACCTCGGTTACCTCGGCGGCTATGAAACCATTGCCGACACCGTGACTAACCCg                                                                                                                                                               >  1:241143/1‑287 (MQ=255)
                                                                                                                                       aTTGCTGACCAGCTGGGTGTTTACGACCCGTGCGCCATTGCCTGCGAACCGTTCCGTCAGTGGGTGATTGAAGATAACTTCGTTAATGGTCGCCCGGATTGGGATAAAGTGGGCGCACAGTTCGTTGCAGACGTTGTGCCGTTCGAAATGATGAAGCTGCGTATGCTGAACGGCAGCCACTCTTTTCTGGCGTACCTCGGTTACCTCGGCGGCTATGAAACCATTGCCGACACCGTGACTAACCCGGCTTATCGCAAAGCGGCCTTTGCCCTGATGATGCAGGAACaa                                                                                                                     >  2:73596/1‑288 (MQ=255)
                                                                                                                                                cAGCTGGGTGTTTACGACCCGTGCGCCATTGCCTGCGAACCGTTCCGTCAGTGGGTGATTGAAGATAACTTCGTTAATGGTCGCCCGGATTGGGATAAAGTGGGCGCACAGTTCGTTGCAGACGTTGgcatccggactgtctgtgttctggctgcctgagttatcaagaacatagataccggcaccccggcgtacttccaccagccctttgatctccagcatgatcagcgcttcacgtaccaccgtccgcgtgacatcaagcatttctgcaatttcacgctccggcggc                                                                                                           <  2:70132‑M1/289‑163 (MQ=255)
                                                                                                                                                             aCGACCCGTGCGCCATTGCCTGCGAACCGTTCCGTCAGTGGGTGATTGAAGATAACTTCGTTAATGGTCGCCCGGATTGGGATAAAGTGGGCGCACAGTTCGTTGCAGACGTTGTGCCGTTCGAAATGATGAAGCTGCGTATGCTGAACGGCAGCCACTCTTTTCTGGCGTACCTCGGTTACCTCGGCGGCTATGAAACCATTGCCGACACCGTGACTAACCCGGCTTATCGCAAAGCGGCCTTTGCCCTGATGATGCAGGAACAAGCGCCAACGCTGTCGATGCCGGa                                                                                              <  2:241143/289‑1 (MQ=255)
                                                                                                                                                             aCGACCCGTGCGCCATTGCCTGCGAACCGTTCCGTCAGTGGGTGATTGAAGATAACTTCGTTAATGGTCGCCCGGATTGGGATAAAGTGGGCGCACAGTTCGTTGCAGACGTTGTGCCGTTCGAAATGATGAAGCTGCGTATGCTGAACGGCAGCCACTCTTTTCTGGCGTACCTCGGTTACCTCGGCGGCTATGAAACCATTGCCGACACCGTGACTAACCCGGCTTATCGCAAAGCGGCCTTTGCCCTGATGATGCAGGAACAAGCGCCAACGCTGTCGATGCCGGa                                                                                              <  1:73596/289‑1 (MQ=255)
                                                                                                                                                             aCGACCCGTGCGCAATTGCCGGGGAACCGTTCCGTCAGTGGGTGATTGAAGATAACTTCGTTAATGGTCGCCCGGATTGGGATAAAGTGGGCGCACAGTTCGTTGCAGACGTTGTGCCGTTCGAAATGATGAAGCTGCGTATGCTGAACGGCAGCCACTCTTTTCTGGCGTACCTCGGTTACCTCGGCGGCTATGAAACCATTGCCGACACCGTGACTAACCCGGCTTATCGCAAAGCGGCCTTTGCCCTGATGATGCAGGAACAAGCGCCAACGCTGTCGATGCCGGa                                                                                              <  1:108879/289‑1 (MQ=255)
                                                                                                                                                                aCCCGTGCGCCATTGCCTGCGAACCGTTCCGTCAGTGGGTGATTGAAGATAACTTCGTTAATGGTCGCCCGGATTGGGATAAAGTGGGCGCACAGTTCGTTGCAGACGTTGgcatccggactgtctgtgttctggctgcctgagttatcaagaacatagataccggcaccccggcgtacttccaccagccctttgatctccagcatgatcagcgcttcacgtaccaccgtccgcgtgacatcaagcatttctgcactttcacgcttcgccggcagccgttccccaggat                                                                                           >  2:180144‑M1/1‑111 (MQ=255)
                                                                                                                                                                    gTGCGCCATTGCCTGCGAACCGTTCCGTCAGTGGGTGATTGAAGATAACTTCGTTAATGGTCGCCCGGATTGGGATAAAGTGGGCGCACAGTTCGTTGCAGACGTTGTGCCGTTCGAAATGATGAAGCTGCGTATGCTGAACGGCAGCCACTCTTTTCTGGCGTACCTCGGTTACCTCGGCGGCTATGAAACCATTGCCGACACCGTGACTAACCCGGCTTATCGCAAAGCGGCCTTTGCCCTGATGATGCAGGAACAAGCGCCAACGCTGTCGATGCCGGAAGGTACa                                                                                       >  1:17471/1‑289 (MQ=255)
                                                                                                                                                                     tGCGCCATTGCCTGCGAACCGTTCCGTCAGTGGGTGATTGAAGATAACTTCGTTAATGGTCGCCCGGATTGGGATAAAGTGGGCGCACAGTTCGTTGCAGACGTTGTGCCGTTCGAAATGATGAAGCTGCGTATGCTGAACGGCAGCCACTCTTTTCTGGCGTACCTCGGTTACCTCGGCGGCTATGAAACCATTGCCGACACCGTGACTAACCCGGCTTATCGCAAAGCGGCCTTTGCCCTGATGATGCAGGAACAAGCGCCAACGCTGTCGATGCCGGAAGGTACAg                                                                                      >  1:81312/1‑289 (MQ=255)
                                                                                                                                                                     tGCGCCATTGCCTGCGAACCGTTACGTCAGTGGGAGATTGAAGATAACTTCGTTAATGGTCGCCCGGATTGGGATAAAGTGGGCGCACAGTTCGTTGCAGACGTTGTGCCGTTCGAAATGATGAAGCTGCGTATGCTGAACGGCAGCCACTCTTTTATGGCGTACCTCGGTTACCTCGGCGGCTATGAAACCATTGCCGACACCGTGACTAACACGGCTTATCGCACAGCGGCCTTTGCCCTGATGACGCAGGAACAAGCGCCAACGCTGTCGATGCCGCACGGTaaaa                                                                                      >  1:283744/1‑286 (MQ=255)
                                                                                                                                                                          cATTGCCTGCGAACCGTTCCGTCAGTGGGTGATTGAAGATAACTTCGTTAATGGTCGCCCGGATTGGGATAAAGTGGGCGCACAGTTCGTTGCAGACGTTGTGCCGTTCGAAATGATGAAGCTGCGTATGCTGAACGGCAGCCACTCTTTTCTGGCGTACCTCGGTTACCTCGGCGGCTATGAAACCATTGCCGACACCGTGACTAACCCGGCTTATCGCAAAGCGGCCTTTGCCCTGATGATGCAGGAACAAGCGCCAACGCTGTCGATGCCGGAAGGTACAGACCTg                                                                                 <  1:241275/289‑1 (MQ=255)
                                                                                                                                                                                 tGCGAACCGTTCCGTCAGTGGGTGATTGAAGATAACTTCGTTAATGGTCGCCCGGATTGGGATAAAGTGGGCGCACAGTTCGTTGCAGACGTTGTGCCGTTCGAAATGATGAAGCTGCGTATGCTGAACGGCAGCCACTCTTTTCTGGCGTACCTCGGTTACCTCGGCGGCTATGAAACCATTGCCGACACCGTGACTAACCCGGCTTATCGCAAAGCGGCCTTTGCCCTGATGATGCAGGAACAAGCGCCAACGCTGTCGATGCCGGa                                                                                              <  1:27454/269‑1 (MQ=255)
                                                                                                                                                                                 tGCGAACCGTTCCGTCAGTGGGTGATTGAAGATAACTTCGTTAATGGTCGCCCGGATTGGGATAAAGTGGGCGCACAGTTCGTTGCAGACGTTGTGCCGTTCGAAATGATGAAGCTGCGTATGCTGAACGGCAGCCACTCTTTTCTGGCGTACCTCGGTTACCTCGGCGGCTATGAAACCATTGCCGACACCGTGACTAACCCGGCTTATCGCAAAGCGGCCTTTGCCCTGATGATGCAGGAACAAGCGCCAACGCTGTCGATGCCGGa                                                                                              >  2:27454/1‑269 (MQ=255)
                                                                                                                                                                                                   tGGGTGATTGAAGATAACTTCGTTAATGGTCGCCCGGATTGGGATAAAGTGGGCGCACAGTTCGTTGCAGACGTTGTGCCGTTCGAAATGATGAAGCTGCGTATGCTGAACGGCAGCCACTCTTTTCTGGCGTACCTCGGTTACCTCGGCGGCTATGAAACCATTGCCGACACCGTGACTAACCCGGCTTATCGCAAAGCGGCCTTTGCCCTGATGATGCAGGAACAAGCGCCAACGCTGTCGATGCCGGAAGGTACAGACCTGAACGCCTATGCGACGCTGCTGATc                                                         <  2:17471/288‑1 (MQ=255)
                                                                                                                                                                                                               gATAACTTCGTTAATGGTCGCCCGGATTGGGATAAAGTGGGCGCACAGTTCGTTGCAGACGTTGTGCCGTTCGAAATGATGAAGCTGCGTATGCTGAACGGCAGCCACTCTTTTCTGGCGTTCCTCGGTTACCTCGGCGGCTATGAAACCATTGCCGACACCGTGACTAACCCGGCTTATCGCAAAGCGGCCTTTGCCCTGATGATGCAGGAACAAGCGCCAACGCTGTCGATGCCGGAAGGTACAGACCTGAACGCCTATGCGACGCTGCTGATCGAGCGTTTCAGCa                                            >  2:189363/1‑289 (MQ=255)
                                                                                                                                                                                                                               gTCGCCCGGATTGGGATAAAGTGGGCGCACAGTTCGTTGCAGACGTTGTGCCGTTCGAAATGATGAAGCTGCGTATGCTGAACGGCAGCCACTCTTTTCTGGCGTACCTCGGTTACCTCGGCGGCTATGAAACCATTGCCGACACCGTGACTAACCCGGCTTATCGCAAAGc                                                                                                                                                 <  2:258946/172‑1 (MQ=255)
                                                                                                                                                                                                                               gTCGCCCGGATTGGGATAAAGTGGGCGCACAGTTCGTTGCAGACGTTGTGCCGTTCGAAATGATGAAGCTGCGTATGCTGAACGGCAGCCACTCTTTTCTGGCGTACCTCGGTTACCTCGGCGGCTATGAAACCATTGCCGACACCGTGACTAACCCGGCTTATCGCAAAGc                                                                                                                                                 >  1:258946/1‑172 (MQ=255)
                                                                                                                                                                                                                                                  aGTGGGCGCACAGTTCGTTGCAGACGTTGTGCCGTTCGAAATGATGAAGCTGCGTATGCTGAACGGCAGCCACTCTTTTCTGGCGTACCTCGGTTACCTCGGCGGCTATGAAACCATTGcc                                                                                                                                                                                 <  1:221761/121‑1 (MQ=255)
                                                                                                                                                                                                                                                  aGTGGGCGCACAGTTCGTTGCAGACGTTGTGCCGTTCGAAATGATGAAGCTGCGTATGCTGAACGGCAGCCACTCTTTTCTGGCGTACCTCGGTTACCTCGGCGGCTATGAAACCATTGcc                                                                                                                                                                                 >  2:221761/1‑121 (MQ=255)
                                                                                                                                                                                                                                                         gcACAGTTCGTTGCAGACGTTGTGCCGTTCGAAATGATGAAGCTGCGTATGCTGAACGGCAGCCACTCTTTTCTGGCGTACCTCGGTTACCTCGGCGGCTATGAAACCATTGCCGACACCGTGACTAACCCGGCTTATCGCAAAGCGGCCTTTGCCCTGATGATGCAGGAACAAGCGCCAACGCTGTCGATGCCGGAAGGTACAGACCTGAACGCCTATGCGACGCTGCTGATCGAGCGTTTCAGCAACCCGTCTCTGCGTCACCGTACCTGGCAGATTGCGATGGACg  <  2:81312/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                  gTTGCAGACGTTGgcatccggactgtctgtgttctggctgcctgagttatcaagaacatagataccggcaccccggcgtacttccaccagccctttgatctccagcatgatcagcgcttcacgtaccaccgtccgcgtgacatcaagcatttctgcaatttcacgctccggcggcagccgttcgccaggattgtacggcgtctttatgatcagatcgcggatcatcgccccgacttcctggtaaggtctttgcgcagaggtggc                  <  2:90975‑M1/264‑252 (MQ=255)
                                                                                                                                                                                                                                                                  gTTGCAGACGTTGgcatccggactgtctgtgttctggctgcctgagttatcaagaacatagataccggcaccccggcgtacttccaccagccctttgatctccagcatgatcagcgcttcacgtaccaccgtccgcgtgacatcaagcatttctgcaatttcacgctccggcggcagccgttcgccaggattgtacggcgtctttatgatcagatcgcggatcatcgccccgacttcctggtaaggtctttgcgcagaggtggc                  >  1:90975‑M1/1‑13 (MQ=255)
                                                                                                                                                                                                                                                                   ttGCAGACGTTGgcatccggactgtctgtgttctggctgcctgagttatcaagaacatagataccggcaccccggcgtacttccaccagccctttgatctccagcatgatcagcgcttcacgtaccaccgtccgcgtgacatcaagcatttctgcaatttcacgctccggcggcagccgttcgccaggattgtacggcgtctttatgatcagatcgcggatcatcgccccgacttc                                             >  2:5823‑M1/1‑12 (MQ=255)
                                                                                                                                                                                                                                                                   ttGCAGACGTTGgcatccggactgtctgtgttctggctgcctgagttatcaagaacatagataccggcaccccggcgtacttccaccagccctttgatctccagcatgatcagcgcttcacgtaccaccgtccgcgtgacatcaagcatttctgcaatttcacgctccggcggcagccgttcgccaggattgtacggcgtctttatgatcagatcgcggatcatcgccccgacttc                                             <  1:5823‑M1/236‑225 (MQ=255)
                                                                                                                                                                                                                                                                            ttGgcatccggactgtctgtgttctggctgcctgagttatcaagaacatagataccggcaccccggcgtacttccaccagccctttgatctccagcatgatcagcgcttcacgtaccaccgtccgcgtgacatcaagcatttctgcaatttcacgctccggcggcagccgttcgccaggattgtacggcgtctttatgatcagatcgcggatcatcgccccga                                                 >  2:314001‑M1/1‑3 (MQ=255)
                                                                                                                                                                                                                                                                            ttGgcatccggactgtctgtgttctggctgcctgagttatcaagaacatagataccggcaccccggcgtacttccaccagccctttgatctccagcatgatcagcgcttcacgtaccaccgtccgcgtgacatcaagcatttctgcaatttcacgctccggcggcagccgttcgccaggattgtacggcgtctttatgatcagatcgcggatcatcgccccga                                                 <  1:314001‑M1/223‑221 (MQ=255)
                                                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                                           
GCGAAGGTCGCGGTACTGGGGCTGGCTCAGGCGCGTGACCCGCAGCTGGCGGCATGGATTGAAGAAAATGTCACCTTCCCGTGCACCATGGTTGACCGCATCGTTCCGGCGGCGACGCCAGAAACCTTACAGGAAATTGCTGACCAGCTGGGTGTTTACGACCCGTGCGCCATTGCCTGCGAACCGTTCCGTCAGTGGGTGATTGAAGATAACTTCGTTAATGGTCGCCCGGATTGGGATAAAGTGGGCGCACAGTTCGTTGCAGACGTTGTGCCGTTCGAAATGATGAAGCTGCGTATGCTGAACGGCAGCCACTCTTTTCTGGCGTACCTCGGTTACCTCGGCGGCTATGAAACCATTGCCGACACCGTGACTAACCCGGCTTATCGCAAAGCGGCCTTTGCCCTGATGATGCAGGAACAAGCGCCAACGCTGTCGATGCCGGAAGGTACAGACCTGAACGCCTATGCGACGCTGCTGATCGAGCGTTTCAGCAACCCGTCTCTGCGTCACCGTACCTGGCAGATTGCGATGGACG  >  NC_000913/4553484‑4554021

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.