New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4553754	21 (0.620)	3 (0.090)	3/468	NT	8.5%	coding (853/1461 nt)	uxuB	D‑mannonate oxidoreductase, NAD‑dependent
	?	NC_000913	= 4554836	45 (1.410)					coding (260/774 nt)	uxuR	fructuronate‑inducible hexuronate regulon transcriptional repressor, autorepressor

GCGAAGGTCGCGGTACTGGGGCTGGCTCAGGCGCGTGACCCGCAGCTGGCGGCATGGATTGAAGAAAATGTCACCTTCCCGTGCACCATGGTTGACCGCATCGTTCCGGCGGCGACGCCAGAAACCTTACAGGAAATTGCTGACCAGCTGGGTGTTTACGACCCGTGCGCCATTGCCTGCGAACCGTTCCGTCAGTGGGTGATTGAAGATAACTTCGTTAATGGTCGCCCGGATTGGGATAAAGTGGGCGCACAGTTCGTTGCAGACGTTGTGCCGTTCGAAATGATGAAGCTGCGTATGCTGAACGGCAGCCACTCTTTTCTGGCGTACCTCGGTTACCTCGGCGGCTATGAAACCATTGCCGACACCGTGACTAACCCGGCTTATCGCAAAGCGGCCTTTGCCCTGATGATGCAGGAACAAGCGCCAACGCTGTCGATGCCGGAAGGTACAGACCTGAACGCCTATGCGACGCTGCTGATCGAGCGTTTCAGCAACCCGTCTCTGCGTCACCGTACCTGGCAGATTGCGATGGACG  >  NC_000913/4553484‑4554021                                                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                                                            gCGAAGGTCGCGGTACTGGGGCTGGCTCAGGCGCGTGACCCGCAGCTGGCGGCATGGATTGAAGAAAATGTCACCTTCCCGTGCACCATGGTTGACCGCATCGTTCCGGCGGCGACGCCAGAAACCTTACAGGAAATTGCTGACCAGCTGGGTGTTTACGACCCGTGCGCCATTGCCTGCGAACCGTTCCGTCAGTGGGTGATTGAAGATAACTTCGTTAATGGTCGCCCGGATTGGGATAAAGTGGGCGCACAGTTCGTTGCAGACGTTGTGCCGTTCGAAatgatg                                                                                                                                                                                                                                                            <  2:209542/288‑1 (MQ=255)                           tCAGGGGCGTGACCCGCAGCTGGCGGAATGGATTGAAGAAAATGTCACCTTCCCGTGCACCATGGTTGACCGCATCGTTCCGGCGGCGACGCCAGAAACCTTACAGGAAATTGCTGACCAGCTGGGTGTTTACGACCCGTGCGCCATTGCCTGCGAACCGTTCCGTCAGTGGGTGATTGAAGATAACTTCGTTAATGGTCGCCCGGATTGGGATAAAGTGGGCGCACAGTTCGTTGCAGACGTTGTGCCGTTCGAAATGATGAAGCTGCGTATGCTGAACGGCAGCCa                                                                                                                                                                                                                                  <  2:179909/288‑1 (MQ=255)                                            aGCTGGCGGCATGGATTGAAGAAAATGTCACCTTCCCGTGCACCATGGTTGACCGCATCGTTCCGGCGGCGACGCCAGAAACCTTACAGGAAATTGCTGACCAGCTGGGTGTTTACGACCCGTGCGCCATTGCCTGCGAACCGTTCCGTCAGTGGGTGATTGAAGATAACTTCGTTAATGGTCGCCCGGATTGGGATAAAGTGGGCGCACAGTTCGTTGCAGACGTTGTGCCGTTCGAAATGATGAAGCTGCGTATGCTGAACGGCAGCCACTCTTTTCTGGCGTAcc                                                                                                                                                                                                                 <  2:87452/288‑1 (MQ=255)                                                                                     aCCATGGTTGACCGCATCGTTCCGGCGGCGACGCCAGAAACCTTACAGGAAATTGCTGACCAGCTGGGTGTTTACGACCCGTGCGCCATTGCCTGCGAACCGTTCCGTCAGTGGGTGATTGAAGATAACTTCGTTAATGGTCGCCCGGATTGGGATAAAGTTGGCGCACAGTTCGTTGCAGACGTTGgcatccggactgtctgtgttctggctgcctgagttatcaagaacatagataccggcaccccggcgtacttccaccagccctttgatctccagcatgatcagc                                                                                                                                                                       >  1:70132‑M1/1‑187 (MQ=255)                                                                                               aCCGCATCGTTCCGGCGGCGACGCCAGAAACCTTACAGGAAATTGCTGACCAGCTGGGTGTTTACGACCCGTGCGCCATTGCCTGCGAACCGTTCCGTCAGTGGGTGATTGAAGATAACTTCGTTAATGGTCGCCCGGATTGGGATAAAGTGGGCGCACAGTTCGTTGCAGACGTTGTGCCGTTCGAAATGATGAAGCTGCGTATGCTGAACGGCAGCCACTCTTTTCTGGCGTACCTCGGTTACCTCGGCGGCTATGAAACCATTGCCGACACCGTGACTAACCCg                                                                                                                                                               >  1:241143/1‑287 (MQ=255)                                                                                                                                        aTTGCTGACCAGCTGGGTGTTTACGACCCGTGCGCCATTGCCTGCGAACCGTTCCGTCAGTGGGTGATTGAAGATAACTTCGTTAATGGTCGCCCGGATTGGGATAAAGTGGGCGCACAGTTCGTTGCAGACGTTGTGCCGTTCGAAATGATGAAGCTGCGTATGCTGAACGGCAGCCACTCTTTTCTGGCGTACCTCGGTTACCTCGGCGGCTATGAAACCATTGCCGACACCGTGACTAACCCGGCTTATCGCAAAGCGGCCTTTGCCCTGATGATGCAGGAACaa                                                                                                                     >  2:73596/1‑288 (MQ=255)                                                                                                                                                 cAGCTGGGTGTTTACGACCCGTGCGCCATTGCCTGCGAACCGTTCCGTCAGTGGGTGATTGAAGATAACTTCGTTAATGGTCGCCCGGATTGGGATAAAGTGGGCGCACAGTTCGTTGCAGACGTTGgcatccggactgtctgtgttctggctgcctgagttatcaagaacatagataccggcaccccggcgtacttccaccagccctttgatctccagcatgatcagcgcttcacgtaccaccgtccgcgtgacatcaagcatttctgcaatttcacgctccggcggc                                                                                                           <  2:70132‑M1/289‑163 (MQ=255)                                                                                                                                                              aCGACCCGTGCGCCATTGCCTGCGAACCGTTCCGTCAGTGGGTGATTGAAGATAACTTCGTTAATGGTCGCCCGGATTGGGATAAAGTGGGCGCACAGTTCGTTGCAGACGTTGTGCCGTTCGAAATGATGAAGCTGCGTATGCTGAACGGCAGCCACTCTTTTCTGGCGTACCTCGGTTACCTCGGCGGCTATGAAACCATTGCCGACACCGTGACTAACCCGGCTTATCGCAAAGCGGCCTTTGCCCTGATGATGCAGGAACAAGCGCCAACGCTGTCGATGCCGGa                                                                                              <  2:241143/289‑1 (MQ=255)                                                                                                                                                              aCGACCCGTGCGCCATTGCCTGCGAACCGTTCCGTCAGTGGGTGATTGAAGATAACTTCGTTAATGGTCGCCCGGATTGGGATAAAGTGGGCGCACAGTTCGTTGCAGACGTTGTGCCGTTCGAAATGATGAAGCTGCGTATGCTGAACGGCAGCCACTCTTTTCTGGCGTACCTCGGTTACCTCGGCGGCTATGAAACCATTGCCGACACCGTGACTAACCCGGCTTATCGCAAAGCGGCCTTTGCCCTGATGATGCAGGAACAAGCGCCAACGCTGTCGATGCCGGa                                                                                              <  1:73596/289‑1 (MQ=255)                                                                                                                                                              aCGACCCGTGCGCAATTGCCGGGGAACCGTTCCGTCAGTGGGTGATTGAAGATAACTTCGTTAATGGTCGCCCGGATTGGGATAAAGTGGGCGCACAGTTCGTTGCAGACGTTGTGCCGTTCGAAATGATGAAGCTGCGTATGCTGAACGGCAGCCACTCTTTTCTGGCGTACCTCGGTTACCTCGGCGGCTATGAAACCATTGCCGACACCGTGACTAACCCGGCTTATCGCAAAGCGGCCTTTGCCCTGATGATGCAGGAACAAGCGCCAACGCTGTCGATGCCGGa                                                                                              <  1:108879/289‑1 (MQ=255)                                                                                                                                                                 aCCCGTGCGCCATTGCCTGCGAACCGTTCCGTCAGTGGGTGATTGAAGATAACTTCGTTAATGGTCGCCCGGATTGGGATAAAGTGGGCGCACAGTTCGTTGCAGACGTTGgcatccggactgtctgtgttctggctgcctgagttatcaagaacatagataccggcaccccggcgtacttccaccagccctttgatctccagcatgatcagcgcttcacgtaccaccgtccgcgtgacatcaagcatttctgcactttcacgcttcgccggcagccgttccccaggat                                                                                           >  2:180144‑M1/1‑111 (MQ=255)                                                                                                                                                                     gTGCGCCATTGCCTGCGAACCGTTCCGTCAGTGGGTGATTGAAGATAACTTCGTTAATGGTCGCCCGGATTGGGATAAAGTGGGCGCACAGTTCGTTGCAGACGTTGTGCCGTTCGAAATGATGAAGCTGCGTATGCTGAACGGCAGCCACTCTTTTCTGGCGTACCTCGGTTACCTCGGCGGCTATGAAACCATTGCCGACACCGTGACTAACCCGGCTTATCGCAAAGCGGCCTTTGCCCTGATGATGCAGGAACAAGCGCCAACGCTGTCGATGCCGGAAGGTACa                                                                                       >  1:17471/1‑289 (MQ=255)                                                                                                                                                                      tGCGCCATTGCCTGCGAACCGTTCCGTCAGTGGGTGATTGAAGATAACTTCGTTAATGGTCGCCCGGATTGGGATAAAGTGGGCGCACAGTTCGTTGCAGACGTTGTGCCGTTCGAAATGATGAAGCTGCGTATGCTGAACGGCAGCCACTCTTTTCTGGCGTACCTCGGTTACCTCGGCGGCTATGAAACCATTGCCGACACCGTGACTAACCCGGCTTATCGCAAAGCGGCCTTTGCCCTGATGATGCAGGAACAAGCGCCAACGCTGTCGATGCCGGAAGGTACAg                                                                                      >  1:81312/1‑289 (MQ=255)                                                                                                                                                                      tGCGCCATTGCCTGCGAACCGTTACGTCAGTGGGAGATTGAAGATAACTTCGTTAATGGTCGCCCGGATTGGGATAAAGTGGGCGCACAGTTCGTTGCAGACGTTGTGCCGTTCGAAATGATGAAGCTGCGTATGCTGAACGGCAGCCACTCTTTTATGGCGTACCTCGGTTACCTCGGCGGCTATGAAACCATTGCCGACACCGTGACTAACACGGCTTATCGCACAGCGGCCTTTGCCCTGATGACGCAGGAACAAGCGCCAACGCTGTCGATGCCGCACGGTaaaa                                                                                      >  1:283744/1‑286 (MQ=255)                                                                                                                                                                           cATTGCCTGCGAACCGTTCCGTCAGTGGGTGATTGAAGATAACTTCGTTAATGGTCGCCCGGATTGGGATAAAGTGGGCGCACAGTTCGTTGCAGACGTTGTGCCGTTCGAAATGATGAAGCTGCGTATGCTGAACGGCAGCCACTCTTTTCTGGCGTACCTCGGTTACCTCGGCGGCTATGAAACCATTGCCGACACCGTGACTAACCCGGCTTATCGCAAAGCGGCCTTTGCCCTGATGATGCAGGAACAAGCGCCAACGCTGTCGATGCCGGAAGGTACAGACCTg                                                                                 <  1:241275/289‑1 (MQ=255)                                                                                                                                                                                  tGCGAACCGTTCCGTCAGTGGGTGATTGAAGATAACTTCGTTAATGGTCGCCCGGATTGGGATAAAGTGGGCGCACAGTTCGTTGCAGACGTTGTGCCGTTCGAAATGATGAAGCTGCGTATGCTGAACGGCAGCCACTCTTTTCTGGCGTACCTCGGTTACCTCGGCGGCTATGAAACCATTGCCGACACCGTGACTAACCCGGCTTATCGCAAAGCGGCCTTTGCCCTGATGATGCAGGAACAAGCGCCAACGCTGTCGATGCCGGa                                                                                              <  1:27454/269‑1 (MQ=255)                                                                                                                                                                                  tGCGAACCGTTCCGTCAGTGGGTGATTGAAGATAACTTCGTTAATGGTCGCCCGGATTGGGATAAAGTGGGCGCACAGTTCGTTGCAGACGTTGTGCCGTTCGAAATGATGAAGCTGCGTATGCTGAACGGCAGCCACTCTTTTCTGGCGTACCTCGGTTACCTCGGCGGCTATGAAACCATTGCCGACACCGTGACTAACCCGGCTTATCGCAAAGCGGCCTTTGCCCTGATGATGCAGGAACAAGCGCCAACGCTGTCGATGCCGGa                                                                                              >  2:27454/1‑269 (MQ=255)                                                                                                                                                                                                    tGGGTGATTGAAGATAACTTCGTTAATGGTCGCCCGGATTGGGATAAAGTGGGCGCACAGTTCGTTGCAGACGTTGTGCCGTTCGAAATGATGAAGCTGCGTATGCTGAACGGCAGCCACTCTTTTCTGGCGTACCTCGGTTACCTCGGCGGCTATGAAACCATTGCCGACACCGTGACTAACCCGGCTTATCGCAAAGCGGCCTTTGCCCTGATGATGCAGGAACAAGCGCCAACGCTGTCGATGCCGGAAGGTACAGACCTGAACGCCTATGCGACGCTGCTGATc                                                         <  2:17471/288‑1 (MQ=255)                                                                                                                                                                                                                gATAACTTCGTTAATGGTCGCCCGGATTGGGATAAAGTGGGCGCACAGTTCGTTGCAGACGTTGTGCCGTTCGAAATGATGAAGCTGCGTATGCTGAACGGCAGCCACTCTTTTCTGGCGTTCCTCGGTTACCTCGGCGGCTATGAAACCATTGCCGACACCGTGACTAACCCGGCTTATCGCAAAGCGGCCTTTGCCCTGATGATGCAGGAACAAGCGCCAACGCTGTCGATGCCGGAAGGTACAGACCTGAACGCCTATGCGACGCTGCTGATCGAGCGTTTCAGCa                                            >  2:189363/1‑289 (MQ=255)                                                                                                                                                                                                                                gTCGCCCGGATTGGGATAAAGTGGGCGCACAGTTCGTTGCAGACGTTGTGCCGTTCGAAATGATGAAGCTGCGTATGCTGAACGGCAGCCACTCTTTTCTGGCGTACCTCGGTTACCTCGGCGGCTATGAAACCATTGCCGACACCGTGACTAACCCGGCTTATCGCAAAGc                                                                                                                                                 <  2:258946/172‑1 (MQ=255)                                                                                                                                                                                                                                gTCGCCCGGATTGGGATAAAGTGGGCGCACAGTTCGTTGCAGACGTTGTGCCGTTCGAAATGATGAAGCTGCGTATGCTGAACGGCAGCCACTCTTTTCTGGCGTACCTCGGTTACCTCGGCGGCTATGAAACCATTGCCGACACCGTGACTAACCCGGCTTATCGCAAAGc                                                                                                                                                 >  1:258946/1‑172 (MQ=255)                                                                                                                                                                                                                                                   aGTGGGCGCACAGTTCGTTGCAGACGTTGTGCCGTTCGAAATGATGAAGCTGCGTATGCTGAACGGCAGCCACTCTTTTCTGGCGTACCTCGGTTACCTCGGCGGCTATGAAACCATTGcc                                                                                                                                                                                 <  1:221761/121‑1 (MQ=255)                                                                                                                                                                                                                                                   aGTGGGCGCACAGTTCGTTGCAGACGTTGTGCCGTTCGAAATGATGAAGCTGCGTATGCTGAACGGCAGCCACTCTTTTCTGGCGTACCTCGGTTACCTCGGCGGCTATGAAACCATTGcc                                                                                                                                                                                 >  2:221761/1‑121 (MQ=255)                                                                                                                                                                                                                                                          gcACAGTTCGTTGCAGACGTTGTGCCGTTCGAAATGATGAAGCTGCGTATGCTGAACGGCAGCCACTCTTTTCTGGCGTACCTCGGTTACCTCGGCGGCTATGAAACCATTGCCGACACCGTGACTAACCCGGCTTATCGCAAAGCGGCCTTTGCCCTGATGATGCAGGAACAAGCGCCAACGCTGTCGATGCCGGAAGGTACAGACCTGAACGCCTATGCGACGCTGCTGATCGAGCGTTTCAGCAACCCGTCTCTGCGTCACCGTACCTGGCAGATTGCGATGGACg  <  2:81312/289‑1 (MQ=255)                                                                                                                                                                                                                                                                   gTTGCAGACGTTGgcatccggactgtctgtgttctggctgcctgagttatcaagaacatagataccggcaccccggcgtacttccaccagccctttgatctccagcatgatcagcgcttcacgtaccaccgtccgcgtgacatcaagcatttctgcaatttcacgctccggcggcagccgttcgccaggattgtacggcgtctttatgatcagatcgcggatcatcgccccgacttcctggtaaggtctttgcgcagaggtggc                  <  2:90975‑M1/264‑252 (MQ=255)                                                                                                                                                                                                                                                                   gTTGCAGACGTTGgcatccggactgtctgtgttctggctgcctgagttatcaagaacatagataccggcaccccggcgtacttccaccagccctttgatctccagcatgatcagcgcttcacgtaccaccgtccgcgtgacatcaagcatttctgcaatttcacgctccggcggcagccgttcgccaggattgtacggcgtctttatgatcagatcgcggatcatcgccccgacttcctggtaaggtctttgcgcagaggtggc                  >  1:90975‑M1/1‑13 (MQ=255)                                                                                                                                                                                                                                                                    ttGCAGACGTTGgcatccggactgtctgtgttctggctgcctgagttatcaagaacatagataccggcaccccggcgtacttccaccagccctttgatctccagcatgatcagcgcttcacgtaccaccgtccgcgtgacatcaagcatttctgcaatttcacgctccggcggcagccgttcgccaggattgtacggcgtctttatgatcagatcgcggatcatcgccccgacttc                                             >  2:5823‑M1/1‑12 (MQ=255)                                                                                                                                                                                                                                                                    ttGCAGACGTTGgcatccggactgtctgtgttctggctgcctgagttatcaagaacatagataccggcaccccggcgtacttccaccagccctttgatctccagcatgatcagcgcttcacgtaccaccgtccgcgtgacatcaagcatttctgcaatttcacgctccggcggcagccgttcgccaggattgtacggcgtctttatgatcagatcgcggatcatcgccccgacttc                                             <  1:5823‑M1/236‑225 (MQ=255)                                                                                                                                                                                                                                                                             ttGgcatccggactgtctgtgttctggctgcctgagttatcaagaacatagataccggcaccccggcgtacttccaccagccctttgatctccagcatgatcagcgcttcacgtaccaccgtccgcgtgacatcaagcatttctgcaatttcacgctccggcggcagccgttcgccaggattgtacggcgtctttatgatcagatcgcggatcatcgccccga                                                 >  2:314001‑M1/1‑3 (MQ=255)                                                                                                                                                                                                                                                                             ttGgcatccggactgtctgtgttctggctgcctgagttatcaagaacatagataccggcaccccggcgtacttccaccagccctttgatctccagcatgatcagcgcttcacgtaccaccgtccgcgtgacatcaagcatttctgcaatttcacgctccggcggcagccgttcgccaggattgtacggcgtctttatgatcagatcgcggatcatcgccccga                                                 <  1:314001‑M1/223‑221 (MQ=255)                                                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                                                            GCGAAGGTCGCGGTACTGGGGCTGGCTCAGGCGCGTGACCCGCAGCTGGCGGCATGGATTGAAGAAAATGTCACCTTCCCGTGCACCATGGTTGACCGCATCGTTCCGGCGGCGACGCCAGAAACCTTACAGGAAATTGCTGACCAGCTGGGTGTTTACGACCCGTGCGCCATTGCCTGCGAACCGTTCCGTCAGTGGGTGATTGAAGATAACTTCGTTAATGGTCGCCCGGATTGGGATAAAGTGGGCGCACAGTTCGTTGCAGACGTTGTGCCGTTCGAAATGATGAAGCTGCGTATGCTGAACGGCAGCCACTCTTTTCTGGCGTACCTCGGTTACCTCGGCGGCTATGAAACCATTGCCGACACCGTGACTAACCCGGCTTATCGCAAAGCGGCCTTTGCCCTGATGATGCAGGAACAAGCGCCAACGCTGTCGATGCCGGAAGGTACAGACCTGAACGCCTATGCGACGCTGCTGATCGAGCGTTTCAGCAACCCGTCTCTGCGTCACCGTACCTGGCAGATTGCGATGGACG  >  NC_000913/4553484‑4554021

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.