New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4602976 =26 (0.770)4 (0.120) 4/484 NT 14.5% intergenic (‑117/‑502) yjjP/yjjQ DUF1212 family inner membrane protein/putative transcriptional regulator
?NC_000913 4603101 = 22 (0.670)intergenic (‑242/‑377) yjjP/yjjQ DUF1212 family inner membrane protein/putative transcriptional regulator

ACGGCTCGCTGTTGCTCAGTTTGCATAACTCGCCCTTTGTCATAGACGTGCTGCGTATTGTTCAGATAATGAGAATCCATTTGTATCATGAAGCACGGTTGTTTTGCGGTAGGTTAAGATCAAAATTGCGCTGATTAATCCTGGTTATCGGGAGAAGCTCGGTGATAAAAAGCGAATTATCTCTCGCCGCAAACAAACTATCACATGAATATTATCATCATAATGAATTTATTGTTTGGCCTTTACGAATCAGGATAATAGATAACCGGGCACGTTTTTTAATGTTAACAAGCTAAAACCATCAGATTTCATTGAATAAATATTGGTTGTGTGATTTTGCATTCTGCGGGAAGGGATATCATTTAATTATAAATTAAATGAATGTGATTTCTGTTTTTCATTAAGTATTCCTAACAACTTAATGTAGATATTTTAAATGTCTCCAGGCTATTTCACCAGGTTATCATTTGATGCTAACCTTCTGACACATGCAGTGGAG  >  NC_000913/4602834‑4603332
                                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                       
aCGGCTCGCTGTTGCTCAGGTTGCATAACTCGCCCTTTGTCATAGACGTGCTGCGTATTGTTCAGATAATGAGAATCCATTTGTATCATGAAGCACGGTTGTTTTGCGGTAGGTTAAGATCAAAATTGCGCTGATTAATCCTGGTTATCGGGAGAAGCTCGGTGATAAAAAGCGAATTATCTCTCGCCGCAAACAAACTATCACATGAATATTATCATCATAATGAATTTATTGTTTGGCCTTTACGAATCAGGATAATAGATAACCGGGCACGTTTTTTAATGTTAAc                                                                                                                                                                                                                    <  2:245327/289‑1 (MQ=255)
                           aCTCGCCCTTTGTCATAGACGTGCTGCGTATTGTTCAGATAATGAGAATCCATTTGTATCATGAAGCACGGTTGTTTTGCGGTAGGTTAAGATCAAAATTGCGCTGATTAATCCTGGTTATCGGGAGAAGCTCGGTGATAAAAAGCGAATTATCTCTCGCCGCAAACAAACTATCACATGAATATTATCATCATAATGAATTTATTGTTTGGCCTTTACGAATCAGGATAATAGATAACCGGGCACGTTTTTTAATGTTAACAAGCTAAAACCATCAGATTTCATTGaa                                                                                                                                                                                         <  1:18114/289‑1 (MQ=255)
                                           aGACGTGCTGCGTATTGTTCAGATAATGAGAATCCATTTGTATCATGAAGCACGGTTGTTTTGCGGTAGGTTAAGATCAAAATTGCGCTGATTAATCCTGGTTATCGGGAGAAGCTCGGTGATAAAAAGCGAATTATCTCTCGCCGCAAACAAACTATCACATGAATATTATCATCATAATGAATTTATTGTTTGGCCTTTACGAATCAGGATAATAGATAACCGGGCACGTTTTTTAATGTTAACAAGCTAAAACCATCAGATTTCATTGAATAAATATTGGTtgtgt                                                                                                                                                                         >  1:269819/1‑289 (MQ=255)
                                                 gctgcGTATTGTTCAGATAATGAGAATCCATTTGTATCATGAAGCACGGTTGTTTTGCGGTAGGTTAAGATCAAAATTGCGCTGATTAATCCTGGTTATCGGGAGAAGCTCGGTGATAAAAAGCGAATTATCTCTCGCCGCAAACAAACTATCACATGAATATTATCATCATAATGAATTTATTGTTTGGCCTTTACGAATCAGGATAATAGATAACCGGGCACGTTTTTTAATGTTATCAAGCTAAAACCATCAGATTTCATTGaa                                                                                                                                                                                         <  2:7630/267‑1 (MQ=255)
                                                 gctgcGTATTGTTCAGATAATGAGAATCCATTTGTATCATGAAGCACGGTTGTTTTGCGGTAGGTTAAGATCAAAATTGCGCTGATTAATCCTGGTTATCGGGAGAAGCTCGGTGATAAAAAGCGAATTATCTCTCGCCGCAAACAAACTATCACATGAATATTATCATCATAATGAATTTATTGTTTGGCCTTTACGAATCAGGATAATAGATAACCGGGCACGTTTTTTAATGTTATCAAGCTAAAACCATCAGATTTCATTGaa                                                                                                                                                                                         >  1:7630/1‑267 (MQ=255)
                                                 gctgcGTATTGTTCAGATAATGAGAATCCATTTGTATCATGAAGCACGGTTGTTTTGCGGTAGGTTAAGATCAAAATTGCGCTGATTAATCCTGGTTATCGGGAGAAGCTCGGTGATAAAAAGCGAATTATCTCTCGCCGCAAACAAACTATCACATGAATATTATCATCATAATGAATTTATTGTTTGGCCTTTACGAATCAGGATAATAGATAACCGGGCACGTTTTTTAATGTTAACAAGCTAAAACCATCAGATTTCATTGaataaata                                                                                                                                                                                   <  1:283208/273‑1 (MQ=255)
                                                 gctgcGTATTGTTCAGATAATGAGAATCCATTTGTATCATGAAGCACGGTTGTTTTGCGGTAGGTTAAGATCAAAATTGCGCTGATTAATCCTGGTTATCGGGAGAAGCTCGGTGATAAAAAGCGAATTATCTCTCGCCGCAAACAAACTATCACATGAATATTATCATCATAATGAATTTATTGTTTGGCCTTTACGAATCAGGATAATAGATAACCGGGCACGTTTTTTAATGTTAACAAGCTAAAACCATCAGATTTCATTGaataaata                                                                                                                                                                                   >  2:283208/1‑273 (MQ=255)
                                                       tATTGTTCAGATAATGAGAATCCATTTGTATCATGAAGCACGGTTGTTTTGCGGTAGGTTAAGATCAAAATTGCGCTGATTAATCCTGGTTATCGGGAGAAGCTCGGTGATAAAAAGCGAATTATCTCTCGCCGCAAACAAACTATCACATGAATATTATCATCATAATGAATTTATTGTTTGGCCTTTACGAATCAGGATAATAGATAACCGGGCACGTTTTTTAATGTTAACAAGCTAAAACCATCAGATTTCATTGAATAAATATTGGTTGTGTGATTTTGCAt                                                                                                                                                               >  1:226016/1‑287 (MQ=255)
                                                             tCAGATAATGAGAATCCATTTGTATCATGAAGCACGGTTGTTTTGCGGTAGGTTAAGATCAAAATTGCGCTGATTAATCCTGGTTATCGGGAGAAGCTCGGTGATAAAAAGCGAATTATCTCTCGCCGCAAACAAACTATCACATGAATATTATCATCATAATGAATTTATTGTTTGGCCTTTACGAATCAGGATAATAGATAACCGGGCACGTTTTTTAATGTTAACAAGCTAAAACCATCAGATTTCATTGAATAAATATTGGTTGTGTGATTTTGCATTCTGCggg                                                                                                                                                       <  2:269819/289‑1 (MQ=255)
                                                                 aTAATGAGAATCCATTTGTATCATGAAGCACGGTTGTTTTGCGGTAGGTTAAGATCAAAATTGCGCTGATTAATCCTGGTTATCGGGAGAAGCTCGGTGATAAAAAGCGAATTATCTCTCGCCGCAAACAAACTATCACATGAATATTATCATCATAATGAATTTATTGTTTGGCCTTTACGAATCAGGATAATAGATAACCGGGCACGTTTTTTAATGTTAACAAGCTAAAACCATCAGATTTCATTTAATAAATATTGGTTGTGGGATTTTGCATTCTGCGGGAAgg                                                                                                                                                   >  2:235115/1‑289 (MQ=255)
                                                                 aTAATGAGAATCCATTTGTATCATGAAGCACGGTTGTTTTGCGGTAGGTTAAGATCAAAATTGCGCTGATTAATCCTGGTTATCGGGAGAAGCTCGGTGATAAAAAGCGAATTATCTCTCGCCGCAAACAAACTATCACATGAATATTATCATCATAATGAATTTATTGTTTGGCCTTTACGAATCAGGATAATAGATAACCGGGCACGTTTTTTAATGTTAACAAGCTAAAACCATCAGATTTCATTGAATAAATATTGGTTGTGTGATTTTGCATTCTGCGGGAAgg                                                                                                                                                   >  2:296055/1‑289 (MQ=255)
                                                                               tttGTATCATGAAGCACGGTTGTTTTGCGGTAGGTTAAGATCAAAATTGCGCTGATTAATCCTGGTTATCGGGAGAAGCTCGGTGATAAAAAGCGAATTATCTCTCGCCGCAAACAAACTATCACATGAATATTATCATCATAATGAATTTATTGTTTGGCCTTTACGAATCAGGATAATAGATAACCGGGCACGTTTTTTAATGTTAACAAGCTAAAACCATCAGATTTCATTGAATAAATATTGGTTGTGTGATTTTGCATTCTGCGGGAAGGGATATCATTTAAtt                                                                                                                                     >  1:160757/1‑289 (MQ=255)
                                                                                                 gttgttTTGCGGTAGGTTAAGATCAAAATTGCGCTGATTAATCCTGGTTATCGGGAGAAGCTCGGTGATAAAAAGCGAATTATCTCTCGCCGCAAACAAACTATCACATGAATATTATCATCATAATGAATTTATTGTTTGGCCTTTACGAATCAGGATAATAGATAACCGGGCACGTTTTTTAATGTTAACAAGCTAAAACCATCAGATTTCATTGAATAAATATTGGTTGTGTGATTTTGCATTCTGCGGGACGGGATATCATTTAATTATAAATTAAATGAAtgtg                                                                                                                   >  1:96795/1‑289 (MQ=255)
                                                                                                  ttgttTTGCGGTAGGTTAAGATCAAAATTGCGCTGATTAATCCTGGTTATCGGGAGAAGCTCGGTGATAAAAAGCGAATTATCTCTCGCCGCAAACAAACTATCACATGAATATTATCATCATAATGAATTTATTGTTTGGCCTTTACGAATCAGGATAATAGATAACCGGGCACGTTTTTTAATGTTAACAAGCTAAAACCATCAGATTTCATTGAATAAATATTGGTTGTGTGATTTTGCATTCTGCGGGAAGGGATATCATTTAATTATAAATTAAATGAATGTGa                                                                                                                  >  2:71061/1‑289 (MQ=255)
                                                                                                          cGGTAGGTTAAGATCAAAATTGCGCTGATTAATCCTGGTTATCGGGAGAAGCTCGGTGATAAAAAGCGAATTATCTCTCGCCGCAAACAAACTATCACATGAATATTATCATCATAATGAATTTATTGTTTGGCCTTTACGAATCAGGATAATAGATAACCGGGCACGTTTTTTAATGTTAACAAGCTAAAACCATCAGATTTCAt                                                                                                                                                                                             >  2:138315/1‑206 (MQ=255)
                                                                                                          cGGTAGGTTAAGATCAAAATTGCGCTGATTAATCCTGGTTATCGGGAGAAGCTCGGTGATAAAAAGCGAATTATCTCTCGCCGCAAACAAACTATCACATGAATATTATCATCATAATGAATTTATTGTTTGGCCTTTACGAATCAGGATAATAGATAACCGGGCACGTTTTTTAATGTTAACAAGCTAAAACCATCAGATTTCAt                                                                                                                                                                                             <  1:138315/206‑1 (MQ=255)
                                                                                                                                 gcTGATTAATCCTGGTTATCGGGAGAAGCTCGGTGATAAAAAGCGAATTATCTCTCGCCGCAAACAAACTATCACATGAATATTATCATCATAATGAATTTATTGTTTGTCCTTTACGAATCAGGATAATAGATAACCGGGCACGTTTTTTAATGTTAACAAGCTAAAACCATCATATTTCATTGAATAAATATTGGTTGTGTGATTTTGCATTCTGCGGGAAGGGATATCATTTAATTATAAATTAAATGAATGTGATTTCTGTTTTTCATTAAGTATTCCTaacaac                                                                                   <  1:235115/289‑1 (MQ=255)
                                                                                                                                       tAATCCTGGTTATCGGGAGAAGCTCGGTGATAAAAAGCGAATTATCTCTCGCCGCAAACAAACTATCACATGAATATTATCATCATAATGAATTTATTGTTTGGCCTTTACGAATCAGGATAATAGATAACCGGGCACGTTTTTTAATGTTAACAAGCTAAAACCATCAGATTTCATTGAATAAATATTGGTTGTGTGATTTTGCATTCTGCGGGAAGGGATATCATTTAATTATAAATTAAATGAATGTGATTTCTGTTTTTCATTAAGTATTCCTAACAACTTAATg                                                                             <  2:54484/289‑1 (MQ=255)
                                                                                                                                           ccTGGTTATCGGTAGAAGCTCGGTGATAAAAAGCGAATTATCTCTCGCCGCAAACAAACTATCACATGAATATTATCATCATAATGAATTTATTGTTTGGCCTTTACGAATCAGGATAATAGATAACCGGGCACGTTTTTTAATGTTAACAAGCTAAAACCATCAGATTTCATTGAATAAATATTGGTTGTGTGATTTTGCATTCTGCGGGAAGGGATATCATTTAATTATAAATTAAATGAATGTGATTTCTGTTTTTCATTAAGTATTCCTAACAACTTAATGTAGa                                                                         <  1:296055/289‑1 (MQ=255)
                                                                                                                                                                                          ttatgatgataatattcatgtgatagtttgtttgcggcgagagataattcgctttttatcaccgagcttctcccgataaccGGGCACGTTTTTTAATGTTAACAAGCTAAAACCATCAGATTTCATTGAATAAATATTGGTTGTGTGATTTTGCATTCTGCGGGAAGGGATATCATTTAATTATAAATTAAATGAATGTGATTTCTGTTTTTCATTAAGTATTCCTAACAACTTAATGTAGATATTTTAAATGTCTCCAGGCt                                                    <  2:190525‑M2/182‑1 (MQ=255)
                                                                                                                                                                                          ttatgatgataatattcatgtgatagtttgtttgcggcgagagataattcgctttttatcaccgagcttctcccgataaccGGGCACGTTTTTTAATGTTAACAAGCTAAAACCATCAGATTTCATTGAATAAATATTGGTTGTGTGATTTTGCATTCTGCGGGAAGGGATATCATTTAATTATAAATTAAATGAATGTGATTTCTGTTTTTCATTAAGTATTCCTAACAACTTAATGTAGATATTTTAAATGTCTCCAGGCt                                                    >  1:190525‑M2/82‑263 (MQ=255)
                                                                                                                                                                                                     cTATCACATGAATATTATCATCATAATGAATTTATTGTTTGGCCTTTACGAATCAGGATAATAGATAACCGGGCACGTTTTTTAATGTTAACAAGCTAAAACCATCAGATTTCATTGAATAAATATTGGTTGTGTGATTTTGCATTCTGCGGGAAGGGATATCATTTAATTATAAATTAAATGAATGTGATTTCTGTTTTTCATTAAGTATTCCTAACAACTTAATGTAGATATTTTAAATGTCTCCAGGCTATTTCACCAGGTTATCATTTGATGCTAACCTTCTGac               <  2:226016/289‑1 (MQ=255)
                                                                                                                                                                                                     cTATCACATGAATATTATCATCATAATGAATTTATTGTTTGGCCTTTACGAATCAGGATAATAGATAACCGGGCACGTTTTTTAATGTTAACAAGCTAAAACCATCAGATTTCATTGAATAAATATTGGTTGTGTGATTTTGCATTCTGCGGGAAGGGATATCATTTAATTATAAATTAAATGAATGTGATTTCTGTTTTTCATTAAGTATTCCTAACAACTTAATGTAGATATTTTAAATGTCTCCAGGCTATTTCACCAGGTTATCATTTGATGCTAACCTTCTGac               <  2:96795/289‑1 (MQ=255)
                                                                                                                                                                                                                  attatCATCATAATGAATTTATTGTTTGGCCTTTACGAATCAGGATAATAGATAACCGGGCACGTTTTTTAATGTTAACAAGCTAAAACCATCAGATTTCATTGAATAAATATTGGTTGTGTGATTTTGCATTCTGCGGGAAGGGATATCATTTAATTATAAATTAAATGAATGTGATTTCTGTTTTTCATTAAGTATTCCTAACAACTTAATGTAGATATTTTAAATGTCTCCAGGCTATTTCACCAGGTTATCATTTGATGCTAACCTTCTGACACATGCAGTGGAg  <  1:312078/289‑1 (MQ=255)
                                                                                                                                                                                                                        tttgcggcgagagataattcgctttttatcaccgagcttctcccgataaccGGGCACGTTTTTTAATGTTAACAAGCTAAAACCATCAGATTTCATTGAATAAATATTGGTTGTGTGATTTTGCATTCTGCGGGAAGGGATATCATTTAATTATAAATTAAATGAATGTGATTTCTGTTTTTCATTAAGTa                                                                                              >  2:277924‑M2/52‑191 (MQ=255)
                                                                                                                                                                                                                        tttgcggcgagagataattcgctttttatcaccgagcttctcccgataaccGGGCACGTTTTTTAATGTTAACAAGCTAAAACCATCAGATTTCATTGAATAAATATTGGTTGTGTGATTTTGCATTCTGCGGGAAGGGATATCATTTAATTATAAATTAAATGAATGTGATTTCTGTTTTTCATTAAGTa                                                                                              <  1:277924‑M2/140‑1 (MQ=255)
                                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                       
ACGGCTCGCTGTTGCTCAGTTTGCATAACTCGCCCTTTGTCATAGACGTGCTGCGTATTGTTCAGATAATGAGAATCCATTTGTATCATGAAGCACGGTTGTTTTGCGGTAGGTTAAGATCAAAATTGCGCTGATTAATCCTGGTTATCGGGAGAAGCTCGGTGATAAAAAGCGAATTATCTCTCGCCGCAAACAAACTATCACATGAATATTATCATCATAATGAATTTATTGTTTGGCCTTTACGAATCAGGATAATAGATAACCGGGCACGTTTTTTAATGTTAACAAGCTAAAACCATCAGATTTCATTGAATAAATATTGGTTGTGTGATTTTGCATTCTGCGGGAAGGGATATCATTTAATTATAAATTAAATGAATGTGATTTCTGTTTTTCATTAAGTATTCCTAACAACTTAATGTAGATATTTTAAATGTCTCCAGGCTATTTCACCAGGTTATCATTTGATGCTAACCTTCTGACACATGCAGTGGAG  >  NC_000913/4602834‑4603332

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.