| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,977,594 | +C | coding (998/1032 nt) | galR → | galactose‑inducible d‑galactose regulon transcriptional repressor, autorepressor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,977,593 | 1 | . | C | 95.9% | 135.4 / ‑1.5 | 49 | coding (997/1032 nt) | galR | galactose‑inducible d‑galactose regulon transcriptional repressor, autorepressor |
| Reads supporting (aligned to +/- strand): ref base . (1/1); new base C (23/24); total (24/25) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.93e-01 | |||||||||||
CGTGCGTTACCCAATCGTGACGATGGCGACCCAGGCTGCCGAACTGGCTTTGGCGCTGGCGGATAATCGCCCTCTCCCG‑GAAATCACTAATGTCTTTAGTCCGACGCTGGTACGTCGTCATTCAGTGTCAACTCC‑G‑T‑CGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAACTTCTGGTAACAGC > NC_000913/2977457‑2977728 | cGTGCGTTACCCAATCGTGACGATGGCGACCCAGGCTGCCGAACTGGCTTTGGCGCTGGCGGATAATCGCCCTCTCCCG‑GAAATCACTAATGTCTTTAGTCCGACGCTGGTACGTCGTCATTCAGTGTCAACTCC‑G‑T‑ccgctg > 1:379138/1‑138 (MQ=255) ggctgtgcccAATCGTGACGATGGCGACCCAGGCTGCCGAACTGGCTTTGGCGTTGGCGGATAATCGCCCTCTCCCG‑GAAATCACTAATGTCTTTAGTCCGACGCTGGTACGTCGTCATTCAGTGTCAACTCC‑G‑TCCGCTGGa < 1:464819/136‑1 (MQ=255) ttACCCAATCGTGACGATGGCGACCCAGGCTGCCGAACTGGCTTTGGCGCTGGCGGATAATCGCCCTCTCCCG‑GAAATCACTAATGTCTTTAGTCCGACGCTGGTACGTCGTCATTCAGTGTCAACTCC‑G‑TCCGCTGGAGGCa < 1:152553/143‑1 (MQ=255) cccAATCGTGACGATGGCGACCCAGGCTGCCGAACTGGCTTTGGCGCTGGCGGATAATCGCCCTCTCCCG‑GAAATCACTAATGTCTTTAGTCCGACGCTGGTACGTCGTCATTCAGTGTCAACTCC‑G‑TCCGCTGGAGGCAAGt > 2:22088/1‑143 (MQ=255) ccAATTGTGACGATGGCGACCCAGGGTGCCGAACCGGCTTTGGCGCTGGCGGATAATCGCCCGCTCCCG‑GAAATCACTAATGTCTTTAGTCCGACGCTGGTACGTCGTCATTCAGTGTCAACTCC‑G‑TCCGCTGGAGGCAAGtc < 2:855282/143‑1 (MQ=255) ccAATCGTGACGATGACGACCCAGGCTTCCGAACTGGCTTTGGCGCTGGCGGATAATCGCCCTCTCCCG‑GAAATCACTAATGTCTTTAGTCCGACGCTGGTACGTCGTCATTCAGTGTCAACTCC‑G‑TCCGCCGGCGGCAAgcc > 1:439184/1‑141 (MQ=255) aaTCGTGACGATGGCGACCCAGGCTGCCGAACTGGCTTTGGCGCTGGCGGATAATCGCCCTCTCCCG‑GAAATCACTAATGTCTTTAGTCCGACGCTGGTACGTCGTCATTCAGTGTCAACTCC‑G‑TCCGCTGGAGGCAAGtcat < 2:238811/143‑1 (MQ=255) tCGTGACGATGGCGACCCAGGCTGCCGAACTGGCTTTGGCGCTGGCGGATAATCGCCCTCTCCCG‑GGAATCACTCATGTCTTTAGTCCGACGCTGGTACGTCGTCGTTCCGTGTCCGCACC‑G‑TCCGGTGGAGGCAAGacatcg > 1:686951/1‑142 (MQ=255) gTGACGATGGCGACCCAGGCTGCCGAACTGGCTTTGGCGCTGGCGGATAATCGCCCTCTCCCG‑GAAATCACTAATGTCTTTAGTCCGACGCTGGTACGTCGTCATTCCGTGTCAACTCC‑G‑TCCGCTGGAGGCAAGTCATCATg > 2:689655/1‑143 (MQ=255) ggcggcCCAGGCTGCCGTACTGGCTTTGGCGGTGGTGGATCCTAGATCTCACCCGCGACTAAACTCA‑GTCCTTAGTACGACGCTGGTACGTCGTCATCATGTGTCAACTCCTG‑A‑CTTTGCTGGCAAGTCATCATGCAACCAGc < 1:16948/143‑1 (MQ=255) ggagccgggcggcCGAACGGGGTTTGGCGCTGGCGGACAATCGCCCTCTCCCG‑GAAATCACTAATGTCTTTAGTCCGACGCTGGTACGTCGTCATTCAGTGTCAACTCC‑G‑TCCGCTGGAGGCAAGTCATCATGCAACCAGCGa < 2:607697/136‑1 (MQ=255) cGACCCAGGCTGCCGAACTGGCTTTGGCGCTGGCGGATAATCGCCCTCTCCCG‑GAAATCACTAATGTCTTTAGTCCGACGCTGGTACGTCGTCATTCAGTGTCAACTCC‑G‑TCCGCTGGAGGCAAGTCATCATGCAACCAGCGa < 1:373870/143‑1 (MQ=255) cAGGCTGCCGACCTGGCTTTGGCGCTGGCGGATAATCGCCCTCTCCCG‑GAAATCACTAATGTCTTTAGTCCGACGCTGGTACGTCGTCATTCAGTGTCAACTCC‑G‑TCCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAAc < 1:638866/143‑1 (MQ=255) cAGGCTGCCGAACTGGCTTTGGCGCTGGCGGATAATCGCCCTCTCCCG‑GAAATCACTAATGTCTTTAGTCCGACGCTGGTACGTCGTCATTCAGTGTCAACTCC‑G‑TCCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAAc > 2:83320/1‑143 (MQ=255) cAGGCTGCCGAACTGGCTTTGGCGCTGGCGGATAATCGCCCTCTCCCG‑GAAATCACTAATGCCTGTAGTCAGACGCTGGTACGCCGCCATTCAGTGTCAACACC‑A‑TCCGCTGGCCGCCAGGCGCCCTGCAACCAGGGCCTact > 1:752609/1‑141 (MQ=255) aGGCTGCCGAACTGGCTTTGGCGCTGGCGGATAATCGCCCTCTCCCG‑GAAATCACTAATGTCTTTAGTCCGACGCTGGTACGTCGTCATTCAGTGTCAACTCC‑G‑TCCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAAcc < 2:103820/143‑1 (MQ=255) ggCTGCCGAACTGGCTTTGGCGCTGGCGGATAATCAAACTCTCACA‑CAAATCACTAATGTCTTTAGGCCGACGCTGGTACGTCGTCATTCAGTGTCAACTCC‑GCC‑CGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCg > 2:243400/1‑143 (MQ=255) tGCCGAACTGGCTTTGGCGCTGGCGGATAATCGCCCTCTCCCG‑GAAATCACTAATGTCTTTAGTCCGACGCTGGTACGTCGTCATTCAGTGTCAACTCC‑G‑TCCGCTGGAGGCAAGTCCTCATGCAACCAGCGACTAACCGCAg > 1:670663/1‑143 (MQ=255) tGCCGAACTGGCTTTGGCGCTGGCGGATAATCGCCCTCTCCCG‑GAAATCACTAATGTCTTTAGTCCGACGCTGGTACGTCGTCATTCAGTGTCAACTCC‑G‑TCCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAg < 2:379138/143‑1 (MQ=255) gCCGAACTGGTTTTGGCGCTGGCGGATAATCGCCCTCTCCCG‑TAAATCACTAATGTCTTTAGTCCGACGCTGGTACGTCGTCATTCAGTGTCAACTCC‑G‑TCCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCact < 2:89494/143‑3 (MQ=255) aaCTGGCGTTGGCGCTGGCGGATAATCGCCCTCTCCCG‑GAAATCACTAATGTCTTTAGTCCGACGCTGGTACGTCGTCATTCAGTGCCAACTCC‑G‑TCCGCTGGAGGCAAGCCATCATGCAACCAGCGACTAACCGCAGTTaaa < 2:712810/143‑1 (MQ=255) aCTGGCGCTGGCGCTGGCGGATGATCGCCCTCTCCCG‑GAAATCACTAATGTCCTTAGTAAGCCACTGGTACGTTGTCATTCAGCGTCGACTAC‑G‑TCCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAg < 1:9192/143‑1 (MQ=255) gCTTTGGCGCTGGCGGATAATCGCCCTCTCCCG‑GCAATCACTACTGTCTTTAGTCCGACGCTGGTACGTCGTCATTCAGTGTCAACTCC‑G‑TCCGCTGGAGGCAAGTCCTCATGCAACCAGCGACTAACCGCAGTTCAAGCAAt > 1:789357/1‑143 (MQ=255) tttGGCGCTGGCGGATAATCGCCCTCTCCCG‑GAAATCACTAATGTCTTTAGTCCGACGCTGGTACGTCGTCATTCAGTGTCAACTCC‑G‑TCCGCTGGAGGCAAGTCATCATGCAACCAGCGACTACCCCCAGTTAAAGCAAtcc > 1:681761/1‑141 (MQ=255) gcgcTGGCGGATAATCGCCCTCTCCCG‑GAAATCACTAATGTCTTTAGTCCGACGCTGGTACGTCGTCATTCCGGGTCAACTCC‑G‑TCCGCTGGAGGCAAGTCACCAGGCAACCAGCGACTAACCGCAGTTCAAGCCATCCCAgc > 2:310983/1‑143 (MQ=255) ggCGGATAATCGCCCTCTCCCG‑GAAATCACTAATGTCTTTAGTCCGACGCTCGTACGTCGTCATTCAGTGTCAACTCC‑G‑TCCGCTGCAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATCCCAGCGCCAg > 1:854570/1‑143 (MQ=255) gCGGATAATCGCCCTCTCCCG‑GAAATCACTAATGTCTTTAGTCCGACGCTGGTACGTCGTCATTCAGTGTCAACTCC‑G‑TCCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCCGt > 2:466082/1‑143 (MQ=255) aTCGCCCTCTCCCG‑GAAATCACTAATGTCTTTAGTCCGACGCTGGTACGTCGTCATTCAGTGTCAACTCC‑G‑TCCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAAttctt < 2:450893/143‑1 (MQ=255) tCGCCCTCTCCCG‑GAAATCACTAATGTCTTTAGTCCGACGCTGGTACGTCGTCATTCAGTGTCAACTCC‑G‑TCCGCAGGAGGCACGTCATCATGCAACCAGCCACTAACCCCAGGTAAAGCAATGCCAGCGCCAGtgacccatc > 1:83367/1‑135 (MQ=255) cccTCTCCCG‑GAAATCACTAATGTCTTTAGTCCGACGCTGGTACGTCGTCATTCAGTGTCAACTCC‑G‑TCCGCTGGAGGCAAGTCATCATGCAACCAGCGACTACCCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGAt > 1:117277/1‑143 (MQ=255) cccTCTCCCG‑GAAATCACTAATGTCTTTAGTCCGACGCTGGTACGTCGTCATTCAGTGTCAACTCC‑G‑TCCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAAtt > 1:34931/1‑121 (MQ=255) cccTCTCCCG‑GAAATCACTAATGTCTTTAGTCCGACGCTGGTACGTCGTCATTCAGTGTCAACTCC‑G‑TCCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAAtt < 2:34931/121‑1 (MQ=255) ccTCTCCCG‑GAAATCACTAATGTCTTTAGTCCGACGCTGGTACGCCGTCATGCAGTGTCAACACC‑G‑TCCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATg < 2:239847/143‑1 (MQ=255) ccG‑GAAATCACTAATGTCTTTAGTCCGACGCTGGTACGTCGTCATTCAGTGTCAACTCC‑G‑TCCGCTGGGGGCAAGTCATCATGCAACCAGCGACTAACCGCAGGTAAAGCAATTCCAGCGCCAGTCATTCTCCGATGGCCTgg > 1:865280/1‑143 (MQ=255) ccG‑GAAATCACTAATGGCGTCAGTGCGACGCTGGTACGTCGTCATTCAGTGCCAACTCC‑G‑TCCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTgg < 1:868212/143‑1 (MQ=255) cG‑GAACCCACTAATTTCTCTAGTCCGAGGCGGGTACGTCGGTATTCCGTGTCAACTCC‑G‑TCCGCTGGAGGGAAGCCATCATGCCACCCGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGc < 2:297146/143‑1 (MQ=255) cTAATGTCTTTAGTCCGACGCTGGTACGTCGTCATTCAGTGTCAACTCC‑G‑TCCGCTGGAGGCAAGTCATCATGCAACCAGCGCCTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATGCTGCGATGGTCTGGCGACGCCGaa > 1:661709/1‑143 (MQ=255) tttAGTCCGACGCTGGTACGTCGTCATTCAGTGTCAACTCC‑G‑TCCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTCACTCTTCGATGGTCTGGCGACGGCGAATCAAcccc > 1:724220/1‑141 (MQ=255) tCCGACGCTGGTACGTCGTCATTCAGTGTCAACTCC‑G‑TCCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGCATCAACCGCGCCTg > 2:496143/1‑143 (MQ=255) cGACGCTGGTACGTCGTCATTCAGTGTCAACTCC‑G‑TCCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCCGAc > 2:854906/1‑143 (MQ=255) gCTGGGGCGTCGTCAGTCAGTGTTGTCTCC‑G‑TCCGCTGGAGGCAAGTCATCATGCACCCAGCGACTAGCCGCAGTTAAAGCAATGCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCAtt < 1:363488/143‑1 (MQ=255) gTACGTCGTCATTCAGTGTCAACTCC‑G‑TCCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCa > 2:797669/1‑143 (MQ=255) tACGTCGTCATTCAGTGTCAACTCC‑G‑TCCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCaa < 2:633913/143‑1 (MQ=255) aCGTCGTCGTTCAGTGGCACCGCC‑G‑TCCGCGGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCaaa < 2:413474/143‑1 (MQ=255) aCGTCGTCATTCAGTGTCAACTCC‑G‑TCCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCaaa < 2:314129/143‑1 (MQ=255) ttCAGTGTCAACTCC‑G‑TCCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGCAATTCTTCGATGGTCTGGCGACGGCGACTCAACCGCGCCTGACCATGACCAAACAGAACTTc > 1:84810/1‑143 (MQ=255) cAGTGTCAACCCC‑G‑GCCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAACTTCTg < 2:43170/143‑1 (MQ=255) gtCAACTCC‑G‑TCCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAACTTCTGGTaa < 1:83320/143‑1 (MQ=255) tCAACTCC‑G‑TCCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCCATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCCAACAGAACTTCTGGTacc > 1:763980/1‑141 (MQ=255) aCTCC‑G‑TCCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAACTTCTGGTAACAGc < 2:334706/143‑1 (MQ=255) | CGTGCGTTACCCAATCGTGACGATGGCGACCCAGGCTGCCGAACTGGCTTTGGCGCTGGCGGATAATCGCCCTCTCCCG‑GAAATCACTAATGTCTTTAGTCCGACGCTGGTACGTCGTCATTCAGTGTCAACTCC‑G‑T‑CGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAACTTCTGGTAACAGC > NC_000913/2977457‑2977728 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |