| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3305902 = | 52 (1.040) | 3 (0.060) | 3/264 | 7.4 | 6.1% | intergenic (‑87/+67) | mtr/deaD | tryptophan transporter of high affinity/ATP‑dependent RNA helicase |
| ? | NC_000913 | 3305927 = | 43 (0.920) | intergenic (‑112/+42) | mtr/deaD | tryptophan transporter of high affinity/ATP‑dependent RNA helicase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAACGACGACGACCGGTAGAATCATCACGACGCGGAGCGCGGCCTTCACGACG > NC_000913/3305761‑3306037 | tCACCACGCCGCCAAGCAGCGACGGTGACGGTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAGAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACACGAGGACAAAAGACAGAAAAagag > 2:32949/1‑143 (MQ=255) accacGCCGCCAAGCAGCGACGGGGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACACGAGTACAAAAGACAGAAAAAAAGcc < 2:845967/143‑1 (MQ=255) ccacGCCGCCACGTAGCGACGGTGACGTTTTGGTGGGGGTTATTGTTGCCATGATGGCTTCTCTCCAGTAAAAACTAGTGCGACTGCGTTGTTATGCATTGCACTGTACCATTACACGAGTACAAAAGACAGAAAAAAAGccc < 1:364642/143‑1 (MQ=255) ccgccAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTCCGTTGTTATGCATTGCACTGTACCAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGATg > 2:440890/1‑143 (MQ=255) gggagcGACGGTGACGTTTGGGTGGTGGTGAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTGATGCATTGCACTGTACCAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTaaaa < 2:631354/140‑1 (MQ=255) tgACGGTGAGTTTGGGGGGGGGGTTAGGGTTGCCATGAGGGCTTAACTCCAGTGAAAAATAGTGCAACGGCGTGGATATGCAGGGCACTGTACCAGTACACGAGTACAAAAGAAAGAAAAAAAGCCTCGATGGTAAAAATCgg < 1:545297/142‑1 (MQ=255) cGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACACGAGTACAAAAGACAGCAAAAAAGCCCCGATGGTGAAAATCgg > 2:358830/1‑143 (MQ=255) gACGGTGACGTTTGGATGGGGGTTAGTGTTGCCATGAGGGCGTCTCTCAGAGGAAAAATAGGGCGACTGCGTTGTTATGAATTGCACGGTACCAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCggg < 1:457274/143‑1 (MQ=255) gttgcagggtGGGTGGTGGTGAGTGTCGCCGTGAGGGATTCTCCCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCAGAGAACGGTACCAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCt < 1:516144/134‑1 (MQ=255) ggTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCt < 2:474/143‑1 (MQ=255) gTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCTAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAAACgcgccag > 1:704639/1‑137 (MQ=255) gTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTg > 2:246498/1‑143 (MQ=255) ggtTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACa > 2:462628/1‑143 (MQ=255) ggtTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACa < 1:702637/143‑1 (MQ=255) ggtGAGTGTGGCCAGGAGGGCTTCTCGCCAGTGAAAAATAGTGAGACTGCGTTGTTATGCATTGCACTGTACCAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACa < 1:572515/143‑1 (MQ=255) ctAGTGCTGCCACCGGGGCTTCTCTCCAGTGACAAATAGTGCGCCTGCGTTGTTATGCATTGCACTGTACCAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGa < 2:563105/142‑1 (MQ=255) gCCATGAGGGCTTCTCTCCAGGGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACACGATTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTc < 2:720320/143‑1 (MQ=255) cATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGc > 1:528475/1‑143 (MQ=255) tGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCCTTGCACTGGACCAGTACACGAGCACCCAAGACAGAGACACAGCCCCGATGGTAAAAATCGGGGCTGAATATATTAGTGTACCGGGTGTGTTAGcag > 1:332728/1‑141 (MQ=255) ttCTCTCCAGTGAAACATAGTGCGGCCGCGTTGTTATGCATTGCACTGTTCCTTTTCACGTTGACAAAAGCCAGAAAAAAAGCCCCGCTGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCg < 2:439860/143‑1 (MQ=255) tctctcCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATCTTATTTTACCGATTGTGTTCGCTGTACAGCga > 2:420254/1‑143 (MQ=255) cgctcCAGTAAAAAAGAGTGCGACTGCGTTGGTATGCAGTGCACTGTACCAGTACACGAGTCCAAAGGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCgat < 1:143107/141‑1 (MQ=255) ccAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACACAAGTACAAAAGAGAGACAAAAAACCCCGATGGTACAAATCGGGGCTGTATAAATTATTTTACAGATTGTGTTCGCCGGTCAGCGATGCtt > 1:767469/1‑143 (MQ=255) gTGAAAAATAGTGCGTCTGCGTTGTTATGCATTGCACTGTACCAGTACACGAGTACAAAAGCCAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTAAGCGGTGATTACg > 2:177635/1‑143 (MQ=255) tGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGc > 1:169700/1‑143 (MQ=255) tGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTAAGCGATGATTACGc > 2:602818/1‑143 (MQ=255) aaaaaTAGTGCGACTGCGTTGTTATGCATTGCACTGTGCCAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCAt < 1:696667/143‑1 (MQ=255) aaaTAGTTCGACTGTGTTATTATGCATTGCACTTTACTAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATca < 1:602946/143‑1 (MQ=255) agtgggagtgggTTGGTATGGATTGCACTGTCACAATCCGCCACTACAAAAGACAGAAAGAAAGCCCCGATGGTAATAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATcaccac < 1:852363/143‑1 (MQ=255) aGTGCGACTGCGTTGTTATGCAGTGCACTGTACCAGTACACGAGTACAAAAGGCAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCGGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATcaccac < 2:202520/143‑1 (MQ=255) gTGCGCCTGCGTTGTTATGCATTGCACTGTACCAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTTCGCATCaccacc < 1:296477/143‑1 (MQ=255) cGACTGCGTTGTTATGCATTGCACTGTACCAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGATCGTAAAAATCGGGGCAGTAAATATTATTTTACAGAGTGTGTACCCTACTCCCCGATGATTACGCATCACCACCGag > 1:851990/1‑142 (MQ=255) tGCATTGCACTGTACCAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAACGACGACGACCgg > 2:811243/1‑143 (MQ=255) ttGCACCGTACAAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAACGACGACGACCGGTAGa < 2:787615/143‑1 (MQ=255) ttcACTGTACTATTACACGAGTACAAAAGACAGAAAAAGAGGCGGGATGCTAAAAAGCGGGGCTTTATATAGTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAACGACGACGACCGGTAGaa < 2:326165/141‑1 (MQ=255) gCACTGTACCAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAACGACGACGACCGGTAGAat < 2:197972/143‑1 (MQ=255) aCTGTACCAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGAGTGTGATCGCTGGTCAGCGATGATTACGCATCACCACCGAAACGACGCCGACCAGTAGAacca > 1:815497/1‑143 (MQ=255) tgtacacggacaaGAGTACAAAGGCCAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAACGACGACGACCGGTAGAatcatc < 1:446865/134‑1 (MQ=255) tctACCACTACACGAGTACAAAAGACACAACAAAGGTCCCGATGGTAAAAAGCGGGGCTGTATATATTAGTGTACATATTGTGTTCGCTGTTCAGCGATGATTACCCATCACCACCGAAACGACGACGACCGGTAGAatcatc < 1:376315/141‑1 (MQ=255) tGTACCAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAACGACGACGACCGGTAGAatcatc > 2:111560/1‑143 (MQ=255) aCCAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAACGACGACGACCGGTAGAATCATCacg > 2:388208/1‑143 (MQ=255) cccgTACACGAGGACATAGGACAGAAAAAAAGCCTCGATGTTATAAATCGGGGCTGTAGATAGTATTTTACAGATTGTGTTCGCGGTTCAGCGGTGATTACGCATCACCACCGAAACGACGACGACCGGTAGAATCATCacga < 1:526417/140‑1 (MQ=255) cAGGACACGAGGACAAAAGACAGAAGAAAGGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAACGACGACGACCGGTAGAATCATCacgac < 2:250816/143‑1 (MQ=255) gTACACGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAACGACGACGACCGGTAGAATCATCACGAcgc < 2:704639/143‑1 (MQ=255) tgcaggggtgcagaaGACAGAAATAAAGCCCCGATGGTAGAAGTCGGGGCTGTATATACTGTTTTACAGGTTGCCTCCCCTGTTCAGCGATGAGTACGCATCACCACCGAAACGACGACGACCGGTAGAATCATCACGAcgcg < 1:350986/130‑1 (MQ=255) acGAGGACACAAGCCAGAAGAAAAGCCCTTATGGTAAAAATCCGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGGTCAGCGATGATTACGCAGCACCACCGAAACGACGACGACCGGTAGAATCATCACGACGCGGAg < 1:358830/143‑1 (MQ=255) tACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAACGACGACGACCGGTAGAATCATCACGACGCGGAGCGCgg < 2:169700/143‑1 (MQ=255) aaaaGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAACGACGACGACCGGTAGCATCATCACGACGCGGAGCGCGGCCt > 2:420616/1‑143 (MQ=255) aGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAACGACGACGACCGGTAGAATCATCACGACGCGGAGCGCGGCCTTCa < 2:528475/143‑1 (MQ=255) aGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCACTTATTACGCATCACCACCGAAACGACGACGACCGGTAGAATCATCACGACGCGGAGCGCGGCCTTCa < 2:123979/143‑1 (MQ=255) aGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGAGAGCATTACGCGTCGCTTTCCCGATAACAACGACCGGTAGAATCATCACGACGCGGAGCGCGGCCTTCacgac > 1:857709/1‑143 (MQ=255) aacaaaaaGCCCCGTTTGTAAAATCCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAACGACGACGACCGGTAGAATCATCACGACGCGGAGCGCGGCCTTCacgacg < 1:791579/140‑1 (MQ=255) | TCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAACGACGACGACCGGTAGAATCATCACGACGCGGAGCGCGGCCTTCACGACG > NC_000913/3305761‑3306037 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |