New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 153989	1 (0.020)	36 (0.720)	27/282	1.0	97.3%	coding (1438/2598 nt)	htrE	putative outer membrane usher protein
	?	NC_000913	273955 =	NA (NA)					intergenic (+1/+146)	ykfC/insH1	CP4‑6 prophage, conserved protein,Phage or Prophage Related/IS5 transposase and trans‑activator

CCCCATGTTAATGACGGCTTTATCTTTCTGGGGCACAGGCTCATTCGCAAACGCAGTCGTTATGGCGAGATGCGAGTGGTCTCAACGATCCCGCAGGAGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCC  >  NC_000913/273816‑274094                                                                                                                                            |                                                                                                                                            ccccAGGTTAAGGACGGCTTTATCTGTCGGGGGCACAGGCTCATTCGCAAACGCAGTCGTTATGGCGAGATGCGAGTGGTCTCAACGATCCCGCAGGAGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGaa                                                                                                                                          <  2:300730/143‑1 (MQ=255)                gacTTTATCGTTCTGGGGGACAGGCTCATTCGCAAACGCAGTCGTTATGGCGAGATGCGAGTGGTCTCAACGATCCCGCAGGAGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCgg                                                                                                                           <  1:597939/141‑1 (MQ=255)                   tttATCTTTCTGGGGCACAGGCTCATTCGCAAACGCAGTCGTTATGGCGAGATGCGAGTGGTCTCAACGATCCCGCAGGAGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTAGGGAAGGTGCGAATAAGCGGGGa                                                                                                                        >  1:552814/1‑143 (MQ=255)                     ttccctgcgggggCACCGGCTCATTCGCAAACGCAGTCGTTATGGCGAGATGCGAGTGGTCTCAACGATCCTGCAGGAGACAGCCAGAAACTCCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGaaa                                                                                                                      <  1:634464/134‑1 (MQ=255)                       tcttgcggcggCACAGGCTCATTCGCAAGCGCAGTCGTTATGGCGAGATGCCAGTGGTCTCAACGATCCCGCAGGAGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAAtt                                                                                                                    <  2:23971/134‑1 (MQ=255)                         tttcctgctcacaGGCTCACTCGCAAACGCACTCGTTATGTCGAGATGCGAGTGGTCTCAACGATCCCGCAGGAGCAAGCCAGAAGCGTCGCCGCATCGCTGACAACACTGTTATGTTAGGTGCGAACAAGCGGGGAAAttct                                                                                                                  <  1:106675/134‑1 (MQ=255)                          ttCTGGGGCACAGGCTCATTCGCAAACGCAGTCGTTATGGCGAGATGCGAGTGGTCTCAACGATCCCGCAGGAGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAAttctt                                                                                                                 >  1:198199/1‑143 (MQ=255)                          ttCTGGGGCACAGGCTCATTCGCAAACGCAGTCGTTATGGCGAGATGCGAGTGGTCTCAACGATCCCGCAGGAGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAAttctt                                                                                                                 <  1:682509/143‑1 (MQ=255)                             tGGGGCACAGGCTCATTCGCAAACGCAGTCGTTATGGCGAGATGCGAGTGGTCTCAACGATCCCGCAGGAGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGCAATTCTtctc                                                                                                              >  1:606352/1‑143 (MQ=255)                                 gCACAGGCTCATTCGCAAACGCAGTCGTTATGGCGAGATGCGAGTGGTCTCAACGATCCCGCAGGAGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCt                                                                                                          >  2:131620/1‑143 (MQ=255)                                     aGGCTCATTCGCAAACGCAGTCGTTATGGCGAGATGCGAGTGGTCTCAACGATCCCGCAGGAGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCCCTGTTATGGAAGGTGCGGATAAGCGGGGAAATTCTTCTCGGCTGACt                                                                                                      >  2:563595/1‑143 (MQ=255)                                      ggCTCATTCGCAAACGCAGTCGTTATGGCGAGATGCGAGTGGTCTCAACGATCCCGCAGGAGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCGCTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTc                                                                                                     >  2:426311/1‑143 (MQ=255)                                            ttCGCAAACGCAGTCGTTATGGCGAGATGCGAGTGGTCTCAACGATCCCGCAGGAGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAACCGGGCAAAGTCCTCTCgctcgtttccgtcct                                                                                               >  1:801376/1‑129 (MQ=255)                                            ttCGCAAACGCAGTCGTTATGGCGAGATGCGAGTGGTCTCAACGATCCCGCAGGAGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTAGGGAAGGTGCGAGTAAGCGGGGAAGTTCTTCTCGGCTGACTCAGtcag                                                                                               >  2:787231/1‑142 (MQ=255)                                            ggggCAACCGCAGTCGTGATGGCGACATGCGCGTGGTCGCAACGATGCCGCAGGAGAAAGCAAGAAACGTCGCCGCATAGCTGATAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcat                                                                                               <  2:133321/140‑1 (MQ=25)                                              cGCAGACGCAGTCGTTATGGCGAGATGCGAGTGGTCTCAACGATCCCGCAGGAGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcattt                                                                                             <  2:8470/143‑1 (MQ=255)                                                      atgtttttATGGTGTGTTGCGAGGGGAATCAACGATCCCGGAGGAGAAAGCCAGAAACCTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATttctt                                                                                     <  2:699449/137‑1 (MQ=21)                                                       ggTCGTTATGGGGAGATGGGAGTGGTCTCAACGATCCCGGAGGAGAAAGCCAGAAGGTTGGCAGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAAGTCTTCTCGGCTGGCTCAGTAATTTCATttcttc                                                                                    <  1:775473/142‑1 (MQ=25)                                                           gTTATGGCGCGATGCGAGTGGTCTCAACGATCCCGCAGGAGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGt                                                                                <  1:268463/143‑1 (MQ=255)                                                               ggccgaccgccGAGCGGCCTCCACCATCCCGCAGGAGAAAGCCATAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCACGTTTGa                                                                            <  1:432583/133‑1 (MQ=21)                                                                  cGAGATGCGAGTGGTCTCAACGCTCCCGCAGGAGAGAGCTAGAAACTTCGCCGCAGCGCTGACAGCACTGTTCTGGAAGGTGCGAATAAGCGGGGACACACCTGTAGGCGCGCTCAGTCCCTTCATTTGTTCATGTTTGGGcc                                                                         >  1:386176/1‑143 (MQ=255)                                                                       tGCGAGTGGTCTCAACGATCCCGCAGGAGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAttt                                                                    >  1:742227/1‑143 (MQ=255)                                                                         cGAGTGGTCTCAACGATCCCGCAGGAGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTCCATTTCTTCATGTTTGCGCCGAttttt                                                                  >  1:78229/1‑143 (MQ=255)                                                                           aGTGGTCTCAACGATCCCGCAGGAGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTtc                                                                <  2:198199/143‑1 (MQ=255)                                                                               gcctcAACGTTCCCGCAGGAGCAAGCCAGCATCTTCGCCGCCTCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATTTTTGAGCCGATTTTTTCTccc                                                            <  1:560867/141‑1 (MQ=18)                                                                                tctcAACGATCCCGCAGGAGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCg                                                           >  1:321229/1‑143 (MQ=255)                                                                                  tcAACGATCCCGCAGGAGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTa                                                         >  2:128359/1‑143 (MQ=255)                                                                                    agcGATCACGCACGAGAACGTCAGCAACTTCGCCGCATCGCTGATATCACTGGTATGGAAGTTGCGAATACGCGGGGAAATTCTTCTCGGCTTACTCAGTCATTTCATTTCTTCATGTTTGAGCCAATTTTGTCTCCCGTaaa                                                       <  1:271465/141‑1 (MQ=17)                                                                                     aCGATCCCGCAGGAGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATCTTTGAGCCGCTTTTTTCTCCCGTacac                                                      >  1:821466/1‑140 (MQ=255)                                                                                            cGCAGGAGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATGAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGa                                               >  2:790370/1‑143 (MQ=255)                                                                                              caggggaggtccAGAAGCTTCGCTGCGTCTCGTACCGTACTGTTTTATAGTGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAAt                                             <  1:758552/133‑1 (MQ=11)                                                                                                  agaAAGCCGGAAACTTCGCCGCGTCGCTGACATCGCTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGc                                         <  1:316659/143‑1 (MQ=255)                                                                                                  agaAAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAACAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGc                                         >  1:277662/1‑143 (MQ=255)                                                                                                          aGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTTAGCCGCTTTTTTCTCCCGTAAATTCCTTGAATCAGCCTATTTAg                                 >  1:332913/1‑143 (MQ=255)                                                                                                          aGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTCGATCAGCCTATTCAg                                 >  1:501817/1‑143 (MQ=255)                                                                                                                 tcgcggtctCGCTGACTGCATTGTTATGGATGGTGCGAATACGCGGGGAAATTTTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTTAATCAGCTTATTTAGACCGttt                          <  1:698057/135‑1 (MQ=11)                                                                                                                 tCGCCGCTGCGCTGACCGTGCTGTTATGGACGGTGCGAATAAGCGGGGAAAGTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGttt                          <  1:692875/143‑1 (MQ=11)                                                                                                                 tCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGttt                          >  1:798590/1‑143 (MQ=255)                                                                                                                      gcATCGCTGACAGCACTGTGATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCg                     <  2:620627/143‑1 (MQ=255)                                                                                                                          cGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATGTTTTCTCCCGTCAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCAt                 >  1:748430/1‑143 (MQ=255)                                                                                                                                       gTTATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATc    <  2:742227/143‑1 (MQ=32)                                                                                                                                        ttATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATcc   <  1:461960/143‑1 (MQ=32)                                                                                                                                         tATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATccc  <  2:798590/143‑1 (MQ=32)                                                                                                                                            |                                                                                                                                            CCCCATGTTAATGACGGCTTTATCTTTCTGGGGCACAGGCTCATTCGCAAACGCAGTCGTTATGGCGAGATGCGAGTGGTCTCAACGATCCCGCAGGAGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTATGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCC  >  NC_000913/273816‑274094

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.