New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 732888 =38 (0.760)4 (0.080) 4/274 7.0 9.8% coding (3306/4194 nt) rhsC Rhs protein with putative toxin domain, putative neighboring cell growth inhibitor
?NC_000913 3622465 = NA (NA)coding (3275/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain, putative neighboring cell growth inhibitor
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGGGTCGAAACTGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGA‑‑AAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCT  >  NC_000913/3622324‑3622561
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aGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGGGTCGAAACTGCCACCGGTGAGCTGGCGCAAACGCAGCGCCGCAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGCGGCAGTGGGGTGTTCccg                                                                                                   >  1:533342/1‑143 (MQ=255)
aGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGGGTCGAAACTGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCCCTTCCGGGAGGCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCccg                                                                                                   >  2:365677/1‑143 (MQ=14)
aGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGGGTCGAAACTGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGCAGCCGCTGGCAGTGTGGTGATCacg                                                                                                   >  2:573811/1‑143 (MQ=11)
   cGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGGGTCGAAACTGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCccgccg                                                                                                <  2:605792/143‑1 (MQ=38)
   cGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGGGTCGAAACTGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCccgccg                                                                                                <  1:387354/143‑1 (MQ=38)
     aTTTATCAGCCGGGGAGCGTCACGCGAAGATTCATTGTCGACACTGGCACCGGTGAGCTGGCGCAAACGCAGCGCCGCAGCCTGGCGGATGCCCTTCACCAGTCCGGCGGCGAAGCCGGTGGCAGAGTGGGGGTCccgccgcg                                                                                              >  1:628990/1‑141 (MQ=11)
        gcgcAGCGGGGGGGCTTCACGCCACTCATCGGGGTCGAAACTGCCCCCGGTGAGCTTGCGAAAACGCGGCGCCGCAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCt                                                                                           <  1:9691/140‑1 (MQ=11)
            aGCCGGGGAGCTTCACGCCACTCATCAGGGTCGAAACTGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCCGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGGGCAGACGGGGGCAGTGCGGAGCGCCCGCCGGTGCTgcgg                                                                                       >  1:228947/1‑140 (MQ=11)
              ccGGGCAGCGTCACGCCACTCGTCAGGGTCGAAACTGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCa                                                                                     <  2:291880/143‑1 (MQ=255)
               cGGGGAGCTTCACGCCACTCATCAGGGTCGAAACTGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGGGTGGTGTTCCCGCCGGTGCTGGTGCAg                                                                                    >  1:320407/1‑143 (MQ=38)
                   gAGCTGCACGCCACTCATCAGGGTCGAAACTGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGc                                                                                <  1:694763/143‑1 (MQ=38)
                      cTTCACGCCACTCATCAGGGTCGAAACTGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCCCTTCAGCAGCCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGAGCTGGTGCAGATGCTCg                                                                             >  2:274509/1‑143 (MQ=255)
                       ttCACGCCACTCATCAGGGTCGAAACTGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGa                                                                            <  2:708001/143‑1 (MQ=38)
                       ttCACGCCACTCATCAGGGTCGAAACTGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCCCTTCAGAAGTCCGGCGGCGAAGACGGTGGGCGTGTGGTGTTCGCGCCGGTGCTGGTGCAGATGCTCGa                                                                            >  1:682507/1‑143 (MQ=255)
                       ttCACGCCACTCATCAGGGTCCAAACTGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGCGTTCCCGCCGGTGCTGGTGCCGATGCTCgc                                                                            >  1:109428/1‑142 (MQ=255)
                        tCACGCCACTCATCAGGGTCGAAACTGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGAc                                                                           <  2:28033/143‑1 (MQ=38)
                        tCACGCCACTCATCAGGGTCGAAACTGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGAc                                                                           >  2:261088/1‑143 (MQ=39)
                             ccACTCATCAGGGTCGAAACTGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGCTGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGCGGGGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCt                                                                      >  2:140786/1‑143 (MQ=255)
                                 tcatcaGGGTCGAAACTGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCCCGTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTggga                                                                  >  1:426135/1‑141 (MQ=255)
                                  catctGGGTGGAAACTGTCATCGGTGAGCTGGCGAAAACGCAGCGCTGCAGACTGGCGGATGCCCTGCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGa‑‑aa                                                               <  2:446726/143‑1 (MQ=11)
                                   atcaGGGTCGAAACTGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGGGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGA‑‑AAg                                                              >  2:773190/1‑143 (MQ=38)
                                    tcaGGGTCGAAACTGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGA‑‑AAGt                                                             >  2:267722/1‑143 (MQ=38)
                                    tcaGGGTCGAAACTGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGA‑‑AAGt                                                             >  2:67704/1‑143 (MQ=39)
                                      aGGGTCGAAACGGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGA‑‑AAGTGa                                                           <  2:592808/143‑1 (MQ=25)
                                        ggTCGAAACTGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGA‑‑AAGTGaaa                                                         <  2:307823/143‑1 (MQ=37)
                                             aaaCTGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGA‑‑AAGTGAAATCCTg                                                    <  1:230839/143‑1 (MQ=34)
                                                 tGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGA‑‑CGGTGAAACCCTGGCTg                                                >  1:872592/1‑143 (MQ=16)
                                                      ccGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGA‑‑AAGTGAAATCCTGGCTGACCgg                                           <  2:350593/143‑1 (MQ=32)
                                                            aGCTGGCGAAAAGGCAGCGCCGCAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCTGATGCTCGTCCG‑‑TGGATTAATTGAAATCCTGGCTGACCGGgtgagt                                     <  1:722199/143‑1 (MQ=11)
                                                              gtGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGA‑‑AAGTGAAATCCTGGCTGACCGGgtgagtga                                   <  2:45352/142‑1 (MQ=17)
                                                              cgggCGAAAACGCAGCGCCGCAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGA‑‑AAGTGAAATCCTGGCTGACCGGgtgagtga                                   <  2:541868/141‑1 (MQ=17)
                                                              cTGGCGAAGACGCAGCGCCGCAGCCTGGCGGATGCCCTTGAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTGCGCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGA‑‑AAGTGAAATCCTGGCTGACCGGgtgagtga                                   <  1:639658/143‑1 (MQ=255)
                                                                   gAAAACGCAGCGCCGCAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGA‑‑AAGTGAAATCCTGGCTGACCGGGTGAGTGAGGaaa                              >  2:269652/1‑143 (MQ=32)
                                                                     aaaCGCCGCGCCGCAGCCCGGCGGACGCCCGTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGA‑‑AAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAgc                            <  2:430090/143‑1 (MQ=255)
                                                                              gccgcAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCACGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGA‑‑AAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCgctgg                   >  1:829366/1‑143 (MQ=17)
                                                                                  cAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGA‑‑AAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGctggctgg               <  1:269652/143‑1 (MQ=32)
                                                                                       tGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCGGGTGACGCCGCAGAGTCTCGACCGGCTGGA‑‑AAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGGTGGCATCg          >  2:789675/1‑143 (MQ=11)
                                                                                       tGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGACGGTGCTGGTGCAGCTGCTCGACCGGCTGGA‑‑AAGTGAAATCCTGGCTGACCGGGCGAGTGCGGAAAGCCGCCGCTGGCTGGCATCg          >  2:169595/1‑143 (MQ=255)
                                                                                          cGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGA‑‑AAGTGAAATCCTGGCTGACGGGGCGGGTGAGGAAAGCCGCCGCAGGCGGGCAACGtac       >  1:265360/1‑141 (MQ=11)
                                                                                             aTGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGA‑‑AAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGc    >  2:648280/1‑143 (MQ=32)
                                                                                               gCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGA‑‑AAGTGAAATCCTGGCTGACCGGGTGAGTGAGGACAGCCGCCGCCGGCTGGCAGCGTGCGGcgg  >  1:777276/1‑141 (MQ=2)
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AGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGGGTCGAAACTGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGA‑‑AAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCT  >  NC_000913/3622324‑3622561

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.