| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 12 (0.240) | 34 (0.770) | 29/250 | 0.5 | 75.9% | coding (290/630 nt) | stfP | e14 prophage, uncharacterized protein |
| ? | NC_000913 | 1209619 = | 11 (0.250) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related | |||||
CGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTG > NC_000913/1209479‑1209757 | agatgcttttgcggcattccacccccactgaatgataactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccgaCGt > 2:568596‑M2/141‑143 (MQ=255) gatgcttttgcggcattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGtt < 2:653840‑M2/4‑1 (MQ=255) tgcggccttccacccccactgactgattactgattgctcaataccaccaatcatatccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccatCGTTTATGaaaa < 1:163887‑M2/12‑1 (MQ=255) gcattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgtttctgcattgagctttgctccttctcccaaaccaaCGTTTATGAAAATgaa > 1:50846‑M2/128‑143 (MQ=255) cattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaacccaaCGTTTCTGAAAATgaag > 1:496640‑M2/127‑143 (MQ=255) cattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgctgctgcattgagtcatgctccttctcccaaacaaaCAATCATCAAAATgaag > 1:415605‑M2/127‑143 (MQ=255) gcccccactgactgatttctgattgctcactaccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATaa < 1:71441‑M2/23‑1 (MQ=255) acccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGATTATGAAACTGAAGAAATaa > 2:64450‑M2/121‑143 (MQ=255) acccccactgaatgattactgattgctcaataccaccaatcataaccagtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAACTGAGGAACTaa > 1:755653‑M2/121‑143 (MQ=255) cactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATACCCAGc > 1:316370‑M2/116‑143 (MQ=255) cagcagAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTGTATGAAAATGAAGAAATAAGAAGCAAATGGc > 1:755008/1‑143 (MQ=255) cattactcattgctcaatcccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGca < 1:657235‑M2/36‑1 (MQ=255) gcagAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGCGACACCAACAGGTAACGCAGAGCCTTCTCCCAAACCCACGTCCATGAAAACGACGAAATAgcaagcaacaggccg > 1:12300/1‑136 (MQ=255) gattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcatcgagttttgctccttctcccccacccaCGTTTCTGCAAATCACGACATAACAAGCACATGGCACAATTcc > 2:256230‑M2/101‑143 (MQ=255) aaGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTCTATGAAAATCAAGAAATAACAAGCAAACGGCATCATTCCt > 2:717962/1‑143 (MQ=255) gCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTGATGCAGAGCCTTCACCCAACCCCACGCTTATGAAAAGGAAGAAATACAAACCAAATGGCATCCGTCCTGc > 1:219992/1‑143 (MQ=255) gCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCCAAGTAGACGACAATGAAGAAATAACAAGCAAATGGCATCATTCCTGc > 1:522559/1‑143 (MQ=255) gCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTGTCAGAAAATGAAGAAATAACAAACAAATGGcatcaataatgc > 2:565207/1‑136 (MQ=255) ctcaatcacaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCtt < 2:61021‑M2/48‑1 (MQ=255) ctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcatagagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCtt > 2:389515‑M2/96‑143 (MQ=255) ataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTAc < 2:664959‑M2/52‑1 (MQ=255) caccaatcataaccggtatagctaggaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttcgcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAgg < 2:800705‑M2/56‑1 (MQ=255) accaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAggg < 1:720067‑M2/57‑1 (MQ=255) ataaccgttatagctatgacagcggtgcgtcctaatggagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTa < 1:161360‑M2/64‑1 (MQ=255) accggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccgatcaatCGTCTATCAAAAGGAGTGAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACa > 2:641450‑M2/77‑143 (MQ=255) accggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACa < 2:734747‑M2/67‑1 (MQ=255) atcggtatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTa < 1:372261‑M2/73‑1 (MQ=255) agctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTAtt < 2:651368‑M2/75‑1 (MQ=255) gctatgaaaccggtgcttcttaatgtagtcgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTg < 1:479037‑M2/76‑1 (MQ=255) aGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACGAACGTGTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGACTTAACATGCTGATTGGCTAt > 1:777536/1‑143 (MQ=255) aGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTAt < 2:430024/143‑1 (MQ=255) aaccggtgcgtcctaatggagccgttgctgcagtgagttttgatcctcatggcaaaccaaCGTTTATGAAAGTGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGt < 2:686793‑M2/83‑1 (MQ=255) cagggCCACGGAACCCAGAAACCAACAGGTAATGCAGAGCCTTCTTCCAAACCAACGTATATGAAAATGAAGAAATAACAATCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTAcgcg < 1:681966/140‑1 (MQ=255) cgcgtcctcatgtaaccgttgctgcattgagtttttttcattctcccaaaccaaCGTTTATTAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGt < 1:258812‑M2/89‑1 (MQ=255) ctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTatcatc > 2:358631‑M2/49‑141 (MQ=255) ctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGGTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGATTATACCAGGGGGATATAACAAGCTTATTGGCTCTGTACGCGTATcaac > 1:854669‑M2/49‑143 (MQ=255) actggagccgttgctgcactgagttttcgtacgtcttccagaccaaCGGTTATGAAAATGAAGAAATAACAATCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATcaacaa < 1:853761‑M2/97‑1 (MQ=255) atgtagccgttgctgcattgagttttgcgccttcccccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACaaa < 2:783393‑M2/98‑1 (MQ=255) atggagccgtggctgcgtggagtgttggtccgtgccacaaaccaaCGTTGATGAAAATGAAGAAATAACAAGCAAATGGCATCATTTCTGCTATTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACaaa < 2:860958‑M2/98‑1 (MQ=255) tcgccgttgctgcattgagttttgctccttctcccaaaccagCGTTTATGAAAATGAAGAAATAGCAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACACATGa < 1:195348‑M2/101‑1 (MQ=255) tagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGa < 2:589853‑M2/101‑1 (MQ=255) cgttcatgcattgagttttgctccttctccgaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAg < 1:872448‑M2/105‑1 (MQ=255) aaCAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTAAGCGTATCAACAAATGACCAGAAcaca > 2:241563/1‑143 (MQ=255) attgagttttgctccttctcccaaaccaaCGTTTATCAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGCGGGATTTAACATACATATTCGCTATGTACACGTATTACGAGATGaccacaaccacgat > 1:557754‑M2/30‑137 (MQ=255) gagCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTATGACAAGGGGGATTTAACAGGCTTATTGGCTGTGTACGCGGAGCAACAACAGACCAGAACACGAGTCTCCAACGtc > 1:64612/1‑142 (MQ=255) tcccacaccaaCGTTTATGAAAATGAAGAAATAACAAGTAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTg < 1:304025‑M2/132‑1 (MQ=255) ccctaaccaaCGTTTACGAACATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATGCGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGa < 2:755653‑M2/133‑1 (MQ=255) ccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGCACACAGATCTACAACGTAATGCGCGGaa > 2:273516‑M2/10‑143 (MQ=255) ccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGCTCTACAACGTAATGCGCTGaa > 1:687707‑M2/10‑143 (MQ=255) ccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTAGCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACtgtg > 1:677496‑M2/5‑143 (MQ=255) | CGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTG > NC_000913/1209479‑1209757 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |